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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005487 ID=TCONS_00005487|Name=TCONS_00005487|organism=Clytia hemisphaerica|type=transcript|length=924bp
TCGGAAACCAGTGAAAAAGAAGTCactgaagaagaagaagctCCACTGAA
TGAGAAGAAAGCATGTGAaataaaattcaagaaaattggATGCTACAAGT
CAAAAAATAAAGCAAGAGGATTTAAAACATTCTTACAAGCTGATCAAGAA
GCTGACTCATTCGCCAAGAAAGGAAAAGTTGCCAACAAAGAAACATTCAA
TAAACGACTACCAAATATGGTCTGTGAATGTGCAAAAGCTGCCTTGAACT
CTGGAAATGCTatcttttcattgaaaaatattgCTGAATGCTGGACCGGA
CCTGATAGCACCATTTACGACGCCGAAGGGCCATCAGACAAGTGCGTCAC
ATTTGGTAGTGAAAAATGTGACGAGAATTCCGAATTATGTTCTGGCAAGA
AACATTCAAACTTTGTGTATTTTGTTGATTCCCCTGACCATACTAAGAGT
GctgaagaaatcaaaaaagagCTTGCGGCGGAAAATAAGAAGAAGGCTAA
ACAAGCTGCAAAGGAAGCTAAGAAGGCTGAAAAATCTGCgaacaaaaaca
agaagaaacACAAGAAATCTAAGAAAGGAAAAGGCAAAAAGAAACACGAA
TAAATGACGGCAAATTGGGGAAAGATTATCATCTACGTTGGTGAAAGCTT
TTGGTAGTTCCAAAAACATCGACTTTCatcaaagaaaatcttttaaaatt
tattattttttagaaaatatttttttagaatttttaaaatctAATTATAT
TATCGTATATACTTTAACGGAACAGATGAATCCAGTGAACTTAATTATGT
AATGTCTCACTTTCTTAGTTTAGCAAAATCGTTACCCCCTAAGTCcactt
attttcaaaattgtattgTGAACTTGATGACTAGGGATTAGTTAGGAAAA
TAGTTATTGGACTGATTTGACTAT Run BLAST on NCBI protein sequence of TCONS_00005487-protein >TCONS_00005487-protein ID=TCONS_00005487-protein|Name=TCONS_00005487-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
SETSEKEVTEEEEAPLNEKKACEIKFKKIGCYKSKNKARGFKTFLQADQE
ADSFAKKGKVANKETFNKRLPNMVCECAKAALNSGNAIFSLKNIAECWTG
PDSTIYDAEGPSDKCVTFGSEKCDENSELCSGKKHSNFVYFVDSPDHTKS
AEEIKKELAAENKKKAKQAAKEAKKAEKSANKNKKKHKKSKKGKGKKKHE Run BLAST on NCBI transcript from alignment at sc0000053:509156..513226- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005487 ID=TCONS_00005487|Name=TCONS_00005487|organism=Clytia hemisphaerica|type=transcript|length=4071bp|location=Sequence derived from alignment at sc0000053:509156..513226- (Clytia hemisphaerica)
TCGGAAACCAGTGAAAAAGAAGTCACTGAAGAAGAAGAAGCTCCACTGAA
TGAGAAGAAAGGTATGACTAGTATAAAAAAAAGATTTAAAGAATAAAAAT
TAAATGATAAAATAAAAAAAAAAGATGATAAAAAAAAATTAAAAAAAAAT
CTTTAGTTAGTTAGCCTTTTCAAATTTTTGAATTTTATAAAGATTTTTTT
AAATTCAAAACTTCCAACTGGCATTAAAGCCTTGTCCTTTAGGGTCAGAC
GCTTTAATACAATTTCCAACAAACCTCTTTAAAGAATGTCCTTCACTAAG
