TCONS_00005514 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005514
Unique NameTCONS_00005514
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length499

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005514 ID=TCONS_00005514|Name=TCONS_00005514|organism=Clytia hemisphaerica|type=transcript|length=499bp
CACGACTTGACAGCGCCAGTAACATCAAACCCTTTGAAATCGTAATCTCG
CTCACGACTGTAGATGGTTGTTGGGTTGCATTCAGGTTGTGCTTCGGCGT
CCACTCCCAATTTCAAGTAAGGTGCTGCCCAGTTATTTCCATTAGATGCA
CGGTAGGCCGTAGCTTGATTTTCAGCCCAATATTTCTTGACACGGTGGAT
GTGGATTGTGTAATCGAGCCACGGTTGTGTGGAGACGGGTTGAATTGACC
AGCGGTGAGCTGCTACAAAATGGAGTTGCATTCTTGCCCAAATAATTTTA
TCAGCGGGACAATCTTTTGGCAGATCCTCGAATTGAATCAAGGTGCGTTT
CAAAGGGAAATGTCGGAGATTGCCAACAATGAGTTGATTAATCCATTGCC
GATCTTTATTGCTATGTCCTTCTAACCAAACATCTTTGCGTGCTTCTAAA
ATGTAATGATTTCCATATCCTTCATCTCTGGTCTTTGTTACACAatgta
Run BLAST on NCBI

protein sequence of TCONS_00005514-protein

>TCONS_00005514-protein ID=TCONS_00005514-protein|Name=TCONS_00005514-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
HCVTKTRDEGYGNHYILEARKDVWLEGHSNKDRQWINQLIVGNLRHFPLK
RTLIQFEDLPKDCPADKIIWARMQLHFVAAHRWSIQPVSTQPWLDYTIHI
HRVKKYWAENQATAYRASNGNNWAAPYLKLGVDAEAQPECNPTTIYSRER
DYDFKGFDVTGAVKS
Run BLAST on NCBI

transcript from alignment at sc0000053:302262..302760

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005514 ID=TCONS_00005514|Name=TCONS_00005514|organism=Clytia hemisphaerica|type=transcript|length=499bp|location=Sequence derived from alignment at sc0000053:302262..302760 (Clytia hemisphaerica)
tacatTGTGTAACAAAGACCAGAGATGAAGGATATGGAAATCATTACATT
TTAGAAGCACGCAAAGATGTTTGGTTAGAAGGACATAGCAATAAAGATCG
GCAATGGATTAATCAACTCATTGTTGGCAATCTCCGACATTTCCCTTTGA
AACGCACCTTGATTCAATTCGAGGATCTGCCAAAAGATTGTCCCGCTGAT
AAAATTATTTGGGCAAGAATGCAACTCCATTTTGTAGCAGCTCACCGCTG
GTCAATTCAACCCGTCTCCACACAACCGTGGCTCGATTACACAATCCACA
TCCACCGTGTCAAGAAATATTGGGCTGAAAATCAAGCTACGGCCTACCGT
GCATCTAATGGAAATAACTGGGCAGCACCTTACTTGAAATTGGGAGTGGA
CGCCGAAGCACAACCTGAATGCAACCCAACAACCATCTACAGTCGTGAGC
GAGATTACGATTTCAAAGGGTTTGATGTTACTGGCGCTGTCAAGTCGTG

Coding sequence (CDS) from alignment at sc0000053:302262..302760

>TCONS_00005514 ID=TCONS_00005514|Name=TCONS_00005514|organism=Clytia hemisphaerica|type=CDS|length=495bp|location=Sequence derived from alignment at sc0000053:302262..302760 (Clytia hemisphaerica)
catTGTGTAACAAAGACCAGAGATGAAGGATATGGAAATCATTACATTTT
AGAAGCACGCAAAGATGTTTGGTTAGAAGGACATAGCAATAAAGATCGGC
AATGGATTAATCAACTCATTGTTGGCAATCTCCGACATTTCCCTTTGAAA
CGCACCTTGATTCAATTCGAGGATCTGCCAAAAGATTGTCCCGCTGATAA
AATTATTTGGGCAAGAATGCAACTCCATTTTGTAGCAGCTCACCGCTGGT
CAATTCAACCCGTCTCCACACAACCGTGGCTCGATTACACAATCCACATC
CACCGTGTCAAGAAATATTGGGCTGAAAATCAAGCTACGGCCTACCGTGC
ATCTAATGGAAATAACTGGGCAGCACCTTACTTGAAATTGGGAGTGGACG
CCGAAGCACAACCTGAATGCAACCCAACAACCATCTACAGTCGTGAGCGA
GATTACGATTTCAAAGGGTTTGATGTTACTGGCGCTGTCAAGTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003132XLOC_003132Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005514-proteinTCONS_00005514-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005514-exon-sc0000053-1491911889:302262..302760TCONS_00005514-exon-sc0000053-1491911889:302262..302760Clytia hemisphaericaexon
TCONS_00005514-exon-sc0000053-1510915933:302262..302760TCONS_00005514-exon-sc0000053-1510915933:302262..302760Clytia hemisphaericaexon
TCONS_00005514-exon-sc0000053-1575043694:302262..302760TCONS_00005514-exon-sc0000053-1575043694:302262..302760Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000053supercontigsc0000053:302262..302760 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.238596	0	0	0	0.260736	0.314567	0	0	0	0	0.244427	10.1703	5.74571	2.08401	14.2388	0.826542	3.01219	0.130047	0	0	0.173082	0.140269	0	0.131348	0.23445	0	0.537077	0	0.138343
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005514 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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