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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005489 ID=TCONS_00005489|Name=TCONS_00005489|organism=Clytia hemisphaerica|type=transcript|length=559bp
ATGGTCAAATTCACTAAACTCGGTTGCTATAACGACGACCAAAACAACCC
CAGACCGTTACCAAAAGAGATTTTGAATGACATTAGTTCCCAGTTCCCAG
GATTCAGCGGTAAACAAGCAGACTGGGGAGAATGGGATGATTATTATAAA
GATTTTGTTTGTCGTTGTGCAAAGGAAACAATAAAACATGGCTACAAAGT
TTTTGGAGTACAGAATTTTGCCTCCTGTTTCTCTGGCCCTAAAGGAAAGA
CGACGTATTTTGAAGACGGAAAAGCCGAAGACCATAAATGCGTTGCCGAT
AGTTTCAAGAAGTGTGACGTCACTGATTCAATATGTGTGGGAAAGAAAGG
CACTAACTTTGTCTACACCATTAATGATATGACAAAAAGAAACAAAATTG
AAGGTGAACATAGAATGGATTAACgacaagaaaaaatttgatcataattg
taatattttgtaaatagtttttgcgtttataaaatcaaaaataaatttta
aatctaaCATTTTACAATAGTTTATTTAGTAGTAGTTAGATTTAAACCTT
TCTGTATTC Run BLAST on NCBI protein sequence of TCONS_00005489-protein >TCONS_00005489-protein ID=TCONS_00005489-protein|Name=TCONS_00005489-protein|organism=Clytia hemisphaerica|type=polypeptide|length=140bp
MVKFTKLGCYNDDQNNPRPLPKEILNDISSQFPGFSGKQADWGEWDDYYK
DFVCRCAKETIKHGYKVFGVQNFASCFSGPKGKTTYFEDGKAEDHKCVAD
SFKKCDVTDSICVGKKGTNFVYTINDMTKRNKIEGEHRMD Run BLAST on NCBI transcript from alignment at sc0000053:558418..560040- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005489 ID=TCONS_00005489|Name=TCONS_00005489|organism=Clytia hemisphaerica|type=transcript|length=1623bp|location=Sequence derived from alignment at sc0000053:558418..560040- (Clytia hemisphaerica)
ATGGTCAAATTCACTAAACTCGGTTGCTATAACGACGACCAAAACAACCC
CAGACCGTTACCAAAAGAGATTTTGAATGACATTAGTTCCCAGTTCCCAG
GATTCAGCGGTAAACAAGCAGACTGGGGAGAATGGGATGATTATTATAAA
GATTTTGTTTGTCGTTGTGCAAAGGAAACAATAAAACATGGCTACAAAGT
TTTTGGAGTACAGAATTTTGGTAAGTTCAACCCTATTCCTACAGAGTTTG
AATTGCTCTGATTTTATAGCGTACTGGAGTCGCACGAACACTGAAATTTC
GACGCATTTTTCTTAAATCACCATCAAATATCAAAAGCAAAAATCTATAA
AATTCAAATTACTTTGCCACTTATGTTTGACACCGAAATACCGTCACTTT
TTTCAGTGTTGTACTAGCATGGCTTGTGCGAGACTTTTTTTACCCATATA
GTGGTGGTTATACAAGAGCCTAAGGCCCGGCGTCTGAACCAGGGATAGTT
TTCCTTCTATCTCAGTTTAAAGAGCATCGCTGGTCGTTGCGGAAGCAAAA
TATGCCTTTTTACCGCAAAGTTCAGAAAAAATAAAAAACTATGATATTCG
TTTTAGCCTCCTGTTTCTCTGGCCCTAAAGGAAAGACGACGTATTTTGAA
GACGGAAAAGCCGAAGACCATAAATGCGTTGCCGATAGTTTCAAGAAGTG
TGACGTCACTGATTCAATATGTGTGGGAAAGAAAGGCACTAACTTTGTCT
ACACCATTAATGATATGACAAAAAGGTATGGTGGCCGAGTGTTAGAATAC
CCCCTTCTCATAGGATTTTTTCAGTCAGTTGGGGACAAAAATAACGGTCT
GAAACTCAATGGAGATTGATTTTTCATGACTGAGGATTTCAATTCTTTTG
TTTTCAAGTCAGAAAATCCAGTGAAGATGGGAAAATAGCATAACATTTTG
CAGTGAGGATTATTTCATTTGATTATTTTCAGTGGGGACAAAAATTGAAG
GATAATTTTCCACCGGGAACGATATTTTGGAGAATTTACCAGTGGGAAGG
GGTACCAGTTGGTCTGTAAGAAGGGGTTGTGTAAGAGTTTTAACTTTTAT
CCAAGAAATACACAAAGAACTTGAGTATAATTTTGCAAATAGCGGTGTAC
AAATATTTCAGAAAGTATCATATCTTGCTTGTTTATCTAACGTCCACAAC
GTCCATATAACGTTAGATGAACGTTGAAACATGCTGGGTACAGTATCTTG
ATTATCTAACCAGTAGAAAGTTCTTCATTTTTTATTCTTCGATTCCCGAT
TCCATGTTTTAAATATTTAACCTCGATGATATCTTTCCAACGGCATAAAT
GGGTGTGGAAAATTGTTAATGAAATAAAGAAGTGCCCAAATACTTTGTGA
CAGACTCTAAATACATTTGTTTTTATGTCAGATTCTTTACTTTTGTTTTA
TAGAAACAAAATTGAAGGTGAACATAGAATGGATTAACGACAAGAAAAAA
TTTGATCATAATTGTAATATTTTGTAAATAGTTTTTGCGTTTATAAAATC
AAAAATAAATTTTAAATCTAACATTTTACAATAGTTTATTTAGTAGTAGT
