TCONS_00005480 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005480
Unique NameTCONS_00005480
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1502

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005480 ID=TCONS_00005480|Name=TCONS_00005480|organism=Clytia hemisphaerica|type=transcript|length=1502bp
TACGATTTAGGTCCTTAATGGGAATCGAATCTTATGTTTGGATTACGTCA
ATCAGTTTCAAAGTAAATATTAGTTTTTGCCAACGTATGCCTATTTTTAA
GGAGTTGGATGTTTGGTTTGTAAACCCCACTCGATTTCACGGATGAATAG
ATTTtgcaaaattgacaaaaatttgagGGTTTCTGACGAAGGTGACAGAC
CAGTTGAATCTTTCTGCTGTAAAGATGAGACGACTAGCAGTGCTTTTCGC
ATTTGGTGTCTTCGTGGCATTATCTTCTTCAGCTCTTGTGGAAGTTCAAG
AAGACTATTACGAAGATGACGAAATTTACGTAACCCAACCAACTCCCACC
GAAAACCGAAACAATAACAAAGTCAACGCAAAACGTATTGTTCAACCTTA
CTGGACCCCAAGACGACCCAGAACTACATACGATCCATGGGGACCCACAA
GACCTTATTGGTGGAGCACGGCACCCCGTGGAACTGACCGACCACGAACA
TATGATCCTTGGGGACCCACCCGACCTTACTGGTGGAGTACCAGACGACC
GTGGAATACTGATCGACCAACATACGATCCTTGGGGTCCTACCAGGCCAT
ACTGGTGGAGTACTAGACGACCATGGGGTACAAGACCTTGGGGTACCAGA
AGACCATGGGGTACAAGACCTTGGGGAACTAGACGACCATGGGGTACTAG
AAGACCATGGGGCACCAGACGACCATGGGGAACAAGAAGACCATGGGGTA
CAAGAAGACCTTGGGGAACAAGACGACCATGGGGCACCAGAAGACCATGG
TGGACCAGACGACCATGGGGTACAAGACGACCTTGGGGAACAAGACGACC
ATGGGGCACCAGAAGACCATGGTGGACCAGACGACCATGGGGTACAAGAC
GACCATGGGGTACAAGACGACCATGGGGAACCAGAAGACCTTGGGGTACC
AGAAAACCTTGGGGAACCAGACGACCATGGGGTACAAGACGACCATGGGG
TACAAGACGACCATGGGGAACCAGAAGACCTTGGGGTACAAGACGACCTT
GGGGAACAAGACGACCATGGGGTACAAGAAGACCATGGGGTACAAGAAGA
CCATGGGGTACGAGAAGACCACTCAACCCATACGTTGAGCGTAGAATCCA
GAATTTCAGCCGTATGATTGGAATGAAGTTGAGAGAGTTTGTCATTTCAT
TGCGTAGAAACCAACCCCCGCGTCGACCAAATGAATAATGTACCAATGGA
TGATCTTCCAGCTCCGTTGATTTGAATTATATtttactgaggttaagcat
accaagatgttgacaaaaaatgtaataggctagtgaaaattggattgatt
tgaaatttgattggttgaaactcactagccgtagcctgttaaattttcgt
tcgtcgtcgtgattttcaCGATTTACTTAACTTCACTATTATCAAAGTTT
ATGGTTTTatgtaaataaaaatgattAATTTGAATGAGCGGTTGTTTTGC
CA
Run BLAST on NCBI

transcript from alignment at sc0000053:346689..349767-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005480 ID=TCONS_00005480|Name=TCONS_00005480|organism=Clytia hemisphaerica|type=transcript|length=3079bp|location=Sequence derived from alignment at sc0000053:346689..349767- (Clytia hemisphaerica)
TACGATTTAGGTCCTTAATGGGAATCGAATCTTATGTTTGGATTACGTCA
ATCAGTTTCAAAGTAAATATTAGTTTTTGCCAACGTATGCCTATTTTTAA
GGAGTTGGATGTTTGGTTTGTAAACCCCACTCGATTTCACGGATGAATAG
ATTTTGCAAAATTGACAAAAATTTGAGGTCAGTATTGGCGCTATAGAAAC
CCCTTTCTGATTGGCTCGAGTTACTTTTTAATCACCCTTTTACCCAATCA
ACTGTCATCTTTTATCTGTAATTGTAACACTTTTTTTTCTCTCATGCAAT
