TCONS_00005510 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005510
Unique NameTCONS_00005510
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length877

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005510 ID=TCONS_00005510|Name=TCONS_00005510|organism=Clytia hemisphaerica|type=transcript|length=877bp
TTTCTGACTTGCAAGTCAAATCGAGAAGAAGCTCAATACTTCGATTCATT
TTAATCTCCAACGATTGGGAATGCTGCTTAGCTGAAgtgatttcattttc
aagttCCTTGATTCGCTTCCACATATCTTTCTTGCTTGAGCGATATGTGT
GGACAGGATTCTGTTGTGATGTTCTTCTTGAGGTGCTCGGTTGCTCAGTA
TCGGTATTTGATGTCACTGTATTTGGAATATGGTTGAGTTGGTTAAACTG
AACGATGTGAGGCTCGTGGCGACGATCCATCGATGATAGTTGAGCAGATT
GTTCTCCCTGATTGCTCGTATGTGTCTGTTGAATCTCAAAGTCTGTATCT
TGGTTCATCGAGACTGATGATGTTATCTCATCTCCACCTGCTGTATTGAC
CATGAGTTGGTTGGTTATTTCATCATCATTACCAGAGGAATGCTCAGTAA
CTGCAGCAGTAGATCTTTTAAGATCTTCAGCTAATCTCCTTACAGCAGAC
TGATAAACACCATTATCACCAACGTTGGAATTCCAATTTACTTCTTGtgg
taaattagttgaaacatcTGGTAAATTACTGTTGAAATGAACATTAAACA
GATTCTGTAAGAGGGTACAATATTCATCATCAATGTTCGTGGGTGGTATG
ACAGTCCACCCCTCTTCCTCTTCGTTGCCATCGCAATCATCACCGTCTTG
TCGAGCAGACCTTTTGGGAAATACTGTAATCCAAAATCTCTGAATCCTCC
GACCAAAGGTTATAACTTCTTTTTGTAATCTCGAAAAACAGcccattttt
aaaatttgttcaAGTTTCTGTTCTGGTCTTTGTTCAGTAGCACTGTCCTT
TTTATAATCTCTGTCTCTTTCTCTCCT
Run BLAST on NCBI

protein sequence of TCONS_00005510-protein

>TCONS_00005510-protein ID=TCONS_00005510-protein|Name=TCONS_00005510-protein|organism=Clytia hemisphaerica|type=polypeptide|length=292bp
RRERDRDYKKDSATEQRPEQKLEQILKMGCFSRLQKEVITFGRRIQRFWI
TVFPKRSARQDGDDCDGNEEEEGWTVIPPTNIDDEYCTLLQNLFNVHFNS
NLPDVSTNLPQEVNWNSNVGDNGVYQSAVRRLAEDLKRSTAAVTEHSSGN
DDEITNQLMVNTAGGDEITSSVSMNQDTDFEIQQTHTSNQGEQSAQLSSM
DRRHEPHIVQFNQLNHIPNTVTSNTDTEQPSTSRRTSQQNPVHTYRSSKK
DMWKRIKELENEITSAKQHSQSLEIKMNRSIELLLDLTCKSE
Run BLAST on NCBI

