TCONS_00005509 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005509
Unique NameTCONS_00005509
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1383

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005509 ID=TCONS_00005509|Name=TCONS_00005509|organism=Clytia hemisphaerica|type=transcript|length=1383bp
TTTATTCGAAGTTCTATTGACTGAGTTTTTCTATAATATGAACTAATCCG
CAGTTTAgtctaaaaaaagaaattttttttataatttccatTGGAATCTT
CCCTTATTCAAATAAATTGGGTATTACTTCAGTTCCAAATGGAGAGGACT
CAATCTTAATATGGTTTACTATCAAAATAAAACTCTGTCGAATAATCGAT
AAACTaccattaaaaaaaatatcaaaatacccataatttaagaaaaagtt
aaagtcgacttacaaaaataaaatcaaaaattaccaATTCTAGTTACCTA
CCaagttttcaaactttttttgccattttaggTATTAGTAAAGTATCTGA
TTCATTTTTTGGAGACCACTACCAGAACCTTAAACTACTAAaccaaaatt
caataaaaattcaCTTCAATTAACAACAGCAAAAGTATTAGAAATCACTG
GAAATCGTCAACAGATTTCCTTTTTCCAGTAAATATTTCAAGCTCTTGAA
AGGGTTTCAACCTTTTCATATCTTTGTCTTTTCGAACAATAACATTAGGT
AATTTTcgtattttacaaatttccaaGGCAGTATCAATCTTAAATTCATT
TGTACATGTTTTGACTAAATTATCATATGTCAATTCATTCATATCCAATT
CGATTTCAATAAAATCCATCTCGTTTGATTTTGGATATCTAACTCTCAAA
ACAAGCTCATCATCTTCAGAATCATTACCTGAAATAACATGACTTTGAGA
TGCAGTTGTCCCAGTAGTTACACTTGGCTGAAACGCCGCAGGTGGATAAA
CAGTTCTTTGTTGTTGGTTCGCTCCGTAAGGAAAAACAGGATGAGCTAAA
TAATTAGGTACAAATTTCACACCAGTTGTATCGTTTTCTCCAGCCTGAAC
TGGTTTAAAAGAGCTTCCAACATTACTTTTGTCTTTCAAAATGTCCTTGA
CAGAATCTAAATCAGCGACTTCAAGTGCGGTTTGTTGTTTATCATTCAAC
ACATTGGGATCAGCATTTGATCTCAATAGAACCTCAACTAAGTTGGTATG
TCCACGTTTAGCAGCCCAGTGTAAACAGGTCCAACCGTTCATCTTGTTTT
TTGAGTTGACATCGGCCCCTTGTGTTAAGTACCTGTATACACTTTCATTG
TCACCCATACAACATGCTTCACGTAATTTTTCGTTCAATTCTTCCATCAT
ACTCATTTTGcccttttttatattttaattttttccctttttttcttttc
ttcactAAAAAATATGAAGGATATACATCAAGGATAACATGAAATCGATA
TTCTGAAAAAGTCAAGTCAAAGAATTTGAACCCTTTCTGCGGATtttgcg
gatttgggtgtcatccgcaaaaatccgcgaaat
Run BLAST on NCBI

protein sequence of TCONS_00005509-protein

>TCONS_00005509-protein ID=TCONS_00005509-protein|Name=TCONS_00005509-protein|organism=Clytia hemisphaerica|type=polypeptide|length=253bp
MSMMEELNEKLREACCMGDNESVYRYLTQGADVNSKNKMNGWTCLHWAAK
RGHTNLVEVLLRSNADPNVLNDKQQTALEVADLDSVKDILKDKSNVGSSF
KPVQAGENDTTGVKFVPNYLAHPVFPYGANQQQRTVYPPAAFQPSVTTGT
TASQSHVISGNDSEDDELVLRVRYPKSNEMDFIEIELDMNELTYDNLVKT
CTNEFKIDTALEICKIRKLPNVIVRKDKDMKRLKPFQELEIFTGKRKSVD
DFQ
Run BLAST on NCBI

