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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005520 ID=TCONS_00005520|Name=TCONS_00005520|organism=Clytia hemisphaerica|type=transcript|length=2736bp
CACGTCTTTTATAAGAgagatatcaatttttttgatcaAAACGAAGCTAT
ATATGAAACAATATATTGAGCTGACACATGCTAGATCGTCTAACACTAGA
GACGGCAAGCAGATAAAATTAGATTTACTGGGTTTCTTAGACAAGTGATT
ACCTTTTGAAAAGGGgaatttaaaatttataaatGGATGAATTTTAGTTT
ACAAACACAATCTTATCAAGCCTATaaaaaaacttatcagagggaaCTAT
ATGGAGATTTGTTTCGTATTGGCAACAAGTTATTTCAACCATCAGTGGGT
GGAATCAATAGATCTGCAGTTTTGTCCTAAAGATATAGCCCTGATCGCTA
AATACTGATACTGTAGATTAAAATAAATTTGTGTTGTGACGGAGACTACA
ACGATATCGAGAGAACTTTTATGAAGATGAGCTCAATATTCTGAAGTTGT
TTTTCAAAACATAATAAACCGTCAAAGGTCAAGGTTTTCTTGGTTTAGTA
ATTCACAAATCTGATAGTAATATCAATAACACTACAAAGCAAACGATACC
ATAATGGGAGATTTATATGGAACCATTCTGGATGTTTGTTTGTGTAAACT
GGAAGACCAAATCGAATTTTTACAAGTTAACCAAGAATTCGAATATCAGG
ATGCAATCTACCGAACCGGTGACGTGTTAGATATACGAAGTCGACGTAAT
GGAGCCAGATGCAACGGTCTTTGGGTCCGTAATTTATCAGATAAACAAGA
TCACGAGGAACGTTATTTGCCAAGCTTTATTAAAGGGAATTTCACTTCAG
TACAAATGCCTTTAAACGCATATAGCGATCGGTATGTcgatcaaaaaact
ttcaataaccAAAACCAATCTATCGAGCTAGATGAAGAAAACAATAGCAG
ATTTATACTTAATTACCGACCAGGTCAGAAGTCTGAGACAAGCGATGAAT
CAAATTCTATAAAAGAGGGTAGCAACAGTACTAATCAACTGAACAATAGA
GCTTTACCTCCGAAACCAGGTCAAAGGACTGTTCCGCCTCCTCCAAAACC
TGATCAGAAACCACCGGTCTACCAACCTTCTTCACCCAATCAACAGCCGG
TTCAACCATCCCCTAGATCAGGAAAAAAGCCAAACGGACACGGATACACA
AGCCAGAGACCTGTTCCCGTACCACCTAGAGAGAGCCAGCTACAACCAGA
CCAGAAACCAGCTGTCTTTCAGGCTCATCCACCCAATCAACAACCGGTTC
AAACATCACCTGAATCAAATAAACATCCTAAAAGACAGAGACCTGTTCCC
TTACCACCAAGAGAAAACCACCTACTACTTAGCAACGGAGAGGAAGACAC
CACTAGAAGGCAATTTTCATATGATGGGTTACCAGAAAGAAACGAGAGAT
GTCATGACTACGAATTAATGAAAAGACAAAGTTCGTACGAAAAACGCACT
TTCGAAGTACAACAGTCAGCATACCAAAGACAATCATTAGTAGATTTTAA
TACAAATCAGAAATTTGGCGCCACGTCAAATGATATTTACGCCTTAAACG
AAAGGGCGTTTACGGAACAACGCGCCCTAAATCGACGCCCTGTACCTGTA
CCGAGTGCTATGCTAACGACGAATGGAATCAACTTTGATACTAATTTCAA
TCGAATCCCTTCAATGAGGATTGAAGATAAATTTACTTCAAATACGCCCT
TGTTTACGCCCAAAAAGAAACTAAATGAAAACCCACACAAAGACTCAGGA
ATCAAAGACATAGAACAAAAAGTTGCTAAAGCTAAAATCTCAGAATCAAC
TAAAAGTGATATTGTAAAGTTCTTGAAAACTATAGGTTGTTACGATGAGa
taatgaaaaagaattttcgataTTTGGAAAAGACTTGTATGGAGAATCAA
TTACTGGAAGACTTTAAATCGAACGAAGTTTGCGGGCGTGTCATTTACCA
ATACCTATACAAAGGATGGCGCCCTAATTTAAAACCGCCCCAAAATTGGA
AACAGAAGGAACCGCCCACATTCAGTGTATCTGAACTATATTTATATCTG
ATGTCAAAAAATTCTTACCGCTTGTTGGGGTCATATCTCAAAAGTCTTTG
TGTAGATGGAGCCTTAATGTGTCACATTCTGAAGGATGATATTTTTGCAA