GCCTATAGTTTGGTTCCTGGGAATTTGACCCTCTTTGAAGTTGAAGGGTT
AACCATCAGACTGTTTTCTTGCTAAGCTTTTGTCGCTCAGGATTGAGGGA
AGCACAGAAAAAAAAATCATTGTGACATGCTGTCTTCACGTAAACAAGTC
ACTAGATGACATAAGAAGACGAACCTTCTCCTAATTCGAAAGTACTAACT
TACAGATAGTCAATTGTTTTAGATTTCTGAATATTTTTAATCAAAATCAC
ATTTCTTATGATTTACAGCATGTGAAATAAAATTCAAGAAAATTGGATGC
TACAAGTCAAAAAATAAAGCAAGAGGATTTAAAACATTCTTACAAGCTGA
TCAAGAAGCTGACTCATTCGCCAAGAAAGGAAAAGTTGCCAACAAAGAAA
CATTCAATAAACGACTACCAAATATGGTCTGTGAATGTGCAAAAGCTGCC
TTGAACTCTGGAAATGCTATCTTTTCATTGAAAAATATTGGTAAATGTTT
TTTTCGAATTTTCGCATGAAATTAAAAGTTTCAGGTTTTAATTTTCCTTT
ACATAATAGGGGGGTCTAATAAATAAAGCTGATAAAAATTCAAACAATTT
GACACAAATGGGTAAGTTTTAATAAAATTCAGGGAAAGAATATAAATTCC
AAAACTTTCCAATTGCAACTGAAACCCATTTGATATTTATGTCAAATGAC
TATGGAGTTTATTTTCTTTTTTTCTATTTCTCTTTTCTTTTACTTTAACT
TTTATCATATTTCCGATACTTTCCTGACTAGAAGATTCTTATACCAGCCC
CTTCCCGAGTATAAAACCAATCGACCCTCCACTTCTCTCAGTTACACGTT
AAGAACATTTTGAGGTTTTCTGGACTCTAAAACACCAAATCTTATATAGA
ATTGCACACAAGTACTCCCAAAATAGTGAAATTAAGAACATTATAGGAAC
ATTTTTAGGATTCGAACTCAAAAACTTAAGAACATCTGAGGTTTCTAAAT
ATTTTAGATGTTGTTATAAAGAAAGCGTATTTTAGATTCAAATTAGGTCC
CCGAGAATAAAAACAATACAAAACCTACACAGTTTTAATGAATAATAATT
TTGATACCATTTTGTTTTTAGCTGAATGCTGGACCGGACCTGATAGCACC
ATTTACGACGCCGAAGGGCCATCAGACAAGTGCGTCACATTTGGTAGTGA
AAAATGTGACGAGAATTCCGAATTATGTTCTGGCAAGAAACATTCAAACT
TTGTGTATTTTGTTGATTCCCCTGACCATACTAAGAGTGCTGAAGAAATC
AAAAAAGAGCTTGCGGCGGAAAATAAGAAGAAGGCTAAACAAGCTGCAAA
GGAAGCTAAGAAGGCTGAAAAATCTGCGAACAAAAACAAGAAGAAACACA
AGAAATCTAAGAAAGGAAAAGGTAATTGTTCAATTTTGAAACTAATTTTT
TGAATTTTTTGCAGTGCGGAACTCAAAAACGAAAAATGGCCGGTATTCNA
CAATTTTGAAACTAATAACTTTTTGAATTTTTTGCAGTGCGGAACTCGGT
ATTTGACGAAAAATGGCCGGTATTCTGGTACTCTTTGAACATTTTTAACC
GGTATTAGAGAAATTTGGCCGGTAAGCCGGTATTTCATGAAAAAATACCC
GGTATTCCAGTATTTTGCACCCTCGGAATTCCCCCACTTGTAGGCTTACA
ATGATAATTTTTCTTTTGTTCCCAATTTTTCTACAAATACCTCAATGCTT
CAACCGGTATCGTTGGAAAGAAATTTCCGAGATCATTTTTTTATTTCGTC
ACTTTATTTGGATTTTTGAAAAATTTTCATTAAAATTATAGTGCTCGTTA
ATATCTTTTAAACGATGGCAAATTCATTAAAAATGTCTAGATTGAGAAAT
AGAAAACAAAAAAATGGAAAAATAAAAGTATACTTTTGGCTTTGATATCT
CAAATTTTGGTCGGTAAAAATGTAAATCTATTTAATACCAGTCAAAAACA
ATATGATCTTTGATGAACGTATTTAATTTAAATAATTCAAATCAAAGTCA
ACCGCTGACAGATGTCATTTAATTTCGAAAAAAGATCCCAGATCTTAAAC
