TCONS_00005516 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005516
Unique NameTCONS_00005516
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length632

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005516 ID=TCONS_00005516|Name=TCONS_00005516|organism=Clytia hemisphaerica|type=transcript|length=632bp
GTGGTGTACCCTTTTTGAGCACAGAAAAAGGTCACTCCCTGTGGAGTAAG
TGCTGGTGGTGTGGCAAAGGTTTTCCCTATATGGCAGTTACCTCAATCCC
ATTAATTTTTGTGCCCCTTTTATTTCCAGACAGAATACGTGCATAAGAAT
AAAGGGGACTGAGATAGGCCTATTTTTGCGCAGTTGGCTGCAGGCATATT
AAAGGATGCGCAGATTAGTCATCATTCTCGTCATCATAATCCTTTAATTG
AGGTCTGTAAATGATGTATCAGGTGGCTTCGAGCATTAGAAACAATAAGG
TATAGTAAGAAAAAGAATCGTTCTGAATGTGTAGAAATCTCATCTTAAGG
CTCTTTTTATAAAATGTGACCTCAACTTATGTCTCTCGGGTGTAAACTCC
CctggtactaggtttgcgaaaTGACGGGTATATCCgagccaaagtttgaa
aatcgacccttagagagactgaatttcatttttgacgtttttgccaccct
tagTGAGTGGTGTATTTCCTCAAAATTTCAgccgaaattttcaaatttta
aaaatttatgacATTGTGAGGGAGgtggtttttgatttttgtaatttCCG
AACTCTTTTAGAGACttttaattgctttttaa
Run BLAST on NCBI

transcript from alignment at sc0000053:328408..329039

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005516 ID=TCONS_00005516|Name=TCONS_00005516|organism=Clytia hemisphaerica|type=transcript|length=632bp|location=Sequence derived from alignment at sc0000053:328408..329039 (Clytia hemisphaerica)
ttaaaaagcaattaaaaGTCTCTAAAAGAGTTCGGaaattacaaaaatca
aaaaccacCTCCCTCACAATgtcataaatttttaaaatttgaaaatttcg
gcTGAAATTTTGAGGAAATACACCACTCActaagggtggcaaaaacgtca
aaaatgaaattcagtctctctaagggtcgattttcaaactttggctcGGA
TATACCCGTCAtttcgcaaacctagtaccagGGGAGTTTACACCCGAGAG
ACATAAGTTGAGGTCACATTTTATAAAAAGAGCCTTAAGATGAGATTTCT
ACACATTCAGAACGATTCTTTTTCTTACTATACCTTATTGTTTCTAATGC
TCGAAGCCACCTGATACATCATTTACAGACCTCAATTAAAGGATTATGAT
GACGAGAATGATGACTAATCTGCGCATCCTTTAATATGCCTGCAGCCAAC
TGCGCAAAAATAGGCCTATCTCAGTCCCCTTTATTCTTATGCACGTATTC
TGTCTGGAAATAAAAGGGGCACAAAAATTAATGGGATTGAGGTAACTGCC
ATATAGGGAAAACCTTTGCCACACCACCAGCACTTACTCCACAGGGAGTG
ACCTTTTTCTGTGCTCAAAAAGGGTACACCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003134XLOC_003134Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005516-exon-sc0000053-1491911889:328408..329039TCONS_00005516-exon-sc0000053-1491911889:328408..329039Clytia hemisphaericaexon
TCONS_00005516-exon-sc0000053-1510915933:328408..329039TCONS_00005516-exon-sc0000053-1510915933:328408..329039Clytia hemisphaericaexon
TCONS_00005516-exon-sc0000053-1575043694:328408..329039TCONS_00005516-exon-sc0000053-1575043694:328408..329039Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000053supercontigsc0000053:328408..329039 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.167743	0	0.759711	0.929073	0.113106	0.0893777	0	0	0.282708	0	0	0	0	0	0	0.153327	0.0629622	0	0.0891575	0	0	0	0.0961657	0.0874286	0.0900494	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005516 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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