TCONS_00005503 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005503
Unique NameTCONS_00005503
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length983

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005503 ID=TCONS_00005503|Name=TCONS_00005503|organism=Clytia hemisphaerica|type=transcript|length=983bp
CTAAGAGAGGTTAATAGATTGgaatttctaaatgaaattgCTTTTAAAAT
TCATAAAGCTAACCCAAAAAGCCTCGATTCTCCCTTGATATGCTAGTTAG
CCTGGAtataaaatcaactttaaaCAAAAGGCTACTCTAAAATCTTATAT
ACATGCTATTTACAATCCgagaatttcaaaataaaaataatggtTCTGCT
GTCTCCAAATTAtcccaaaaaataaagaaaaggtCTGAAACTTTACTatg
cagttgacgctctctaattcgaggttctactattcgataagctccatTAT
TCGGTAATATTGAAGGCCACCATCAAAAATAAACTCTCATAAgcgacgct
ctactatttgttacgcccttattcgatgaaaatccaattcccatTTACTT
GAGAATCAAATGAAAAAGCGTCAACTGTGATCCTGGCTAAAGTTCTTTGT
CTCTATCTATTTGTTGGCTCCTCAATTTCAAGTATtattttcaaccaata
gaaattctTCATTGTGTTTTGAATTAGAACAGAACCATACATGGGTAAAC
ATGGACAAGATCTCAGTCGTTGTATCGTAGCTATCGTCAACGGACGCATC
TTATCTACTGACCAATGGCAAAAAACTCTCCGCAACACTGCCACAGTAGA
TTAAGTACGAAATTTTTCCttcaacataaaaaaataatgttgtttttatt
ttccaatgGTATCGTACACGCTAAGATCAAACCCGTCATTGATTTGACCG
CTAGCTGATCGGGTTGATTCCGAAGGATACGGTATTTCCGGTCTTTTCTT
TGATTGATCAATTTGCGGTAATTGAGTAGCGGTGCGTGTTGCCGTGCCTC
GTAGTCCCCGTTCGTTCATATCGTATACGTGATTAGCGCCATTCGATCGC
GCTCCGTTGCGACCGTCACCGTATTCCGTACGCATTTTCATCTTATCAAT
ATCGCTACGTAGGTTCAAGCTACGTACACGTCT
Run BLAST on NCBI

transcript from alignment at sc0000053:766386..767908-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005503 ID=TCONS_00005503|Name=TCONS_00005503|organism=Clytia hemisphaerica|type=transcript|length=1523bp|location=Sequence derived from alignment at sc0000053:766386..767908- (Clytia hemisphaerica)
CTAAGAGAGGTTAATAGATTGGAATTTCTAAATGAAATTGCTTTTAAAAT
TCATAAAGCTAACCCAAAAAGCCTCGATTCTCCCTTGATATGCTAGTTAG
CCTGGATATAAAATCAACTTTAAACAAAAGGCTACTCTAAAATCTTATAT
ACATGCTATTTACAATCCGAGAATTTCAAAATAAAAATAATGGTTCTGCT
GTCTCCAAATTATCCCAAAAAATAAAGAAAAGGTCTGAAACTTTACTATG
CAGTTGACGCTCTCTAATTCGAGGTTCTACTATTCGATAAGCTCCATTAT
TCGGTAATATTGAAGGCCACCATCAAAAATAAACTCTCATAAGCGACGCT
CTACTATTTGTTACGCCCTTATTCGATGAAAATCCAATTCCCATTTACTT
GAGAATCAAATGAAAAAGCGTCAACTGTGATCCTGGCTAAAGTTCTTTGT
CTCTATCTATTTGTTGGCTCCTCAATTTCAAGTATTATTTTCAACCAATA
GAAATTCTTCATTGTGTTTTGAATTAGAACAGAACCATACATGGGTAAAC
ATGGACAAGATCTCAGTCGTTGTATCGTAGCTATCGTCAACGGACGCATC
TTATCTACTGACCAATGGCAAAAAACTCTCCGCAACACTGCCACAGTAGA
TTAAGTACGAAATTTTTCCTTCAACATAAAAAATAATGTTGTTTTTATTT
TCCAATGGTATCGTACACGCTAAGATCAAATCCGTCATTGATTTGACCGC
TAGCTGATCGGGTTGATTCCGAAGGATACGGTATTTCCGGTCTTTTCTTT
GATTGATCAATTTGCGGTAATTGAGTAGCGGTGCGTGTTGCCGTGCCTCG
TAGTCCCCGTTCGTTCATATCGTATACGTGATTCGCACCGTTCGATCGCG
CTCCGTTGCGACCGTCACCGTATTCCGTACGCATTTTCATCTTATCAATA
TCGCTACGTAGGTTCAAGCTNTCTTTTTGTTTATCGAAATTAATTGAATT
AGCAAACAAAACTCTCAAGATAACAAAAGACGACAAACTGTCAATCAAAG
TTCTCTATCATTCAACTCTTTTTATGGTTAGCAGATTTTTTGCTAAGTTC
GGAACGGTTTTGTGAGCCTGATTCGCATCCCCTATATCAAAACTTATCAG
AGGGGATGTGTGCAGCCTACCGCAACACTGCCACAGTAGATTAAGTACGA
GATTTTTCCTTCAACATAAAAAAATAATGTTGTTTTTATTTTCCAATGGT
ATCGTACACGCTAAGATCAAACCCGTCATTGATTTGACCGCTAGCTGATC
GGGTTGATTCCGAAGGATACGGTATTTCCGGTCTTTTCTTTGATTGATCA
ATTTGCGGTAATTGAGTAGCGGTGCGTGTTGCCGTGCCTCGTAGTCCCCG
TTCGTTCATATCGTATACGTGATTAGCGCCATTCGATCGCGCTCCGTTGC
GACCGTCACCGTATTCCGTACGCATTTTCATCTTATCAATATCGCTACGT
AGGTTCAAGCTACGTACACGTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003121XLOC_003121Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005503-exon-sc0000053-1575043694:767234..767908TCONS_00005503-exon-sc0000053-1575043694:767234..767908Clytia hemisphaericaexon
TCONS_00005503-exon-sc0000053-1575043694:766386..766693TCONS_00005503-exon-sc0000053-1575043694:766386..766693Clytia hemisphaericaexon
TCONS_00005503-exon-sc0000053-1510915933:767234..767908TCONS_00005503-exon-sc0000053-1510915933:767234..767908Clytia hemisphaericaexon
TCONS_00005503-exon-sc0000053-1510915933:766386..766693TCONS_00005503-exon-sc0000053-1510915933:766386..766693Clytia hemisphaericaexon
TCONS_00005503-exon-sc0000053-1491911889:767234..767908TCONS_00005503-exon-sc0000053-1491911889:767234..767908Clytia hemisphaericaexon
TCONS_00005503-exon-sc0000053-1491911889:766386..766693TCONS_00005503-exon-sc0000053-1491911889:766386..766693Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000053supercontigsc0000053:766386..767908 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0150952	0.0436418	0.998186	0.226392	0	0.331243	0	0.16112	0.171321	0	1.2037	2.34648	0.340374	0.424522	0.62179	0.572525	4.17506	3.68723	2.42585	2.0237	0.3065	0.834083	1.22466	1.28547	0.455275	0.201996	0	0.237248
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005503 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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