GACAACTCCTTCCAGATGGTAGTATACTGGGTGAAGAAGAAATTCTCGAC
TTGAGAAAAGATTTCGTACTTTCCTATACGTTATAATGTTAGGAAGAGTG
TTTGTTTGCCATTATtatttgtgacgtcatcatcatAGTATTATATCCAG
TACCCGATTCATTTGTTTATTTACTTGTGAACGTCTCTGTACATCCAATG
CATATATAAATCCATTCATTTTATCACGACTAAATCTCTCCAATACATGA
GCAACAAAATGATATCTTGATGATGCAAACTTATTCGAGTCATCATTACC
AAATTGTTTCATCGTTAagttatttagattttttctgatttgtaTTAAGT
TTTACCTGAAATGATTCGAAATATAAATAATGATCAACATACACTAAAGT
TTTAATAAGGAATCTTGAAGATATAATCAAACCCTAATGAAAAGGATTTT
TCCCAGTGGAGCGAGAGCAGGTACATTTAAAGGGTGTTGAGATTTCTCTC
ATAGTGGgcaacacccctccaacccccacctgaaaaaggtcacccccacc
tacatagggttacccccacctgaaatctcATATCAG Run BLAST on NCBI protein sequence of TCONS_00005520-protein >TCONS_00005520-protein ID=TCONS_00005520-protein|Name=TCONS_00005520-protein|organism=Clytia hemisphaerica|type=polypeptide|length=560bp
MGDLYGTILDVCLCKLEDQIEFLQVNQEFEYQDAIYRTGDVLDIRSRRNG
ARCNGLWVRNLSDKQDHEERYLPSFIKGNFTSVQMPLNAYSDRYVDQKTF
NNQNQSIELDEENNSRFILNYRPGQKSETSDESNSIKEGSNSTNQLNNRA
LPPKPGQRTVPPPPKPDQKPPVYQPSSPNQQPVQPSPRSGKKPNGHGYTS
QRPVPVPPRESQLQPDQKPAVFQAHPPNQQPVQTSPESNKHPKRQRPVPL
PPRENHLLLSNGEEDTTRRQFSYDGLPERNERCHDYELMKRQSSYEKRTF
EVQQSAYQRQSLVDFNTNQKFGATSNDIYALNERAFTEQRALNRRPVPVP
SAMLTTNGINFDTNFNRIPSMRIEDKFTSNTPLFTPKKKLNENPHKDSGI
KDIEQKVAKAKISESTKSDIVKFLKTIGCYDEIMKKNFRYLEKTCMENQL
LEDFKSNEVCGRVIYQYLYKGWRPNLKPPQNWKQKEPPTFSVSELYLYLM
SKNSYRLLGSYLKSLCVDGALMCHILKDDIFARQLLPDGSILGEEEILDL
RKDFVLSYTL Run BLAST on NCBI transcript from alignment at sc0000053:407993..410728 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005520 ID=TCONS_00005520|Name=TCONS_00005520|organism=Clytia hemisphaerica|type=transcript|length=2736bp|location=Sequence derived from alignment at sc0000053:407993..410728 (Clytia hemisphaerica)
CTGATATgagatttcaggtgggggtaaccctatgtaggtgggggtgacct
ttttcaggtgggggttggaggggtgttgcCCACTATGAGAGAAATCTCAA
CACCCTTTAAATGTACCTGCTCTCGCTCCACTGGGAAAAATCCTTTTCAT
TAGGGTTTGATTATATCTTCAAGATTCCTTATTAAAACTTTAGTGTATGT
TGATCATTATTTATATTTCGAATCATTTCAGGTAAAACTTAAtacaaatc
agaaaaaatctaaataactTAACGATGAAACAATTTGGTAATGATGACTC
GAATAAGTTTGCATCATCAAGATATCATTTTGTTGCTCATGTATTGGAGA
GATTTAGTCGTGATAAAATGAATGGATTTATATATGCATTGGATGTACAG
AGACGTTCACAAGTAAATAAACAAATGAATCGGGTACTGGATATAATACT
atgatgatgacgtcacaaataATAATGGCAAACAAACACTCTTCCTAACA
TTATAACGTATAGGAAAGTACGAAATCTTTTCTCAAGTCGAGAATTTCTT
CTTCACCCAGTATACTACCATCTGGAAGGAGTTGTCTTGCAAAAATATCA
TCCTTCAGAATGTGACACATTAAGGCTCCATCTACACAAAGACTTTTGAG
