TCONS_00005522 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005522
Unique NameTCONS_00005522
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length485

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005522 ID=TCONS_00005522|Name=TCONS_00005522|organism=Clytia hemisphaerica|type=transcript|length=485bp
GTTAGGGAGATCGGAAATAGCTTTTCTGTCTTGTTTCTAGTGATGACTTT
ACTCGAAAAAATAGTGTTTTCAATTTATTGGCAGATAATTCAATCTTTAG
TTTTCTGAACCCTTGAAATTGGGAATAAACCACTTCAATATTTTACAGAT
ATCTATGTAGAATAAATAAATACCGAAGATAATATCCGACAGAATTATAT
TCCCAAAAAAGACTTTGCTGCTTCACTAAGTTCAATATAAGGATTTATGA
AGGAAATCAATATTGCCTGAAAAAAGACTGCTTATGAATGTTTCAGTCAA
TCACAACCGAATGAGGCAGTAAAAATTATACACCAACCTTGACAGATCCT
CTTGTATGCCAGGAAGCAAAGATCTTCCCAAAAGTGAATAAAGGCCGGTC
TCAACTTGCGCGCACTGCGATTGCACCTTtaggcttcaatcctttttgct
tggaaaaaggattacgtcataaaaatgtagcgcgc
Run BLAST on NCBI

transcript from alignment at sc0000053:425891..426375

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005522 ID=TCONS_00005522|Name=TCONS_00005522|organism=Clytia hemisphaerica|type=transcript|length=485bp|location=Sequence derived from alignment at sc0000053:425891..426375 (Clytia hemisphaerica)
gcgcgctacatttttatgacgtaatcctttttccaagcaaaaaggattga
agcctaAAGGTGCAATCGCAGTGCGCGCAAGTTGAGACCGGCCTTTATTC
ACTTTTGGGAAGATCTTTGCTTCCTGGCATACAAGAGGATCTGTCAAGGT
TGGTGTATAATTTTTACTGCCTCATTCGGTTGTGATTGACTGAAACATTC
ATAAGCAGTCTTTTTTCAGGCAATATTGATTTCCTTCATAAATCCTTATA
TTGAACTTAGTGAAGCAGCAAAGTCTTTTTTGGGAATATAATTCTGTCGG
ATATTATCTTCGGTATTTATTTATTCTACATAGATATCTGTAAAATATTG
AAGTGGTTTATTCCCAATTTCAAGGGTTCAGAAAACTAAAGATTGAATTA
TCTGCCAATAAATTGAAAACACTATTTTTTCGAGTAAAGTCATCACTAGA
AACAAGACAGAAAAGCTATTTCCGATCTCCCTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003140XLOC_003140Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005522-exon-sc0000053-1491911889:425891..426375TCONS_00005522-exon-sc0000053-1491911889:425891..426375Clytia hemisphaericaexon
TCONS_00005522-exon-sc0000053-1510915933:425891..426375TCONS_00005522-exon-sc0000053-1510915933:425891..426375Clytia hemisphaericaexon
TCONS_00005522-exon-sc0000053-1575043694:425891..426375TCONS_00005522-exon-sc0000053-1575043694:425891..426375Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000053supercontigsc0000053:425891..426375 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.385628	0.376048	0.145542	0.569562	0	0.410943	0.495785	0	0.216641	0.134172	0	0	0.512938	1.33173	0.364954	0.391651	0.385986	0.296717	1.77637	2.57378	1.3671	0.727446	0	0.133994	0.13801	0.123171	0.176257	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005522 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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