TAGATTTAAACCTTTCTGTATTC Coding sequence (CDS) from alignment at sc0000053:558418..560040- >TCONS_00005489 ID=TCONS_00005489|Name=TCONS_00005489|organism=Clytia hemisphaerica|type=CDS|length=1269bp|location=Sequence derived from alignment at sc0000053:558418..560040- (Clytia hemisphaerica)
AAACAAAATTGAAGGTGAACATAGAATGGATTAACCTCCTGTTTCTCTGG
CCCTAAAGGAAAGACGACGTATTTTGAAGACGGAAAAGCCGAAGACCATA
AATGCGTTGCCGATAGTTTCAAGAAGTGTGACGTCACTGATTCAATATGT
GTGGGAAAGAAAGGCACTAACTTTGTCTACACCATTAATGATATGACAAA
AAGATGGTCAAATTCACTAAACTCGGTTGCTATAACGACGACCAAAACAA
CCCCAGACCGTTACCAAAAGAGATTTTGAATGACATTAGTTCCCAGTTCC
CAGGATTCAGCGGTAAACAAGCAGACTGGGGAGAATGGGATGATTATTAT
AAAGATTTTGTTTGTCGTTGTGCAAAGGAAACAATAAAACATGGCTACAA
AGTTTTTGGAGTACAGAATTTTGAAACAAAATTGAAGGTGAACATAGAAT
GGATTAACCTCCTGTTTCTCTGGCCCTAAAGGAAAGACGACGTATTTTGA
AGACGGAAAAGCCGAAGACCATAAATGCGTTGCCGATAGTTTCAAGAAGT
GTGACGTCACTGATTCAATATGTGTGGGAAAGAAAGGCACTAACTTTGTC
TACACCATTAATGATATGACAAAAAGATGGTCAAATTCACTAAACTCGGT
TGCTATAACGACGACCAAAACAACCCCAGACCGTTACCAAAAGAGATTTT
GAATGACATTAGTTCCCAGTTCCCAGGATTCAGCGGTAAACAAGCAGACT
GGGGAGAATGGGATGATTATTATAAAGATTTTGTTTGTCGTTGTGCAAAG
GAAACAATAAAACATGGCTACAAAGTTTTTGGAGTACAGAATTTTGAAAC
AAAATTGAAGGTGAACATAGAATGGATTAACCTCCTGTTTCTCTGGCCCT
AAAGGAAAGACGACGTATTTTGAAGACGGAAAAGCCGAAGACCATAAATG
CGTTGCCGATAGTTTCAAGAAGTGTGACGTCACTGATTCAATATGTGTGG
GAAAGAAAGGCACTAACTTTGTCTACACCATTAATGATATGACAAAAAGA
TGGTCAAATTCACTAAACTCGGTTGCTATAACGACGACCAAAACAACCCC
AGACCGTTACCAAAAGAGATTTTGAATGACATTAGTTCCCAGTTCCCAGG
ATTCAGCGGTAAACAAGCAGACTGGGGAGAATGGGATGATTATTATAAAG
ATTTTGTTTGTCGTTGTGCAAAGGAAACAATAAAACATGGCTACAAAGTT
TTTGGAGTACAGAATTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005489-exon-sc0000053-1575043694:559821..560040 | TCONS_00005489-exon-sc0000053-1575043694:559821..560040 | Clytia hemisphaerica | exon |
| TCONS_00005489-exon-sc0000053-1575043694:559266..559434 | TCONS_00005489-exon-sc0000053-1575043694:559266..559434 | Clytia hemisphaerica | exon |
| TCONS_00005489-exon-sc0000053-1575043694:558418..558587 | TCONS_00005489-exon-sc0000053-1575043694:558418..558587 | Clytia hemisphaerica | exon |
| TCONS_00005489-exon-sc0000053-1510915933:559821..560040 | TCONS_00005489-exon-sc0000053-1510915933:559821..560040 | Clytia hemisphaerica | exon |
| TCONS_00005489-exon-sc0000053-1510915933:559266..559434 | TCONS_00005489-exon-sc0000053-1510915933:559266..559434 | Clytia hemisphaerica | exon |
| TCONS_00005489-exon-sc0000053-1510915933:558418..558587 | TCONS_00005489-exon-sc0000053-1510915933:558418..558587 | Clytia hemisphaerica | exon |
| TCONS_00005489-exon-sc0000053-1491911889:559821..560040 | TCONS_00005489-exon-sc0000053-1491911889:559821..560040 | Clytia hemisphaerica | exon |
| TCONS_00005489-exon-sc0000053-1491911889:559266..559434 | TCONS_00005489-exon-sc0000053-1491911889:559266..559434 | Clytia hemisphaerica | exon |
| TCONS_00005489-exon-sc0000053-1491911889:558418..558587 | TCONS_00005489-exon-sc0000053-1491911889:558418..558587 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000053 | supercontig | sc0000053:558418..560040 - |
Blast
The following BLAST results are available for this feature:
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