ATATGACCCCAACAAGCGGTAAGAATTTTTTGACATCAGATATAAATATA
GTTCAGATACACTGAATGTGGGCGGTTCCTTCTGTTTCCAATTTTGGGGC
GGTTTTAAATTAGGGCGCCATCCTTTGTATAGGTATTGGTAAATGACACG
CCCGCAAACTTCGTTCGATTTAAAGTCTTCCAGTAATTGATTCTCCATAC
AAGTCTTTTCCAAAtatcgaaaattctttttcattatCTCATCGTAACAA
CCTATAGTTTTCAAGAACTTTACAATATCACTTTTAGTTGATTCTGAGAT
TTTAGCTTTAGCAACTTTTTGTTCTATGTCTTTGATTCCTGAGTCTTTGT
GTGGGTTTTCATTTAGTTTCTTTTTGGGCGTAAACAAGGGCGTATTTGAA
GTAAATTTATCTTCAATCCTCATTGAAGGGATTCGATTGAAATTAGTATC
AAAGTTGATTCCATTCGTCGTTAGCATAGCACTCGGTACAGGTACAGGGC
GTCGATTTAGGGCGCGTTGTTCCGTAAACGCCCTTTCGTTTAAGGCGTAA
ATATCATTTGACGTGGCGCCAAATTTCTGATTTGTATTAAAATCTACTAA
TGATTGTCTTTGGTATGCTGACTGTTGTACTTCGAAAGTGCGTTTTTCGT
ACGAACTTTGTCTTTTCATTAATTCGTAGTCATGACATCTCTCGTTTCTT
TCTGGTAACCCATCATATGAAAATTGCCTTCTAGTGGTGTCTTCCTCTCC
GTTGCTAAGTAGTAGGTGGTTTTCTCTTGGTGGTAAGGGAACAGGTCTCT
GTCTTTTAGGATGTTTATTTGATTCAGGTGATGTTTGAACCGGTTGTTGA
TTGGGTGGATGAGCCTGAAAGACAGCTGGTTTCTGGTCTGGTTGTAGCTG
GCTCTCTCTAGGTGGTACGGGAACAGGTCTCTGGCTTGTGTATCCGTGTC
CGTTTGGCTTTTTTCCTGATCTAGGGGATGGTTGAACCGGCTGTTGATTG
GGTGAAGAAGGTTGGTAGACCGGTGGTTTCTGATCAGGTTTTGGAGGAGG
CGGAACAGTCCTTTGACCTGGTTTCGGAGGTAAAGCTCTATTGTTCAGTT
GATTAGTACTGTTGCTACCCTCTTTTATAGAATTTGATTCATCGCTTGTC
TCAGACTTCTGACCTGGTCGGTAATTAAGTATAAATCTGCTATTGTTTTC
TTCATCTAGCTCGATAGATTGGTTTTggttattgaaagttttttgatcgA
CATACCGATCGCTATATGCGTTTAAAGGCATTTGTACTGAAGTGAAATTC
CCTTTAATAAAGCTTGGCAAATAACGTTCCTCGTGATCTTGTTTATCTGA
TAAATTACGGACCCAAAGACCGTTGCATCTGGCTCCATTACGTCGACTTC
GTATATCTAACACGTCACCGGTTCGGTAGATTGCATCCTGATATTCGAAT
TCTTGGTTAACTTGTAAAAATTCGATTTGGTCTTCCAGTTTACACAAACA
AACATCCAGAATGGTTCCATATAAATCTCCCATTATGGTATCGTTTGCTT
TGTAGTGTTATTGATATTACTATCAGATTTGTGAATTACTAAACCAAGAA
AACCTTGACCTTTGACGGTTTATTATGTTTTGAAAAACAACTTCAGAATA
TTGAGCTCATCTTCATAAAAGTTCTCTCGATATCGTTGTAGTCTCCGTCA
CAACACAAATTTATTTTAATCTACAGTATCAGTATTTAGCGATCAGGGCT
ATATCTTTAGGACAAAACTGCAGATCTATTGATTCCACCCACTGATGGTT
GAAATAACTTGTTGCCAATACGAAACAAATCTCCATATAGttccctctga
taagtttttttATAGGCTTGATAAGATTGTGTTTGTAAACTAAAATTCAT
CCatttataaattttaaattcCCCTTTTCAAAAGGTAATCACTTGTCTAA
GAAACCCAGTAAATCTAATTTTATCTGCTTGCCGTCTCTAGTGTTAGACG
ATCTAGCATGTGTCAGCTCAATATATTGTTTCATATATAGCTTCGTTTtg
atcaaaaaaattgatatctcTCTTATAAAAGACGTG Coding sequence (CDS) from alignment at sc0000053:407993..410728 >TCONS_00005520 ID=TCONS_00005520|Name=TCONS_00005520|organism=Clytia hemisphaerica|type=CDS|length=1683bp|location=Sequence derived from alignment at sc0000053:407993..410728 (Clytia hemisphaerica)