AAATTTAGGGTTTCTGACGAAGGTGACAGACCAGTTGAATCTTTCTGCTG
TAAAGATGAGACGACTAGCAGTGCTTTTCGCATTTGGTGTCTTCGTGGCA
TTATCTTCTTCAGCTCGTAAGTATACTGTACTTCTCAATGGGCTCTTCAA
GAAAATTTGTGTACATGGGGGGTGGAGGATATATTGGATATTTTGTCCGG
GTGGTAGTGAAAAATCTGCAAAAGATACCTGCTTGTTTTGGGGGCAAATT
TGCTCTGTTTAGACCCCTGAATGTCTAATTTTTGAATGTCTTTTTGTGGA
GAATAAAGGAAATAAAACTGAAGTTCCGAGTTCCCCAAGGAGCATTAATT
TGGGGGCCTTTTNAATATTGGTGAAAATTGAGTTAAAAATTTCTCGCGAG
AAATCGGTCATACTTTAAACGTGCTTTTTTTTGGGTTTTTGGGAGAGGAA
AGACTTTTATTTTCCTCACGCAAGGATGAAGATAAAAAACAAATAGAAAT
TCAAATTAAGTATTAGAGGTACTTGGCGACACCGATCACTCCAAAGACCA
CAGTGCTTTACGGTAGAATATAAAGAGTGCCTTTTTTCAATACCTCTTAA
CAGAGTCAACAATTATTTAACAATTAAACTCAATGCGTAAGTAAAAGCGT
TTTCATTTTGCTATCTCAATAGAACAAAAAATAGCAAACATTGTTTAAAA
AATTTCATAATTGAATTGGGAATAAGTCATCAACTTTTCTCATATTGTCA
AGTCCATTAAAAATTGAAATGTTTTTATCAGAGTATCAAATAGAAGGGAA
ATGTCATCGGAGCTTTATTAATCTCAAGGGTAATCATAAATATGATGTCT
TTTTGAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNAATTATGCTGATAGTGCTATTGCACAGTCAGTTGTGTTTCTCCAT
CAAGGAGAAATGTGCTCTCTTGAATGGAAGTGCACTTGGCGAATAGAATT
GAATATACAATCAAAAAGGCGCGAAAAAAATTGCCGTGTATTTAAAAATC
CCTAGCGAAAAAGCCTCATGCGAGAATGGGAGAGTTCCGATTTAAGCGTA
TTATAATATAGATAATAATTTGTTTCAGTTGTGGAAGTTCAAGAAGACTA
TTACGAAGATGACGAAATTTACGTAACCCAACCAACTCCCACCGAAAACC
GAAACAATAACAAAGTCAACGCAAAACGTATTGTTCAACCTTACTGGACC
CCAAGACGACCCAGAACTACATACGATCCATGGGGACCCACAAGACCTTA
TTGGTGGAGCACGGCACCCCGTGGAACTGACCGACCACGAACATATGATC
CTTGGGGACCCACCCGACCTTACTGGTGGAGTACCAGACGACCGTGGAAT
ACTGATCGACCAACATACGATCCTTGGGGTCCTACCAGGCCATACTGGTG
GAGTACTAGACGACCATGGGGTACAAGACCTTGGGGTACCAGAAGACCAT
GGGGTACAAGACCTTGGGGAACTAGACGACCATGGGGTACTAGAAGACCA
TGGGGCACCAGACGACCATGGGGAACAAGAAGACCATGGGGTACAAGAAG
ACCTTGGGGAACAAGACGACCATGGGGCACCAGAAGACCATGGTGGACCA
GACGACCATGGGGTACAAGACGACCTTGGGGAACAAGACGACCATGGGGC
ACCAGAAGACCATGGTGGACCAGACGACCATGGGGTACAAGACGACCATG
GGGTACAAGACGACCATGGGGAACCAGAAGACCTTGGGGTACCAGAAAAC
CTTGGGGAACCAGACGACCATGGGGTACAAGACGACCATGGGGTACAAGA
CGACCATGGGGAACCAGAAGACCTTGGGGTACAAGACGACCTTGGGGAAC
AAGACGACCATGGGGTACAAGAAGACCATGGGGTACAAGAAGACCATGGG
GTACGAGAAGACCACTCAACCCATACGTTGAGCGTAGAATCCAGAATTTC
AGCCGTATGATTGGAATGAAGTTGAGAGAGTTTGTCATTTCATTGGTAAG
GGCCTAAGATCATTAGTCTTTTTGAGTAAATTTAAGATAAATTTTGAAAA
AGAAAATAATTTTAAAATCTGCTTAAATCGTCAAGTTACAGTGACGAGAT
TCTGAGGCAAGCTACGAAGTCCCTCCCTCCCCCCGACCCCGACCCCGACG
AAAAATCTTTTTTGGCAACTTTCAGGGGCTAGTGACAAAGATTTTCACAA
AAATTACGAATTTCTTCGACGAGAAGTTTTGTATAACGCCTAAGGTATCT
CACTCAATTTTCATGCTTTTATTTTACAGCGTAGAAACCAACCCCCGCGT
CGACCAAATGAATAATGTACCAATGGATGATCTTCCAGCTCCGTTGATTT