GCGATTAAGGAGATTCCGAGATAATTTATGAGTTTCGATTAAGAAAAAAG
AGACAGATTCAAAATGGTACCATTAAAATCGTAAACAAACATGTCTCGTT
TTTCTACGCCCTTTCAAAAACCGTTCTTTCTTTCGTTTTGCTAAAGATCA
ACAATAATTCACCTCCTGAACATTCGTAATATTACTGTAAAAAAAATCCC
AACTTCATATTTCATATTGTAAATGTAGTATTTCACGTTGTCCTCTGTCA
CTCCTTCCAGCCCGGTGCGACCAAATATTTCATCCAAATTTGTAATACAG
CCCTGTGACACAGATCTACTTAGACCCCACCCAAGTGGAGAATTTGGCCA
AAGTTTTGTCACTGGTGGGAAAATTACCCTATTATTTCAGCCCCACTGGG
AAATAATTTTTGGATTTATTCCCATTCTGAAATTTAAAGGAAATTTACAC
TTCAAAACCATCCTCCTGCTGGATTTTTCGACTCAAGAGCAAAATAATTT
GTATCCCCCTTTAGATCTCAATAGAAACTTCATCCCTACTGTGATAAAAT
TCTTACCGGGGCTTTGAGACAGGATTATTATAATGTACACTAAGTTTGTG
TTGTTTGAAATTGCATCTTTGCCATTTCTTTCCGGATTTTTTAGCAACAA
CAAAATCATGTTATCCAAACTACTTCCAACTGGGTCACTGACGGGGGGGG
GAGGAACCAAACTCATTATCTCCTCAGCAGGATAGTCAAATGGATATTTC
AATTTCATATATTGAATAAAACAAAAAACAAAAATGATCAAGAGGTTGTG
TATATTTTTTTCTGCATTGATAATTCAATTAAGTCTCCATAACTCGAACA
CGCACGGGGAACACAAAATTGACCGGGTTATGGAAATTTAGAGTTATGGA
GTAAAGTTTATAAGGCATTGTTAAATGAAGGGACGTAAAAACTTGTTCGA
GCTATAGAGGTTCTAGTTAAAATGTTTTTTTTTATTTCAGCAAAAAGTAG
TTGCGTTAACAAGGACGATATTCCAGGCCTGGAGGAAGCGGGGAGACTGG
GAAGACCTCCACACTTTTGAGCAAATCAGATTTTTTTTATCAAGTTCCTA
GCGAATTTCATCTCATTTTAAGCCTTCAGCCTCCCCATTTTAACGATTGT
TCCGCCAGGCCTGTGTTCATGTTAATTCTTTTGATGTTTTTGTATTGTGT
TGCTTTCAAGGATGAGTTGGGTAAGAGTTTTTATAAAGGAACCAACTATT
ACCAAACTTGTGGAGTTTCCAGCTCAACAATGTGTTTCAGACTTGTGCAC
TTAAAATTTTTCTTTCAATTCATTTTCCAGGCAAAAAGAAACACGAATAA
ATGACGGCAAATTGGGGAAAGATTATCATCTACGTTGGTGAAAGCTTTTG
GTAGTTCCAAAAACATCGACTTTCATCAAAGAAAATCTTTTAAAATTTAT
TATTTTTTAGAAAATATTTTTTTAGAATTTTTAAAATCTAATTATATTAT
CGTATATACTTTAACGGAACAGATGAATCCAGTGAACTTAATTATGTAAT
GTCTCACTTTCTTAGTTTAGCAAAATCGTTACCCCCTAAGTCCACTTATT
TTCAAAATTGTATTGTGAACTTGATGACTAGGGATTAGTTAGGAAAATAG
TTATTGGACTGATTTGACTAT Coding sequence (CDS) from alignment at sc0000053:509156..513226- >TCONS_00005487 ID=TCONS_00005487|Name=TCONS_00005487|organism=Clytia hemisphaerica|type=CDS|length=2412bp|location=Sequence derived from alignment at sc0000053:509156..513226- (Clytia hemisphaerica)
GCAAAAAGAAACACGAATAACTGAATGCTGGACCGGACCTGATAGCACCA
TTTACGACGCCGAAGGGCCATCAGACAAGTGCGTCACATTTGGTAGTGAA
AAATGTGACGAGAATTCCGAATTATGTTCTGGCAAGAAACATTCAAACTT
