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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005523 ID=TCONS_00005523|Name=TCONS_00005523|organism=Clytia hemisphaerica|type=transcript|length=1418bp
gaaaaaagggaTAAAAAGTTTTGGAGAATATTAGAGCAGTTGGGTGAATC
ATTGGTTCTTAACTATAAAGATAACTATTGGCTATTAATTTCTTATGAAA
TCTAGATTTTATTAGGTTGATCATTTCAATTGCATTGTCTTATTTATGTC
AATAATTTCTCAAATATACTTATTTGAAGACACTGCCATATGAAAATCAG
AAAGTCAGGAAAATACTTCCTCGTTGCAAAGTGAAGACAATTTTGGCaaa
gctttttttttcaaaatttgaacatAGAGGCTGGTCATTGTAACTTTGAA
ACAAGATATAAATCtcatattgaatttcaaaatatcgaTGTAAAATAACA
TAATAGTGTAATAGCATAATAACAACGAAATTAATCAGAAACACCATGTG
GAAAgcaatgaaaaagatttttgagcgTACTCCAACACCAGGATACATAT
TGGGGACCTTTATGGTTGCTAGTATCACTTTATTTGGTGGTACAAAATAC
ATCTTTATGATGTCCTCATGGAACGCTTATAAGATTCGAAGAACGATCGA
AGGGGATTTCCCTGTCAACACTTCACATCATTACGAAACCgttaaatttg
gtgaaaataagaaacatacAGAATATGAGTTAATGATTGATGACGTTATT
AAGACCATTACCATAATTGTTGAGTTAAATATGGTGACAACAGCTCTGTC
AATTTTAACAACACTTGGTTTGTTTTGCGTCATGTCAAAATCGATGACAG
TCAATAAAGAAAGACGAAACGCAGTCCTACCGTATCTCATTTGGAATTGC
ATAGCTATTCTTTACAATATCGTAGCTTTGGTTTTTATCTCAATATACCT
CAAAGATTGGATCTCAAAGCTAGTTGAAATTACAATTGGTATGAGTGTTA
CAATAGGTGCTGATTTCTTATTTATTATCTTGGTGACATTTTACCATCGA
TACCTGACCAGGCTTCGCTTATCATCTTCCCCAGCACTGCTTCTAAGATA
CAAAAATGGAGAGATATCAGCTCGGCTCCAAACAGCCGACGTCGATGAAG
TTGCCATACCAGAAGGCATGTTAGAAGAAATTTTCCAACACGAACAACCG
AGGCGATTGTCAATACAAAAGTTGAGAGTAGCGTCAAGGAAAGATAGCAC
TTTTTAGCATTTCCTGGACTAGAACTAGAGGTGATAACAGGTTTTGATGA
CTTTATAGCCAAAAACCAAATTCAANTTTTTAGCATTCCCTGGACTAGAA
CTAGAGGTGATAACAGGTTTTGATGATTTTATAAGCAAAAACCAAATTCA
AAACTAATTCTTTTTTGTATATAAATAACcataaatattttgaatgtaAT
ATATTACAATTAAAAGCTAATACTTTAATCCATATACACTAACATTAGAT
AAAGGcacaaaattaaat Run BLAST on NCBI protein sequence of TCONS_00005523-protein >TCONS_00005523-protein ID=TCONS_00005523-protein|Name=TCONS_00005523-protein|organism=Clytia hemisphaerica|type=polypeptide|length=253bp
MWKAMKKIFERTPTPGYILGTFMVASITLFGGTKYIFMMSSWNAYKIRRT
IEGDFPVNTSHHYETVKFGENKKHTEYELMIDDVIKTITIIVELNMVTTA
LSILTTLGLFCVMSKSMTVNKERRNAVLPYLIWNCIAILYNIVALVFISI
YLKDWISKLVEITIGMSVTIGADFLFIILVTFYHRYLTRLRLSSSPALLL
RYKNGEISARLQTADVDEVAIPEGMLEEIFQHEQPRRLSIQKLRVASRKD
STF Run BLAST on NCBI transcript from alignment at sc0000053:426504..427921 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005523 ID=TCONS_00005523|Name=TCONS_00005523|organism=Clytia hemisphaerica|type=transcript|length=1418bp|location=Sequence derived from alignment at sc0000053:426504..427921 (Clytia hemisphaerica)
atttaattttgtgCCTTTATCTAATGTTAGTGTATATGGATTAAAGTATT
AGCTTTTAATTGTAATATATtacattcaaaatatttatgGTTATTTATAT
ACAAAAAAGAATTAGTTTTGAATTTGGTTTTTGCTTATAAAATCATCAAA
ACCTGTTATCACCTCTAGTTCTAGTCCAGGGAATGCTAAAAANTTGAATT
TGGTTTTTGGCTATAAAGTCATCAAAACCTGTTATCACCTCTAGTTCTAG
TCCAGGAAATGCTAAAAAGTGCTATCTTTCCTTGACGCTACTCTCAACTT
TTGTATTGACAATCGCCTCGGTTGTTCGTGTTGGAAAATTTCTTCTAACA
