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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005425 ID=TCONS_00005425|Name=TCONS_00005425|organism=Clytia hemisphaerica|type=transcript|length=798bp
tcNAAGCTGGAGGTCAATTGAGTGTATTTCAAGATGGGAAGTTAATTCAT
CAATGGACTGGGGCAAGTCATTTCGAAGAATTGGGTTATTCATCAAGTGT
TGGTTATCATGGTCGGTTCATCGCTGTTTCGTCACCCGGTGCAGATGTTA
AATCTACGGAAGCCGGCATTCCAGTCACGCTAACCCAAGCTGGTCTCGTC
TCCGTCTATTATTTCCCTGATAAATATATGTCCAAGAAACCTGTTCTTGT
TTTCCGAATGCTTGGTGACCGCGCGTACGGCCGCTTCGGAGAGATTGTTC
GCTTGCAAGATGTGACTGGAGATTTTGGAGACGAATTGATTGTCAGTGCA
CCACGAAGAACGACTGATGTCACTGAGGAATTGAACGGAGGTGAGGAGGG
AGCAGTATTCATTTACAAATTACCAGAAGTTGGTGATCAACCAATCACTT
TCACCACTGATCAAGCATTCAAATCATTCATTGGTACTGAGcacAACGCA
CGATTGGGAAGTTCAATCCACGTCATGCGAGGTAACAAATCCATTCGTTT
GTTAACTGGTGCAACTACCAGTTCAAAGTATGGCTTCAAATCTGGATTGC
TTCATAATTTCTTACTGCACAAATATCAATGAAGATTTCTTGGTTCTTAG
AACCCCTTTTCTtctataatttgttcttagggaATTAAGCGAGACTAGTA
CAATGTAAcgagtattttttttctttgatttacatATACACTGGGAACTC
TTAGTAGAGAAGGAACTCCTAGAAGCGAGAGAACTCCTTGAAGGGATG Run BLAST on NCBI protein sequence of TCONS_00005425-protein >TCONS_00005425-protein ID=TCONS_00005425-protein|Name=TCONS_00005425-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
XAGGQLSVFQDGKLIHQWTGASHFEELGYSSSVGYHGRFIAVSSPGADVK
STEAGIPVTLTQAGLVSVYYFPDKYMSKKPVLVFRMLGDRAYGRFGEIVR
LQDVTGDFGDELIVSAPRRTTDVTEELNGGEEGAVFIYKLPEVGDQPITF
TTDQAFKSFIGTEHNARLGSSIHVMRGNKSIRLLTGATTSSKYGFKSGLL
HNFLLHKYQ Run BLAST on NCBI transcript from alignment at sc0000053:450730..455154+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005425 ID=TCONS_00005425|Name=TCONS_00005425|organism=Clytia hemisphaerica|type=transcript|length=4425bp|location=Sequence derived from alignment at sc0000053:450730..455154+ (Clytia hemisphaerica)
tcNAAGCTGGAGGTCAATTGAGTGTATTTCAAGATGGGAAGTTAATTCAT
CAATGGACTGGGGCAAGTCATTTCGAAGAATTGGGTTATTCATCAAGTGT
TGGTTATCATGGTCGGTTCATCGCTGTTTCGTCACCCGGTGCAGGTAGGA
TAAAGATACCAATTTTATTGACTTCAATATGGATAAAACATTTACTGCCT
TCCTCACTtagacaaatcagaagctaatCATCTCCGCCGTTCTCAagagt
gcaaatacataaacttgctaatATGTTGGTCGTCTAACATGATGTGATTT
GCTGGAACAAATCCAACACCTATAAAAATGTTCGGGAGTCTTATGAGGAG
GCCAGTTTCTAGGCTCGGTGTTGTAGGTGTTTTCTACGTTTATTGCTGTT
TCGAGGCTATGAAAGTAACCCAAATCTGCGGAAGCCGGTCTGATTTGCTG
GAACAAATCTAATACCTAAAAAAAGGTCCGAGAGTCTTGGGAGAGGGCCA
GTGTCTAGGCTCGGTATTGTAGGTATTATCTATGGTTATGATGTTTAATG
GCGACGAATTGACGATacagagtctgctaaattgcgtgggatgcgtgggt
gcgtgggtcaatatttttgcgtgggtcatttttttgcgtgggtgcgtggg
tcaaaatattttttgcgtgggtcaaattttttgcgtgggtaatttttttt
acgtgggtcaaattttttgcgtgggtcatattttttgcgtgggtcatatt
ttttgcgtgggtcattattttttgcgtgggtcaaaatttttgcgtgggtc