transcript from alignment at sc0000053:84189..85571

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005509 ID=TCONS_00005509|Name=TCONS_00005509|organism=Clytia hemisphaerica|type=transcript|length=1383bp|location=Sequence derived from alignment at sc0000053:84189..85571 (Clytia hemisphaerica)
atttcgcggatttttgcggatgacacccaaatccgcaaaATCCGCAGAAA
GGGTTCAAATTCTTTGACTTGACTTTTTCAGAATATCGATTTCATGTTAT
CCTTGATGTATATCCTTCATATTTTTTagtgaagaaaagaaaaaaaggga
aaaaattaaaatataaaaaagggCAAAATGAGTATGATGGAAGAATTGAA
CGAAAAATTACGTGAAGCATGTTGTATGGGTGACAATGAAAGTGTATACA
GGTACTTAACACAAGGGGCCGATGTCAACTCAAAAAACAAGATGAACGGT
TGGACCTGTTTACACTGGGCTGCTAAACGTGGACATACCAACTTAGTTGA
GGTTCTATTGAGATCAAATGCTGATCCCAATGTGTTGAATGATAAACAAC
AAACCGCACTTGAAGTCGCTGATTTAGATTCTGTCAAGGACATTTTGAAA
GACAAAAGTAATGTTGGAAGCTCTTTTAAACCAGTTCAGGCTGGAGAAAA
CGATACAACTGGTGTGAAATTTGTACCTAATTATTTAGCTCATCCTGTTT
TTCCTTACGGAGCGAACCAACAACAAAGAACTGTTTATCCACCTGCGGCG
TTTCAGCCAAGTGTAACTACTGGGACAACTGCATCTCAAAGTCATGTTAT
TTCAGGTAATGATTCTGAAGATGATGAGCTTGTTTTGAGAGTTAGATATC
CAAAATCAAACGAGATGGATTTTATTGAAATCGAATTGGATATGAATGAA
TTGACATATGATAATTTAGTCAAAACATGTACAAATGAATTTAAGATTGA
TACTGCCttggaaatttgtaaaatacgAAAATTACCTAATGTTATTGTTC
GAAAAGACAAAGATATGAAAAGGTTGAAACCCTTTCAAGAGCTTGAAATA
TTTACTGGAAAAAGGAAATCTGTTGACGATTTCCAGTGATTTCTAATACT
TTTGCTGTTGTTAATTGAAGtgaatttttattgaattttggtTTAGTAGT
TTAAGGTTCTGGTAGTGGTCTCCAAAAAATGAATCAGATACTTTACTAAT
AcctaaaatggcaaaaaaagtttgaaaacttGGTAGGTAACTAGAATtgg
taatttttgattttatttttgtaagtcgactttaactttttcttaaatta
tgggtattttgatattttttttaatggtAGTTTATCGATTATTCGACAGA
GTTTTATTTTGATAGTAAACCATATTAAGATTGAGTCCTCTCCATTTGGA
ACTGAAGTAATACCCAATTTATTTGAATAAGGGAAGATTCCAatggaaat
tataaaaaaaatttctttttttagacTAAACTGCGGATTAGTTCATATTA
TAGAAAAACTCAGTCAATAGAACTTCGAATAAA