TGTGTATTTTGTTGATTCCCCTGACCATACTAAGAGTGCTGAAGAAATCA
AAAAAGAGCTTGCGGCGGAAAATAAGAAGAAGGCTAAACAAGCTGCAAAG
GAAGCTAAGAAGGCTGAAAAATCTGCGAACAAAAACAAGAAGAAACACAA
GAAATCTAAGAAAGGAAAAGCATGTGAAATAAAATTCAAGAAAATTGGAT
GCTACAAGTCAAAAAATAAAGCAAGAGGATTTAAAACATTCTTACAAGCT
GATCAAGAAGCTGACTCATTCGCCAAGAAAGGAAAAGTTGCCAACAAAGA
AACATTCAATAAACGACTACCAAATATGGTCTGTGAATGTGCAAAAGCTG
CCTTGAACTCTGGAAATGCTATCTTTTCATTGAAAAATATTGTCGGAAAC
CAGTGAAAAAGAAGTCACTGAAGAAGAAGAAGCTCCACTGAATGAGAAGA
AAGGCAAAAAGAAACACGAATAACTGAATGCTGGACCGGACCTGATAGCA
CCATTTACGACGCCGAAGGGCCATCAGACAAGTGCGTCACATTTGGTAGT
GAAAAATGTGACGAGAATTCCGAATTATGTTCTGGCAAGAAACATTCAAA
CTTTGTGTATTTTGTTGATTCCCCTGACCATACTAAGAGTGCTGAAGAAA
TCAAAAAAGAGCTTGCGGCGGAAAATAAGAAGAAGGCTAAACAAGCTGCA
AAGGAAGCTAAGAAGGCTGAAAAATCTGCGAACAAAAACAAGAAGAAACA
CAAGAAATCTAAGAAAGGAAAAGCATGTGAAATAAAATTCAAGAAAATTG
GATGCTACAAGTCAAAAAATAAAGCAAGAGGATTTAAAACATTCTTACAA
GCTGATCAAGAAGCTGACTCATTCGCCAAGAAAGGAAAAGTTGCCAACAA
AGAAACATTCAATAAACGACTACCAAATATGGTCTGTGAATGTGCAAAAG
CTGCCTTGAACTCTGGAAATGCTATCTTTTCATTGAAAAATATTGTCGGA
AACCAGTGAAAAAGAAGTCACTGAAGAAGAAGAAGCTCCACTGAATGAGA
AGAAAGGCAAAAAGAAACACGAATAACTGAATGCTGGACCGGACCTGATA
GCACCATTTACGACGCCGAAGGGCCATCAGACAAGTGCGTCACATTTGGT
AGTGAAAAATGTGACGAGAATTCCGAATTATGTTCTGGCAAGAAACATTC
AAACTTTGTGTATTTTGTTGATTCCCCTGACCATACTAAGAGTGCTGAAG
AAATCAAAAAAGAGCTTGCGGCGGAAAATAAGAAGAAGGCTAAACAAGCT
GCAAAGGAAGCTAAGAAGGCTGAAAAATCTGCGAACAAAAACAAGAAGAA
ACACAAGAAATCTAAGAAAGGAAAAGCATGTGAAATAAAATTCAAGAAAA
TTGGATGCTACAAGTCAAAAAATAAAGCAAGAGGATTTAAAACATTCTTA
CAAGCTGATCAAGAAGCTGACTCATTCGCCAAGAAAGGAAAAGTTGCCAA
CAAAGAAACATTCAATAAACGACTACCAAATATGGTCTGTGAATGTGCAA
AAGCTGCCTTGAACTCTGGAAATGCTATCTTTTCATTGAAAAATATTGTC
GGAAACCAGTGAAAAAGAAGTCACTGAAGAAGAAGAAGCTCCACTGAATG
AGAAGAAAGGCAAAAAGAAACACGAATAACTGAATGCTGGACCGGACCTG
ATAGCACCATTTACGACGCCGAAGGGCCATCAGACAAGTGCGTCACATTT
GGTAGTGAAAAATGTGACGAGAATTCCGAATTATGTTCTGGCAAGAAACA
TTCAAACTTTGTGTATTTTGTTGATTCCCCTGACCATACTAAGAGTGCTG
AAGAAATCAAAAAAGAGCTTGCGGCGGAAAATAAGAAGAAGGCTAAACAA
GCTGCAAAGGAAGCTAAGAAGGCTGAAAAATCTGCGAACAAAAACAAGAA
GAAACACAAGAAATCTAAGAAAGGAAAAGCATGTGAAATAAAATTCAAGA
AAATTGGATGCTACAAGTCAAAAAATAAAGCAAGAGGATTTAAAACATTC
TTACAAGCTGATCAAGAAGCTGACTCATTCGCCAAGAAAGGAAAAGTTGC