transcript from alignment at sc0000053:166636..167512

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005510 ID=TCONS_00005510|Name=TCONS_00005510|organism=Clytia hemisphaerica|type=transcript|length=877bp|location=Sequence derived from alignment at sc0000053:166636..167512 (Clytia hemisphaerica)
AGGAGAGAAAGAGACAGAGATTATAAAAAGGACAGTGCTACTGAACAAAG
ACCAGAACAGAAACTtgaacaaattttaaaaatgggCTGTTTTTCGAGAT
TACAAAAAGAAGTTATAACCTTTGGTCGGAGGATTCAGAGATTTTGGATT
ACAGTATTTCCCAAAAGGTCTGCTCGACAAGACGGTGATGATTGCGATGG
CAACGAAGAGGAAGAGGGGTGGACTGTCATACCACCCACGAACATTGATG
ATGAATATTGTACCCTCTTACAGAATCTGTTTAATGTTCATTTCAACAGT
AATTTACCAgatgtttcaactaatttaccaCAAGAAGTAAATTGGAATTC
CAACGTTGGTGATAATGGTGTTTATCAGTCTGCTGTAAGGAGATTAGCTG
AAGATCTTAAAAGATCTACTGCTGCAGTTACTGAGCATTCCTCTGGTAAT
GATGATGAAATAACCAACCAACTCATGGTCAATACAGCAGGTGGAGATGA
GATAACATCATCAGTCTCGATGAACCAAGATACAGACTTTGAGATTCAAC
AGACACATACGAGCAATCAGGGAGAACAATCTGCTCAACTATCATCGATG
GATCGTCGCCACGAGCCTCACATCGTTCAGTTTAACCAACTCAACCATAT
TCCAAATACAGTGACATCAAATACCGATACTGAGCAACCGAGCACCTCAA
GAAGAACATCACAACAGAATCCTGTCCACACATATCGCTCAAGCAAGAAA
GATATGTGGAAGCGAATCAAGGaacttgaaaatgaaatcacTTCAGCTAA
GCAGCATTCCCAATCGTTGGAGATTAAAATGAATCGAAGTATTGAGCTTC
TTCTCGATTTGACTTGCAAGTCAGAAA

Coding sequence (CDS) from alignment at sc0000053:166636..167512

>TCONS_00005510 ID=TCONS_00005510|Name=TCONS_00005510|organism=Clytia hemisphaerica|type=CDS|length=876bp|location=Sequence derived from alignment at sc0000053:166636..167512 (Clytia hemisphaerica)
AGGAGAGAAAGAGACAGAGATTATAAAAAGGACAGTGCTACTGAACAAAG
ACCAGAACAGAAACTtgaacaaattttaaaaatgggCTGTTTTTCGAGAT
TACAAAAAGAAGTTATAACCTTTGGTCGGAGGATTCAGAGATTTTGGATT
ACAGTATTTCCCAAAAGGTCTGCTCGACAAGACGGTGATGATTGCGATGG
CAACGAAGAGGAAGAGGGGTGGACTGTCATACCACCCACGAACATTGATG
ATGAATATTGTACCCTCTTACAGAATCTGTTTAATGTTCATTTCAACAGT
AATTTACCAgatgtttcaactaatttaccaCAAGAAGTAAATTGGAATTC
CAACGTTGGTGATAATGGTGTTTATCAGTCTGCTGTAAGGAGATTAGCTG
AAGATCTTAAAAGATCTACTGCTGCAGTTACTGAGCATTCCTCTGGTAAT
GATGATGAAATAACCAACCAACTCATGGTCAATACAGCAGGTGGAGATGA
GATAACATCATCAGTCTCGATGAACCAAGATACAGACTTTGAGATTCAAC
AGACACATACGAGCAATCAGGGAGAACAATCTGCTCAACTATCATCGATG
GATCGTCGCCACGAGCCTCACATCGTTCAGTTTAACCAACTCAACCATAT
TCCAAATACAGTGACATCAAATACCGATACTGAGCAACCGAGCACCTCAA
GAAGAACATCACAACAGAATCCTGTCCACACATATCGCTCAAGCAAGAAA
GATATGTGGAAGCGAATCAAGGaacttgaaaatgaaatcacTTCAGCTAA
GCAGCATTCCCAATCGTTGGAGATTAAAATGAATCGAAGTATTGAGCTTC
TTCTCGATTTGACTTGCAAGTCAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003128XLOC_003128Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005510-exon-sc0000053-1491911889:166636..167512TCONS_00005510-exon-sc0000053-1491911889:166636..167512Clytia hemisphaericaexon
TCONS_00005510-exon-sc0000053-1510915933:166636..167512TCONS_00005510-exon-sc0000053-1510915933:166636..167512Clytia hemisphaericaexon
TCONS_00005510-exon-sc0000053-1575043694:166636..167512TCONS_00005510-exon-sc0000053-1575043694:166636..167512Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005510-proteinTCONS_00005510-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000053supercontigsc0000053:166636..167512 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0531104	0.051791	0.300672	0.117664	0.0716223	0.0565969	3.27753	4.98612	5.72865	29.3259	4.25083	3.96158	13.0338	16.2503	23.885	17.5413	3.58828	5.18988	8.18634	20.2049	0.359451	0.0751404	1.88776	1.55016	6.04436	8.95682	7.20966	8.00523	12.615	7.02691
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005510 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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