TCONS_00005505 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005505
Unique NameTCONS_00005505
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length581

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005505 ID=TCONS_00005505|Name=TCONS_00005505|organism=Clytia hemisphaerica|type=transcript|length=581bp
AACACCCATCAAGACTTTTCTCCATAGATTTTGTCATGGTCCAGGTTTCA
GAACCATAAAGAAGAATGGGCTCCACAAGACACTTGAAAGTTTTCAGCTT
GAGGTTATTGTCAAGATCACATTGCCAGATTTTGTTGAGCTTATTTCAAG
CTTTCCACGCAAGTGCTTTCCTGGTTTTAAAGTCGCTATCAGAACTGTTG
ATAAGAGAGCCTAAGTAGTTGAAATCGATTACTTTTTTTAATGTCAACac
ctttcaaagaaaataaagggAGAAAATTTTCAGAGGAGCAAAGATATTCT
GTTTTTTTCTCGTTACAGTAAAGACCGACCTGACTTGCTGCAGTTTCTAA
AGAATGGAGTAGAATTTCGAGATTTTGAATACTTTCTGCAACAAGTGCGA
GGTCATCAGCAAAATCCAGATCAGTCACAAACAAGCCAGGGTCACGTGTG
CCCTTGGGCGTTTTAATTTGAATtccttttttgttaaaagtatcaacaga
aattcttaaaacataatccaaaacaactataaaaagaaaaggagCAAGAG
TGTCTCCTTGAAGAACTCCTGCTTGAATANN
Run BLAST on NCBI

protein sequence of TCONS_00005505-protein

>TCONS_00005505-protein ID=TCONS_00005505-protein|Name=TCONS_00005505-protein|organism=Clytia hemisphaerica|type=polypeptide|length=130bp
XIQAGVLQGDTLAPFLFIVVLDYVLRISVDTFNKKGIQIKTPKGTRDPGL
FVTDLDFADDLALVAESIQNLEILLHSLETAASQVGLYCNEKKTEYLCSS
ENFLPLFSLKGVDIKKSNRFQLLRLSYQQF
Run BLAST on NCBI

transcript from alignment at sc0000053:9130..9710

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005505 ID=TCONS_00005505|Name=TCONS_00005505|organism=Clytia hemisphaerica|type=transcript|length=581bp|location=Sequence derived from alignment at sc0000053:9130..9710 (Clytia hemisphaerica)
NNTATTCAAGCAGGAGTTCTTCAAGGAGACACTCTTGctccttttctttt
tatagttgttttggattatgttttaagaatttctgttgatacttttaaca
aaaaaggaATTCAAATTAAAACGCCCAAGGGCACACGTGACCCTGGCTTG
TTTGTGACTGATCTGGATTTTGCTGATGACCTCGCACTTGTTGCAGAAAG
TATTCAAAATCTCGAAATTCTACTCCATTCTTTAGAAACTGCAGCAAGTC
AGGTCGGTCTTTACTGTAACGAGAAAAAAACAGAATATCTTTGCTCCTCT
GAAAATTTTCTccctttattttctttgaaaggtGTTGACATTAAAAAAAG
TAATCGATTTCAACTACTTAGGCTCTCTTATCAACAGTTCTGATAGCGAC
TTTAAAACCAGGAAAGCACTTGCGTGGAAAGCTTGAAATAAGCTCAACAA
AATCTGGCAATGTGATCTTGACAATAACCTCAAGCTGAAAACTTTCAAGT
GTCTTGTGGAGCCCATTCTTCTTTATGGTTCTGAAACCTGGACCATGACA
AAATCTATGGAGAAAAGTCTTGATGGGTGTT

Coding sequence (CDS) from alignment at sc0000053:9130..9710

>TCONS_00005505 ID=TCONS_00005505|Name=TCONS_00005505|organism=Clytia hemisphaerica|type=CDS|length=393bp|location=Sequence derived from alignment at sc0000053:9130..9710 (Clytia hemisphaerica)
NNTATTCAAGCAGGAGTTCTTCAAGGAGACACTCTTGctccttttctttt
tatagttgttttggattatgttttaagaatttctgttgatacttttaaca
aaaaaggaATTCAAATTAAAACGCCCAAGGGCACACGTGACCCTGGCTTG
TTTGTGACTGATCTGGATTTTGCTGATGACCTCGCACTTGTTGCAGAAAG
TATTCAAAATCTCGAAATTCTACTCCATTCTTTAGAAACTGCAGCAAGTC
AGGTCGGTCTTTACTGTAACGAGAAAAAAACAGAATATCTTTGCTCCTCT
GAAAATTTTCTccctttattttctttgaaaggtGTTGACATTAAAAAAAG
TAATCGATTTCAACTACTTAGGCTCTCTTATCAACAGTTCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003123XLOC_003123Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005505-exon-sc0000053-1491911889:9130..9710TCONS_00005505-exon-sc0000053-1491911889:9130..9710Clytia hemisphaericaexon
TCONS_00005505-exon-sc0000053-1510915933:9130..9710TCONS_00005505-exon-sc0000053-1510915933:9130..9710Clytia hemisphaericaexon
TCONS_00005505-exon-sc0000053-1575043694:9130..9710TCONS_00005505-exon-sc0000053-1575043694:9130..9710Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005505-proteinTCONS_00005505-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000053supercontigsc0000053:9130..9710 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.93524	1.09388	3.52209	4.64486	4.5707	2.27634	1.71659	2.64015	1.79096	2.50574	1.22465	1.5802	1.71568	2.93444	0.48739	0.319527	0.143188	0.70513	0.304142	0.902315	1.07421	1.44579	0.146468	0.571039	3.31974	5.55704	0.727466	0.522467	1.0983	0.3912
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005505 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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