TGCCTTCTGGTATGGCAACTTCATCGACGTCGGCTGTTTGGAGCCGAGCT
GATATCTCTCCATTTTTGTATCTTAGAAGCAGTGCTGGGGAAGATGATAA
GCGAAGCCTGGTCAGGTATCGATGGTAAAATGTCACCAAGATAATAAATA
AGAAATCAGCACCTATTGTAACACTCATACCAATTGTAATTTCAACTAGC
TTTGAGATCCAATCTTTGAGGTATATTGAGATAAAAACCAAAGCTACGAT
ATTGTAAAGAATAGCTATGCAATTCCAAATGAGATACGGTAGGACTGCGT
TTCGTCTTTCTTTATTGACTGTCATCGATTTTGACATGACGCAAAACAAA
CCAAGTGTTGTTAAAATTGACAGAGCTGTTGTCACCATATTTAACTCAAC
AATTATGGTAATGGTCTTAATAACGTCATCAATCATTAACTCATATTCTg
tatgtttcttattttcaccaaatttaacGGTTTCGTAATGATGTGAAGTG
TTGACAGGGAAATCCCCTTCGATCGTTCTTCGAATCTTATAAGCGTTCCA
TGAGGACATCATAAAGATGTATTTTGTACCACCAAATAAAGTGATACTAG
CAACCATAAAGGTCCCCAATATGTATCCTGGTGTTGGAGTAcgctcaaaa
atctttttcattgcTTTCCACATGGTGTTTCTGATTAATTTCGTTGTTAT
TATGCTATTACACTATTATGTTATTTTACAtcgatattttgaaattcaat
atgaGATTTATATCTTGTTTCAAAGTTACAATGACCAGCCTCTatgttca
aattttgaaaaaaaaagctttGCCAAAATTGTCTTCACTTTGCAACGAGG
AAGTATTTTCCTGACTTTCTGATTTTCATATGGCAGTGTCTTCAAATAAG
TATATTTGAGAAATTATTGACATAAATAAGACAATGCAATTGAAATGATC
AACCTAATAAAATCTAGATTTCATAAGAAATTAATAGCCAATAGTTATCT
TTATAGTTAAGAACCAATGATTCACCCAACTGCTCTAATATTCTCCAAAA
CTTTTTAtcccttttttc Coding sequence (CDS) from alignment at sc0000053:426504..427921 >TCONS_00005523 ID=TCONS_00005523|Name=TCONS_00005523|organism=Clytia hemisphaerica|type=CDS|length=762bp|location=Sequence derived from alignment at sc0000053:426504..427921 (Clytia hemisphaerica)
CTAAAAAGTGCTATCTTTCCTTGACGCTACTCTCAACTTTTGTATTGACA
ATCGCCTCGGTTGTTCGTGTTGGAAAATTTCTTCTAACATGCCTTCTGGT
ATGGCAACTTCATCGACGTCGGCTGTTTGGAGCCGAGCTGATATCTCTCC
ATTTTTGTATCTTAGAAGCAGTGCTGGGGAAGATGATAAGCGAAGCCTGG
TCAGGTATCGATGGTAAAATGTCACCAAGATAATAAATAAGAAATCAGCA
CCTATTGTAACACTCATACCAATTGTAATTTCAACTAGCTTTGAGATCCA
ATCTTTGAGGTATATTGAGATAAAAACCAAAGCTACGATATTGTAAAGAA
TAGCTATGCAATTCCAAATGAGATACGGTAGGACTGCGTTTCGTCTTTCT
TTATTGACTGTCATCGATTTTGACATGACGCAAAACAAACCAAGTGTTGT
TAAAATTGACAGAGCTGTTGTCACCATATTTAACTCAACAATTATGGTAA
TGGTCTTAATAACGTCATCAATCATTAACTCATATTCTgtatgtttctta
ttttcaccaaatttaacGGTTTCGTAATGATGTGAAGTGTTGACAGGGAA
ATCCCCTTCGATCGTTCTTCGAATCTTATAAGCGTTCCATGAGGACATCA
TAAAGATGTATTTTGTACCACCAAATAAAGTGATACTAGCAACCATAAAG
GTCCCCAATATGTATCCTGGTGTTGGAGTAcgctcaaaaatctttttcat
tgcTTTCCACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005523-exon-sc0000053-1491911889:426504..427921 | TCONS_00005523-exon-sc0000053-1491911889:426504..427921 | Clytia hemisphaerica | exon |
| TCONS_00005523-exon-sc0000053-1510915933:426504..427921 | TCONS_00005523-exon-sc0000053-1510915933:426504..427921 | Clytia hemisphaerica | exon |
| TCONS_00005523-exon-sc0000053-1575043694:426504..427921 | TCONS_00005523-exon-sc0000053-1575043694:426504..427921 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000053 | supercontig | sc0000053:426504..427921 . |
Blast
The following BLAST results are available for this feature:
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