Coding sequence (CDS) from alignment at sc0000053:84189..85571

>TCONS_00005509 ID=TCONS_00005509|Name=TCONS_00005509|organism=Clytia hemisphaerica|type=CDS|length=762bp|location=Sequence derived from alignment at sc0000053:84189..85571 (Clytia hemisphaerica)
ATGAGTATGATGGAAGAATTGAACGAAAAATTACGTGAAGCATGTTGTAT
GGGTGACAATGAAAGTGTATACAGGTACTTAACACAAGGGGCCGATGTCA
ACTCAAAAAACAAGATGAACGGTTGGACCTGTTTACACTGGGCTGCTAAA
CGTGGACATACCAACTTAGTTGAGGTTCTATTGAGATCAAATGCTGATCC
CAATGTGTTGAATGATAAACAACAAACCGCACTTGAAGTCGCTGATTTAG
ATTCTGTCAAGGACATTTTGAAAGACAAAAGTAATGTTGGAAGCTCTTTT
AAACCAGTTCAGGCTGGAGAAAACGATACAACTGGTGTGAAATTTGTACC
TAATTATTTAGCTCATCCTGTTTTTCCTTACGGAGCGAACCAACAACAAA
GAACTGTTTATCCACCTGCGGCGTTTCAGCCAAGTGTAACTACTGGGACA
ACTGCATCTCAAAGTCATGTTATTTCAGGTAATGATTCTGAAGATGATGA
GCTTGTTTTGAGAGTTAGATATCCAAAATCAAACGAGATGGATTTTATTG
AAATCGAATTGGATATGAATGAATTGACATATGATAATTTAGTCAAAACA
TGTACAAATGAATTTAAGATTGATACTGCCttggaaatttgtaaaatacg
AAAATTACCTAATGTTATTGTTCGAAAAGACAAAGATATGAAAAGGTTGA
AACCCTTTCAAGAGCTTGAAATATTTACTGGAAAAAGGAAATCTGTTGAC
GATTTCCAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003127XLOC_003127Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005509-proteinTCONS_00005509-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005509-exon-sc0000053-1491911889:84189..85571TCONS_00005509-exon-sc0000053-1491911889:84189..85571Clytia hemisphaericaexon
TCONS_00005509-exon-sc0000053-1510915933:84189..85571TCONS_00005509-exon-sc0000053-1510915933:84189..85571Clytia hemisphaericaexon
TCONS_00005509-exon-sc0000053-1575043694:84189..85571TCONS_00005509-exon-sc0000053-1575043694:84189..85571Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000053supercontigsc0000053:84189..85571 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
35.5986	34.4785	57.2778	56.573	7.05022	4.66949	7.49843	6.51072	6.51915	5.83546	4.2863	3.60256	2.57255	2.23331	3.98104	4.05129	5.33114	3.95286	2.24868	2.35308	4.20739	2.86455	21.2053	19.6567	2.23873	2.17175	3.3564	3.84737	10.3978	10.0128
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR020683Ankyrin_rpt-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00005509 vs. Swiss-Prot (Human)
Match: ANR40 (Ankyrin repeat domain-containing protein 40 OS=Homo sapiens GN=ANKRD40 PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 3.710e-22
Identity = 49/138 (35.51%), Postives = 74/138 (53.62%), Query Frame = -1 
Query:  784 EELNEKLREACCMGDNESVYRYLTQGADVNSKNKMNGWTCLHWAAKRGHTNLVEVLLRSNADPNVLNDKQQTALEVADLDSVKDILKDKSNVGSSFKPVQAGE-NDTTGVKFVPNYLAHPVFPYGANQQQRTVYPPAA 1194
            +E  E+LREA  +GD   V + +  G DVNS+N++NGWTCLHWA KR H  +V  LL+S AD  +L  K +  +++     ++ I+  +             +    + + FVPNYLA+P FP+        +Y P A
Sbjct:    8 KEQQERLREAAALGDIREVQKLVESGVDVNSQNEVNGWTCLHWACKRNHGQVVSYLLKSGADKEILTTKGEMPVQLTSRREIRKIMGVEEEDDDDDDDDNLPQLKKESELPFVPNYLANPAFPF--------IYTPTA 137

HSP 2 Score: 82.4185 bits (202), Expect = 5.548e-17
Identity = 49/106 (46.23%), Postives = 61/106 (57.55%), Query Frame = -1 
Query:  484 PPAAFQPSVTTGTTASQSHVISGNDSEDDELVLRVRY--PKSNEMDFIEIELDMNELTYDNLVKTCTNEFKIDTALEICKIRKLPNVIVRKDKDMKRLKPFQELEI 795
            P  AFQP   TG                 ELVL+VR   P   E DFIEIELD  ELTY  L++ C  E  ++   ++ KIRKLPN ++RKDKD+ RL+ FQELE+
Sbjct:  241 PAPAFQPFFFTGAFPFNMQ----------ELVLKVRIQNPSLRENDFIEIELDRQELTYQELLRVCCCELGVNPD-QVEKIRKLPNTLLRKDKDVARLQDFQELEL 335
The following BLAST results are available for this feature:
BLAST of TCONS_00005509 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ANR403.710e-2235.51Ankyrin repeat domain-containing protein 40 OS=Hom... [more]
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