TCONS_00005511 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005511
Unique NameTCONS_00005511
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length540

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005511 ID=TCONS_00005511|Name=TCONS_00005511|organism=Clytia hemisphaerica|type=transcript|length=540bp
NNccctaaaaccgtcccagtctttttctcgcacataaagacaatagaaaa
aagtgtaaaaaaaggattggatcgagtttagggggggggggtaaattaaa
taataaacgGTCAAAAAGTGTATTTGTACTTTTGTAATTTGTAATTAATT
GCTTGAATATGCGAGGGTCTAGTATCATCAGAAagtctaaatttttaatc
tagTTTTTATTTTACAATAAGCAATAATTATAAGCAGAGGGGATAATCTT
TGGCTGGCTTTTCCCTGAAAAGTTGTCGTAGCCAACTTCCAAATTTATTg
gtaataatattgaattttttttatttattatctaactaaaattttgaaaa
ctcaagaaGGCATTTATATTTTGCCTACCGATTTTATATGTTAAAGACTA
GCTACTAAGTTAGTTTTTGAGAGTAGGCTTTAGGGATTCTTAATCACCCT
TTTGCAATCTCGaaagaaaaaaggttttaatgattattttttgttttgtt
ttattctccgtttttgttttcattttcattttcattcttt
Run BLAST on NCBI

transcript from alignment at sc0000053:182860..183399

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005511 ID=TCONS_00005511|Name=TCONS_00005511|organism=Clytia hemisphaerica|type=transcript|length=540bp|location=Sequence derived from alignment at sc0000053:182860..183399 (Clytia hemisphaerica)
aaagaatgaaaatgaaaatgaaaacaaaaacggagaataaaacaaaacaa
aaaataatcattaaaaccttttttctttCGAGATTGCAAAAGGGTGATTA
AGAATCCCTAAAGCCTACTCTCAAAAACTAACTTAGTAGCTAGTCTTTAA
CATATAAAATCGGTAGGCAAAATATAAATGCCttcttgagttttcaaaat
tttagttagataataaataaaaaaaattcaatattattaccAATAAATTT
GGAAGTTGGCTACGACAACTTTTCAGGGAAAAGCCAGCCAAAGATTATCC
CCTCTGCTTATAATTATTGCTTATTGTAAAATAAAAActagattaaaaat
ttagactTTCTGATGATACTAGACCCTCGCATATTCAAGCAATTAATTAC
AAATTACAAAAGTACAAATACACTTTTTGACcgtttattatttaatttac
cccccccccctaaactcgatccaatcctttttttacacttttttctattg
tctttatgtgcgagaaaaagactgggacggttttagggNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003129XLOC_003129Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005511-exon-sc0000053-1491911889:182860..183399TCONS_00005511-exon-sc0000053-1491911889:182860..183399Clytia hemisphaericaexon
TCONS_00005511-exon-sc0000053-1510915933:182860..183399TCONS_00005511-exon-sc0000053-1510915933:182860..183399Clytia hemisphaericaexon
TCONS_00005511-exon-sc0000053-1575043694:182860..183399TCONS_00005511-exon-sc0000053-1575043694:182860..183399Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000053supercontigsc0000053:182860..183399 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.9081	15.233	8.42368	7.55657	12.7569	6.05834	22.8926	25.2884	13.9197	12.7349	16.164	9.40354	7.22049	5.3421	5.81942	8.29649	9.72154	8.6039	10.7956	8.88083	15.8275	12.3273	18.3873	18.2811	3.14625	7.07867	14.6233	17.389	22.8153	14.7939
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005511 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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