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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005506 ID=TCONS_00005506|Name=TCONS_00005506|organism=Clytia hemisphaerica|type=transcript|length=1398bp
acagttacttattttgtttgtaagatttttgattttgtgttttggttgac
cacttttcaatttggccccatacaccatctgaaagcttgTTTTTAgttat
catttccagctcattagcgataagctaaagtttaacagtcatcgggccga
ttttcagaccgcaccggCAAANgtgaaatttgtttttagttatcatttcc
agctcattagcgataagctaaagtttaacagtcatcgggccgattttcag
accgcaccggCAAAACTCTCCACACCCTGCCACAcgtaagactagatttc
atccgccatttttggtgcaatttttggtgcttccgaaaattatttcttgc
tggcgtggtgtaaggaggcgattctttgaaaaggtgatttttttgtgttt
tgaaaatggaataactttgggaatactcaaccaattctaataaatgaccc
ctcatttttctcacaaaggtaaggactttcaaataaaattagtttggttt
ctaaaatttgaggggaaaattttggcctgtccaccctccTACCAAATCCT
GTACCGTGGTTTTGTAAACAAGGCAAACTGTATTCAAATTACCATAGAAG
TGGATGTGTTTGAGCTTAAAAGTTTTTGTGGAGGATTTGGTTTAGCTTGT
GAGTGATATGCTGAGATCCTTCCGTGCAACATGCTATAAAATATTAGGGC
TTATTTCGGTAATATGGAGTAGATAATTTCTGGCCCAAATGGTTGGAATA
ATTTGATAAGCGGAACTGAGTCAATAGGTTGTGATGTTCTCCCAGACAAC
TATTCTTTAGAAATAGGAAAGGTTTAGACACCAGTAGCATGCATGTATTT
CCTCAATTAAAAGATGACTAACTGGTCTATTTTAATAGGTTATATTTTTT
CTAATAATCGTTTCATTAACCTGTATTATTGAAGGTAGAAAAGAATAAAC
CTACTTTATAACTTAAATACAAAAATGGGTGGAAAATTTGGAAACCTCAG
CAAGTACAAGAACGTCATCAGTTACTCACTGTCACCATTTGAACAAAGAG
CGTTTGCTGGATTCTTTTCCAAAGGTGTTGGAAATTTATACAGACGATTC
ATGAGTCAAGTCTTCTACGTACTCCCACCATTTGTTTTTGGTGCTATGGT
GATCAATCATGCTGAAAAAGAAAACCTTCGACTTTCAAGAAAGAACCCTG
AAGATTTTGCACACGAATCCTGATTTTTTAAATGAACACATTTGTTTTGC
CTGCACCGTTATACACAAATTATGACCTAAATGTATATTTCttggacttg
ttttttttaattttttcaatttatgatTGAATTTGTTAAATAAAAGTGCC
ACTAAAAAACTAtgacttttttattctgcttttCAATAATTTAACTAG Run BLAST on NCBI transcript from alignment at sc0000053:26696..28093 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005506 ID=TCONS_00005506|Name=TCONS_00005506|organism=Clytia hemisphaerica|type=transcript|length=1398bp|location=Sequence derived from alignment at sc0000053:26696..28093 (Clytia hemisphaerica)
CTAGTTAAATTATTGaaaagcagaataaaaaagtcaTAGTTTTTTAGTGG
CACTTTTATTTAACAAATTCAatcataaattgaaaaaattaaaaaaaaca
agtccaaGAAATATACATTTAGGTCATAATTTGTGTATAACGGTGCAGGC
AAAACAAATGTGTTCATTTAAAAAATCAGGATTCGTGTGCAAAATCTTCA
GGGTTCTTTCTTGAAAGTCGAAGGTTTTCTTTTTCAGCATGATTGATCAC
CATAGCACCAAAAACAAATGGTGGGAGTACGTAGAAGACTTGACTCATGA
ATCGTCTGTATAAATTTCCAACACCTTTGGAAAAGAATCCAGCAAACGCT
CTTTGTTCAAATGGTGACAGTGAGTAACTGATGACGTTCTTGTACTTGCT
GAGGTTTCCAAATTTTCCACCCATTTTTGTATTTAAGTTATAAAGTAGGT
TTATTCTTTTCTACCTTCAATAATACAGGTTAATGAAACGATTATTAGAA
AAAATATAACCTATTAAAATAGACCAGTTAGTCATCTTTTAATTGAGGAA
ATACATGCATGCTACTGGTGTCTAAACCTTTCCTATTTCTAAAGAATAGT
TGTCTGGGAGAACATCACAACCTATTGACTCAGTTCCGCTTATCAAATTA
TTCCAACCATTTGGGCCAGAAATTATCTACTCCATATTACCGAAATAAGC
CCTAATATTTTATAGCATGTTGCACGGAAGGATCTCAGCATATCACTCAC
AAGCTAAACCAAATCCTCCACAAAAACTTTTAAGCTCAAACACATCCACT
TCTATGGTAATTTGAATACAGTTTGCCTTGTTTACAAAACCACGGTACAG
GATTTGGTAggagggtggacaggccaaaattttcccctcaaattttagaa
accaaactaattttatttgaaagtccttacctttgtgagaaaaatgaggg
gtcatttattagaattggttgagtattcccaaagttattccattttcaaa
acacaaaaaaatcaccttttcaaagaatcgcctccttacaccacgccagc
aagaaataattttcggaagcaccaaaaattgcaccaaaaatggcggatga
aatctagtcttacgTGTGGCAGGGTGTGGAGAGTTTTGccggtgcggtct
gaaaatcggcccgatgactgttaaactttagcttatcgctaatgagctgg
aaatgataactaaaaacaaatttcacNTTTGccggtgcggtctgaaaatc
ggcccgatgactgttaaactttagcttatcgctaatgagctggaaatgat
aacTAAAAAcaagctttcagatggtgtatggggccaaattgaaaagtggt
caaccaaaacacaaaatcaaaaatcttacaaacaaaataagtaactgt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005506-exon-sc0000053-1491911889:26696..28093 | TCONS_00005506-exon-sc0000053-1491911889:26696..28093 | Clytia hemisphaerica | exon |
| TCONS_00005506-exon-sc0000053-1510915933:26696..28093 | TCONS_00005506-exon-sc0000053-1510915933:26696..28093 | Clytia hemisphaerica | exon |
| TCONS_00005506-exon-sc0000053-1575043694:26696..28093 | TCONS_00005506-exon-sc0000053-1575043694:26696..28093 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000053 | supercontig | sc0000053:26696..28093 . |
Blast
BLAST of TCONS_00005506 vs. Swiss-Prot (Human)
Match: QCR8 (Cytochrome b-c1 complex subunit 8 OS=Homo sapiens GN=UQCRQ PE=1 SV=4) HSP 1 Score: 73.9442 bits (180), Expect = 8.809e-16 Identity = 36/81 (44.44%), Postives = 52/81 (64.20%), Query Frame = 3
Query: 975 MGGKFGNLSKYKNVISYSLSPFEQRAFAGFFSKGVGNLYRRFMSQVFYVLPPFVFGAMVINHAEKENLRLSRKNPEDFAHE 1217
MG +FGNL++ ++VISYSLSPFEQRA+ F+KG+ N+ RR F V+P FV ++ +E R RKNP + ++
Sbjct: 1 MGREFGNLTRMRHVISYSLSPFEQRAYPHVFTKGIPNVLRRIRESFFRVVPQFVVFYLIYTWGTEEFERSKRKNPAAYEND 81
The following BLAST results are available for this feature:
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