CAACAAAGAAACATTCAATAAACGACTACCAAATATGGTCTGTGAATGTG
CAAAAGCTGCCTTGAACTCTGGAAATGCTATCTTTTCATTGAAAAATATT
GTCGGAAACCAGTGAAAAAGAAGTCACTGAAGAAGAAGAAGCTCCACTGA
ATGAGAAGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005487-exon-sc0000053-1575043694:513166..513226 | TCONS_00005487-exon-sc0000053-1575043694:513166..513226 | Clytia hemisphaerica | exon |
| TCONS_00005487-exon-sc0000053-1575043694:512437..512658 | TCONS_00005487-exon-sc0000053-1575043694:512437..512658 | Clytia hemisphaerica | exon |
| TCONS_00005487-exon-sc0000053-1575043694:511506..511805 | TCONS_00005487-exon-sc0000053-1575043694:511506..511805 | Clytia hemisphaerica | exon |
| TCONS_00005487-exon-sc0000053-1575043694:509156..509496 | TCONS_00005487-exon-sc0000053-1575043694:509156..509496 | Clytia hemisphaerica | exon |
| TCONS_00005487-exon-sc0000053-1510915933:513166..513226 | TCONS_00005487-exon-sc0000053-1510915933:513166..513226 | Clytia hemisphaerica | exon |
| TCONS_00005487-exon-sc0000053-1510915933:512437..512658 | TCONS_00005487-exon-sc0000053-1510915933:512437..512658 | Clytia hemisphaerica | exon |
| TCONS_00005487-exon-sc0000053-1510915933:511506..511805 | TCONS_00005487-exon-sc0000053-1510915933:511506..511805 | Clytia hemisphaerica | exon |
| TCONS_00005487-exon-sc0000053-1510915933:509156..509496 | TCONS_00005487-exon-sc0000053-1510915933:509156..509496 | Clytia hemisphaerica | exon |
| TCONS_00005487-exon-sc0000053-1491911889:513166..513226 | TCONS_00005487-exon-sc0000053-1491911889:513166..513226 | Clytia hemisphaerica | exon |
| TCONS_00005487-exon-sc0000053-1491911889:512437..512658 | TCONS_00005487-exon-sc0000053-1491911889:512437..512658 | Clytia hemisphaerica | exon |
| TCONS_00005487-exon-sc0000053-1491911889:511506..511805 | TCONS_00005487-exon-sc0000053-1491911889:511506..511805 | Clytia hemisphaerica | exon |
| TCONS_00005487-exon-sc0000053-1491911889:509156..509496 | TCONS_00005487-exon-sc0000053-1491911889:509156..509496 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000053 | supercontig | sc0000053:509156..513226 - |
Blast
The following BLAST results are available for this feature:
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