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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005517 ID=TCONS_00005517|Name=TCONS_00005517|organism=Clytia hemisphaerica|type=transcript|length=1506bp
TACATATCTTCAATTGATAGAGGAAACGATTCAATTATATTTAATCTCTT
TTATCTATCTAAGGTCAACGAATCTTTGTGGCTTTTTAAACTGAACAAAT
ACAAACTACCTCTTACGAGATTATTAGAGACATGACAAAGTAGTGTACTC
GAAGGTTTCTCAATATGGTAGTGTATATATTCGTGCTCTTTTTTTGAGTA
TCTATTCATGTGCTAGCAGTAATAATGATCAGATAAATTTATCACATAAT
TTCCAACGGCTGCTGAGTTGTTCTGAAAAAAGGAACATTACCATTTTCAC
TCATGAGATAACAGCAAGTTATTTCGACAGATTTTTGGAGCTGTTGCAAG
ATCTAATCAACAATGAATGGTGCTATGTTGTTAATATTTATCTACCAGAC
GAGGATCGTGTCACCAGATGGCATCAACGGAGGAATATGAACCGCATTGA
AAGAAACTTCGCTTTAAATCTCCACAGAACGGGTTCCGTACCTTATCTAA
GACTGGATAGACTGATAGAAAAGTTTCATAACGAATCTCTTCTGTCTGGA
AATGATTCTGCGACGGCTAAACAAACTTTCGTTTATATATTTGATGAATT
ATCTTCTTACGTttcaaaagtgataaaaaacctTGGAAGACTACGGGAAA
CACATTATTGGGATGTTATTATATACACGTCGTCAGagtttctttatgat
gatgttCTGAAACTAAATATACCACTTCACAACATCGTTTTAAAAAGCAC
AAAGGTTTTTATGGATTTGTCGCTCAAAAGTTTAATAGATGTCATTAAAA
GACCGGATTATAATCGATATGATTTTTACCGTTCGATACCTTTCCAACCA
GGCTTTTTCAATCATACTTGTTTgagtaaaataaagaaaattcataTTGC
AATGCCAAAGCTGGATGATCTTTACCTTCCAATGGCCATGGCGATCCTTG
ATAACGAGAACAAGCGACgcaagaaaggaggaaatttggAGCCAATGGAA
ATCATATTTTACCCCATCTATTTTACACCAAATCGATTGAACTATCTAAA
CAAAGATCTAAAATTCCTTAATTTCCAACAACATTACCAAATCTCTGACC
GAGTTGAGGGGGATGTCTACCTTTCGGTTCTTGACGATCCTGAGTCGATC
CATAATTGTTACTTCCTTTACTCAGAGGAGGACTTTTCTTATCGTCATCC
ATCAGTCACGTTTGAAAGGTGCCGTGGTCAAAATGATAGAAAATGGCGAA
CGTTTCAATCTCCTGATGAATTTTATGACCGGTTGAACACTGACATTTGT
AACCATAATCAAATCTCTTGACTTGAAGCTTACTAATTTTAATTTATCTT
AATCTTTTATTTATAGTAGGAGACCAACCCTTAGGATGAATTGTACTCTA
ACTAGCAGAATTTTGAACCTCAAAAGCCTTTATTTCTTTAATTGTTTGAG
TACACGACTCGTTGGAGTATACTTTTATGCTTATATACagtttcatgctc
tttccg Run BLAST on NCBI protein sequence of TCONS_00005517-protein >TCONS_00005517-protein ID=TCONS_00005517-protein|Name=TCONS_00005517-protein|organism=Clytia hemisphaerica|type=polypeptide|length=294bp
MNRIERNFALNLHRTGSVPYLRLDRLIEKFHNESLLSGNDSATAKQTFVY
IFDELSSYVSKVIKNLGRLRETHYWDVIIYTSSEFLYDDVLKLNIPLHNI
VLKSTKVFMDLSLKSLIDVIKRPDYNRYDFYRSIPFQPGFFNHTCLSKIK
KIHIAMPKLDDLYLPMAMAILDNENKRRKKGGNLEPMEIIFYPIYFTPNR
LNYLNKDLKFLNFQQHYQISDRVEGDVYLSVLDDPESIHNCYFLYSEEDF
SYRHPSVTFERCRGQNDRKWRTFQSPDEFYDRLNTDICNHNQIS Run BLAST on NCBI transcript from alignment at sc0000053:332069..333574 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005517 ID=TCONS_00005517|Name=TCONS_00005517|organism=Clytia hemisphaerica|type=transcript|length=1506bp|location=Sequence derived from alignment at sc0000053:332069..333574 (Clytia hemisphaerica)
cggaaagagcatgaaactGTATATAAGCATAAAAGTATACTCCAACGAGT
CGTGTACTCAAACAATTAAAGAAATAAAGGCTTTTGAGGTTCAAAATTCT
GCTAGTTAGAGTACAATTCATCCTAAGGGTTGGTCTCCTACTATAAATAA
AAGATTAAGATAAATTAAAATTAGTAAGCTTCAAGTCAAGAGATTTGATT
ATGGTTACAAATGTCAGTGTTCAACCGGTCATAAAATTCATCAGGAGATT
GAAACGTTCGCCATTTTCTATCATTTTGACCACGGCACCTTTCAAACGTG
ACTGATGGATGACGATAAGAAAAGTCCTCCTCTGAGTAAAGGAAGTAACA
ATTATGGATCGACTCAGGATCGTCAAGAACCGAAAGGTAGACATCCCCCT