GAATTATATTTTACTGAGGTTAAGCATACCAAGATGTTGACAAAAAATGT
AATAGGCTAGTGAAAATTGGATTGATTTGAAATTTGATTGGTTGAAACTC
ACTAGCCGTAGCCTGTTAAATTTTCGTTCGTCGTCGTGATTTTCACGATT
TACTTAACTTCACTATTATCAAAGTTTATGGTTTTATGTAAATAAAAATG
ATTAATTTGAATGAGCGGTTGTTTTGCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003111XLOC_003111Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005480-exon-sc0000053-1575043694:349591..349767TCONS_00005480-exon-sc0000053-1575043694:349591..349767Clytia hemisphaericaexon
TCONS_00005480-exon-sc0000053-1575043694:349352..349459TCONS_00005480-exon-sc0000053-1575043694:349352..349459Clytia hemisphaericaexon
TCONS_00005480-exon-sc0000053-1575043694:347273..348189TCONS_00005480-exon-sc0000053-1575043694:347273..348189Clytia hemisphaericaexon
TCONS_00005480-exon-sc0000053-1575043694:346689..346988TCONS_00005480-exon-sc0000053-1575043694:346689..346988Clytia hemisphaericaexon
TCONS_00005480-exon-sc0000053-1510915933:349591..349767TCONS_00005480-exon-sc0000053-1510915933:349591..349767Clytia hemisphaericaexon
TCONS_00005480-exon-sc0000053-1510915933:349352..349459TCONS_00005480-exon-sc0000053-1510915933:349352..349459Clytia hemisphaericaexon
TCONS_00005480-exon-sc0000053-1510915933:347273..348189TCONS_00005480-exon-sc0000053-1510915933:347273..348189Clytia hemisphaericaexon
TCONS_00005480-exon-sc0000053-1510915933:346689..346988TCONS_00005480-exon-sc0000053-1510915933:346689..346988Clytia hemisphaericaexon
TCONS_00005480-exon-sc0000053-1491911889:349591..349767TCONS_00005480-exon-sc0000053-1491911889:349591..349767Clytia hemisphaericaexon
TCONS_00005480-exon-sc0000053-1491911889:349352..349459TCONS_00005480-exon-sc0000053-1491911889:349352..349459Clytia hemisphaericaexon
TCONS_00005480-exon-sc0000053-1491911889:347273..348189TCONS_00005480-exon-sc0000053-1491911889:347273..348189Clytia hemisphaericaexon
TCONS_00005480-exon-sc0000053-1491911889:346689..346988TCONS_00005480-exon-sc0000053-1491911889:346689..346988Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000053supercontigsc0000053:346689..349767 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.259159	0	0	0.0888498	1.63944	1.69944	0.57864	0.740214	1.44543	0.936283	5.01983	5.46071	7.26346	13.8469	3.05626	4.34417	7.66638	9.77971	0.838928	0.437015	0.604068	1.69932	6.88343	4.81026	0	0	6.20451	3.32317
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005480 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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