TTATAACGTATAGGAAAGTACGAAATCTTTTCTCAAGTCGAGAATTTCTT
CTTCACCCAGTATACTACCATCTGGAAGGAGTTGTCTTGCAAAAATATCA
TCCTTCAGAATGTGACACATTAAGGCTCCATCTACACAAAGACTTTTGAG
ATATGACCCCAACAAGCGGTAAGAATTTTTTGACATCAGATATAAATATA
GTTCAGATACACTGAATGTGGGCGGTTCCTTCTGTTTCCAATTTTGGGGC
GGTTTTAAATTAGGGCGCCATCCTTTGTATAGGTATTGGTAAATGACACG
CCCGCAAACTTCGTTCGATTTAAAGTCTTCCAGTAATTGATTCTCCATAC
AAGTCTTTTCCAAAtatcgaaaattctttttcattatCTCATCGTAACAA
CCTATAGTTTTCAAGAACTTTACAATATCACTTTTAGTTGATTCTGAGAT
TTTAGCTTTAGCAACTTTTTGTTCTATGTCTTTGATTCCTGAGTCTTTGT
GTGGGTTTTCATTTAGTTTCTTTTTGGGCGTAAACAAGGGCGTATTTGAA
GTAAATTTATCTTCAATCCTCATTGAAGGGATTCGATTGAAATTAGTATC
AAAGTTGATTCCATTCGTCGTTAGCATAGCACTCGGTACAGGTACAGGGC
GTCGATTTAGGGCGCGTTGTTCCGTAAACGCCCTTTCGTTTAAGGCGTAA
ATATCATTTGACGTGGCGCCAAATTTCTGATTTGTATTAAAATCTACTAA
TGATTGTCTTTGGTATGCTGACTGTTGTACTTCGAAAGTGCGTTTTTCGT
ACGAACTTTGTCTTTTCATTAATTCGTAGTCATGACATCTCTCGTTTCTT
TCTGGTAACCCATCATATGAAAATTGCCTTCTAGTGGTGTCTTCCTCTCC
GTTGCTAAGTAGTAGGTGGTTTTCTCTTGGTGGTAAGGGAACAGGTCTCT
GTCTTTTAGGATGTTTATTTGATTCAGGTGATGTTTGAACCGGTTGTTGA
TTGGGTGGATGAGCCTGAAAGACAGCTGGTTTCTGGTCTGGTTGTAGCTG
GCTCTCTCTAGGTGGTACGGGAACAGGTCTCTGGCTTGTGTATCCGTGTC
CGTTTGGCTTTTTTCCTGATCTAGGGGATGGTTGAACCGGCTGTTGATTG
GGTGAAGAAGGTTGGTAGACCGGTGGTTTCTGATCAGGTTTTGGAGGAGG
CGGAACAGTCCTTTGACCTGGTTTCGGAGGTAAAGCTCTATTGTTCAGTT
GATTAGTACTGTTGCTACCCTCTTTTATAGAATTTGATTCATCGCTTGTC
TCAGACTTCTGACCTGGTCGGTAATTAAGTATAAATCTGCTATTGTTTTC
TTCATCTAGCTCGATAGATTGGTTTTggttattgaaagttttttgatcgA
CATACCGATCGCTATATGCGTTTAAAGGCATTTGTACTGAAGTGAAATTC
CCTTTAATAAAGCTTGGCAAATAACGTTCCTCGTGATCTTGTTTATCTGA
TAAATTACGGACCCAAAGACCGTTGCATCTGGCTCCATTACGTCGACTTC
GTATATCTAACACGTCACCGGTTCGGTAGATTGCATCCTGATATTCGAAT
TCTTGGTTAACTTGTAAAAATTCGATTTGGTCTTCCAGTTTACACAAACA
AACATCCAGAATGGTTCCATATAAATCTCCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005520-exon-sc0000053-1491911889:407993..410728 | TCONS_00005520-exon-sc0000053-1491911889:407993..410728 | Clytia hemisphaerica | exon |
| TCONS_00005520-exon-sc0000053-1510915933:407993..410728 | TCONS_00005520-exon-sc0000053-1510915933:407993..410728 | Clytia hemisphaerica | exon |
| TCONS_00005520-exon-sc0000053-1575043694:407993..410728 | TCONS_00005520-exon-sc0000053-1575043694:407993..410728 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000053 | supercontig | sc0000053:407993..410728 . |
Blast
The following BLAST results are available for this feature:
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