CAACTCGGTCAGAGATTTGGTAATGTTGTTGGAAATTAAGGAATTTTAGA
TCTTTGTTTAGATAGTTCAATCGATTTGGTGTAAAATAGATGGGGTAAAA
TATGATTTCCATTGGCTccaaatttcctcctttcttgcGTCGCTTGTTCT
CGTTATCAAGGATCGCCATGGCCATTGGAAGGTAAAGATCATCCAGCTTT
GGCATTGCAAtatgaattttctttattttactcAAACAAGTATGATTGAA
AAAGCCTGGTTGGAAAGGTATCGAACGGTAAAAATCATATCGATTATAAT
CCGGTCTTTTAATGACATCTATTAAACTTTTGAGCGACAAATCCATAAAA
ACCTTTGTGCTTTTTAAAACGATGTTGTGAAGTGGTATATTTAGTTTCAG
aacatcatcataaagaaactCTGACGACGTGTATATAATAACATCCCAAT
AATGTGTTTCCCGTAGTCTTCCAaggttttttatcacttttgaaACGTAA
GAAGATAATTCATCAAATATATAAACGAAAGTTTGTTTAGCCGTCGCAGA
ATCATTTCCAGACAGAAGAGATTCGTTATGAAACTTTTCTATCAGTCTAT
CCAGTCTTAGATAAGGTACGGAACCCGTTCTGTGGAGATTTAAAGCGAAG
TTTCTTTCAATGCGGTTCATATTCCTCCGTTGATGCCATCTGGTGACACG
ATCCTCGTCTGGTAGATAAATATTAACAACATAGCACCATTCATTGTTGA
TTAGATCTTGCAACAGCTCCAAAAATCTGTCGAAATAACTTGCTGTTATC
TCATGAGTGAAAATGGTAATGTTCCTTTTTTCAGAACAACTCAGCAGCCG
TTGGAAATTATGTGATAAATTTATCTGATCATTATTACTGCTAGCACATG
AATAGATACTCAAAAAAAGAGCACGAATATATACACTACCATATTGAGAA
ACCTTCGAGTACACTACTTTGTCATGTCTCTAATAATCTCGTAAGAGGTA
GTTTGTATTTGTTCAGTTTAAAAAGCCACAAAGATTCGTTGACCTTAGAT
AGATAAAAGAGATTAAATATAATTGAATCGTTTCCTCTATCAATTGAAGA
TATGTA Coding sequence (CDS) from alignment at sc0000053:332069..333574 >TCONS_00005517 ID=TCONS_00005517|Name=TCONS_00005517|organism=Clytia hemisphaerica|type=CDS|length=885bp|location=Sequence derived from alignment at sc0000053:332069..333574 (Clytia hemisphaerica)
TCAAGAGATTTGATTATGGTTACAAATGTCAGTGTTCAACCGGTCATAAA
ATTCATCAGGAGATTGAAACGTTCGCCATTTTCTATCATTTTGACCACGG
CACCTTTCAAACGTGACTGATGGATGACGATAAGAAAAGTCCTCCTCTGA
GTAAAGGAAGTAACAATTATGGATCGACTCAGGATCGTCAAGAACCGAAA
GGTAGACATCCCCCTCAACTCGGTCAGAGATTTGGTAATGTTGTTGGAAA
TTAAGGAATTTTAGATCTTTGTTTAGATAGTTCAATCGATTTGGTGTAAA
ATAGATGGGGTAAAATATGATTTCCATTGGCTccaaatttcctcctttct
tgcGTCGCTTGTTCTCGTTATCAAGGATCGCCATGGCCATTGGAAGGTAA
AGATCATCCAGCTTTGGCATTGCAAtatgaattttctttattttactcAA
ACAAGTATGATTGAAAAAGCCTGGTTGGAAAGGTATCGAACGGTAAAAAT
CATATCGATTATAATCCGGTCTTTTAATGACATCTATTAAACTTTTGAGC
GACAAATCCATAAAAACCTTTGTGCTTTTTAAAACGATGTTGTGAAGTGG
TATATTTAGTTTCAGaacatcatcataaagaaactCTGACGACGTGTATA
TAATAACATCCCAATAATGTGTTTCCCGTAGTCTTCCAaggttttttatc
acttttgaaACGTAAGAAGATAATTCATCAAATATATAAACGAAAGTTTG
TTTAGCCGTCGCAGAATCATTTCCAGACAGAAGAGATTCGTTATGAAACT
TTTCTATCAGTCTATCCAGTCTTAGATAAGGTACGGAACCCGTTCTGTGG
AGATTTAAAGCGAAGTTTCTTTCAATGCGGTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005517-exon-sc0000053-1491911889:332069..333574 | TCONS_00005517-exon-sc0000053-1491911889:332069..333574 | Clytia hemisphaerica | exon |
| TCONS_00005517-exon-sc0000053-1510915933:332069..333574 | TCONS_00005517-exon-sc0000053-1510915933:332069..333574 | Clytia hemisphaerica | exon |
| TCONS_00005517-exon-sc0000053-1575043694:332069..333574 | TCONS_00005517-exon-sc0000053-1575043694:332069..333574 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000053 | supercontig | sc0000053:332069..333574 . |
Blast
The following BLAST results are available for this feature:
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