TCONS_00005502 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005502
Unique NameTCONS_00005502
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length498

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005502 ID=TCONS_00005502|Name=TCONS_00005502|organism=Clytia hemisphaerica|type=transcript|length=498bp
CAAAAGTCGGGAATCGCCGCCGCTAGTTGTCAAGATGGGAAATATGGGTG
TTTCAAGATTTTACTCTTACTTGCTCTTGTAGGTAGGTATGTCTATGTTT
TTCTTTAATTGTCTCATTTGACCTGAGTtttttttctgtgaaatatctgT
GATTGGATATCAGCATTCATAtatattatgatttttgtttataaacAATA
AAAAGGAAAGTTTTCAACAAATATATTGTGTACCATTTCCAGAATGGTAG
GTTTAGGTTGTCACACACAAAATTAGTTAACCCCCTCCTCAAGACAGAGA
GTTATTACATTCAGGTAGCCCATGATTGTACCTCTGATAGACCCGATACC
GATAGTCTCTGATCTCAAGTAAGACACAAAGTATCCTCAAAATGCACCAG
AGGTGATATATATGGCTGGTGAGTGTCCTGGGCTTTTTCTGACAGTCTAG
ACAGTGTGCgagaagtttatattgaaatctgcaacaaaaatgaaagtg
Run BLAST on NCBI

transcript from alignment at sc0000053:716011..716508-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005502 ID=TCONS_00005502|Name=TCONS_00005502|organism=Clytia hemisphaerica|type=transcript|length=498bp|location=Sequence derived from alignment at sc0000053:716011..716508- (Clytia hemisphaerica)
CAAAAGTCGGGAATCGCCGCCGCTAGTTGTCAAGATGGGAAATATGGGTG
TTTCAAGATTTTACTCTTACTTGCTCTTGTAGGTAGGTATGTCTATGTTT
TTCTTTAATTGTCTCATTTGACCTGAGTTTTTTTTCTGTGAAATATCTGT
GATTGGATATCAGCATTCATATATATTATGATTTTTGTTTATAAACAATA
AAAAGGAAAGTTTTCAACAAATATATTGTGTACCATTTCCAGAATGGTAG
GTTTAGGTTGTCACACACAAAATTAGTTAACCCCCTCCTCAAGACAGAGA
GTTATTACATTCAGGTAGCCCATGATTGTACCTCTGATAGACCCGATACC
GATAGTCTCTGATCTCAAGTAAGACACAAAGTATCCTCAAAATGCACCAG
AGGTGATATATATGGCTGGTGAGTGTCCTGGGCTTTTTCTGACAGTCTAG
ACAGTGTGCGAGAAGTTTATATTGAAATCTGCAACAAAAATGAAAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003120XLOC_003120Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005502-exon-sc0000053-1575043694:716011..716508TCONS_00005502-exon-sc0000053-1575043694:716011..716508Clytia hemisphaericaexon
TCONS_00005502-exon-sc0000053-1510915933:716011..716508TCONS_00005502-exon-sc0000053-1510915933:716011..716508Clytia hemisphaericaexon
TCONS_00005502-exon-sc0000053-1491911889:716011..716508TCONS_00005502-exon-sc0000053-1491911889:716011..716508Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000053supercontigsc0000053:716011..716508 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	2.14481	1.11038	0.662197	0	0	0.147756	0.517239	1.28137	0	0.327031	0.816441	0.678305	0.27883	0.450967	0.0921557	0	0.260994	0.682778	0.482284	0.176038	0.140755	0.258675	0	0.470522	2.26775	2.7719	1.54829	1.72613
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005502 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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