aaaattctctgtaattcgaaaaaatgcctTCCCTTGAAATTCGAACTGGT
CACATCCAAAACGTTGGATGTGTTTTACATAAcacgttttggtttatttt
gtttattttgtatagCTGTACAGCTCCGTATTTTCTGAATATGGTGAATT
TGTTCTCAATAAACGAGGTCGGAAAGAATGTTTCCAACAGGGGAGTGTCT
TTTTATAAGTGGAATTTTCCCTTTTGGGAGATTTCGTCCAAAATTAATAC
TGCGATTACGTTTTGTATATACCTATAAATGGCCAAAAATATGTACACAA
TCAAGCGGCTTTATATTTTTAATTCCGCTGACTGAACATGTCAGCTTTTA
TAGCTTCTTATAGCACGCTTTAATCTTTTGGCTTTCCTTTGAGTGTTAAA
GAACAAATTAAATGgcgacaaaatctgaaaatttttctacgTTATATTCA
TTAGGCGACCGATTACTAAACAGTTTAATCGTTGTCAATTATTTCGTCCA
CCCcacttgtaatttctttgatttaagtacattaaaggccaatttaaaaa
attggacgaAATAAAGACGCTGTNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNaatattgacccacgcaaaaatattgacccacgcac
ccacgcaacccacgcaatttagcagactcgacGATACACGTTTCATTTAC
CTTCTATCTACATTTACAGATGTTAAATCTACGGAAGCCGGCATTCCAGT
CACGCTAACCCAAGCTGGTCTCGTCTCCGTCTATTATTTCCCTGATAAAT
ATATGTCCAAGAAACCTGTTCTTGTTTTCCGAATGCTTGGTGACCGCGCG
TACGGCCGCTTCGGAGAGATTGTTCGCTTGCAAGATGTGACTGGAGATTT
TGGAGACGAATTGATTGTCAGTGCACCACGAAGAACGACTGATGTCACTG
AGGAATTGAACGGAGGTATGTTTGTATGTTTAAATTGCATCAAAATTGCA
TCAGacatttttttaagttaaaaaccAAACAAGCCTTCTGCGAGCTATGT
TTCAGATGTTTCAACTTTAAGAAGCAGCATGGGAAATAGTACACTAGCCA
AAGCTATTTTCAAAgtaattatgattttttttaaataaaagaatatgtTC
AGTATATATCAACATAAAGTTCCACGGGTTTAAATGATGTCGTCGAGAAG
TTATGAATCCTTTAATATCCGGGTATCCAGTGATCCACTTGGTCTTAAGG
GGCAAGACTTAGTTAAACCGTTTGATTTAATAAATTGTACGTCCTCGATA
TTTCTCCGCCATCATTATAGGTGAGGAGGGAGCAGTATTCATTTACAAAT
TACCAGAAGTTGGTGATCAACCAATCACTTTCACCACTGATCAAGCATTC
AAATCATTCATTGGTACTGAGGTAAAGCCTATTTTCTGGTTGTAacactt
ttgattttattttgaaaactacATATACAATGATTATGATCAGAACATAT
TGACATTCCTGGGTATTTTATTTAGCGTAAttgcagaatttaaagttcgg
atGGCGTATTTAAAGAGTCACAAGTTGAAATGTGTATTTCGAGGAGCTGT
ATTAAATTggagttatttatttttttcaatactttACACTATCTAGAAGT
TtagctttatttttgataaatcaAAGACCAAATTAACGATGAAATCAGGA
TTCTAGGCCGACAAATTCTGGGGAAATTTTAGTATCGATGAACATGAATG
GTTTTTTCTCCGGTATTAAATCGACTAAGACTCCTCATACTCATAGACTC
CTACGTCCCAACAgtaaactttgaaaatgtcCGGTTAAAAAAATGTCCGT
GTATACTTTTGATCCCGTGAAATTTCCTATTTTATATTGCTGAATTTGCT
TTCCAATGGTGTATAATAAATTTTTCTACCTACGACCCTTTTTGCATGAA
ATCCTATAGGACCATTTTGTGGTTGTTTTCTCAGATCTTTCCTATTAAAA
GATCAGATCAGAGTTGAATATTTACGAGACGTTTTTAAATATcgtaaatt
ttatgtttttattttcagcacAACGCACGATTGGGAAGTTCAATCCACGT
CATGCGAGGTAACAAATCCATTCGTTTGTTAACTGGTGCAACTACCAGTT
CAAAGTATGGCTTCAAATCTGGATTGCTTCATAATTTCTTACTGCACAAA
TATCAATGAAGATTTCTTGGTTCTTAGAACCCCTTTTCTtctataatttg
ttcttagggaATTAAGCGAGACTAGTACAATGTAAcgagtattttttttc
tttgatttacatATACACTGGGAACTCTTAGTAGAGAAGGAACTCCTAGA
AGCGAGAGAACTCCTTGAAGGGATG Coding sequence (CDS) from alignment at sc0000053:450730..455154+ >TCONS_00005425 ID=TCONS_00005425|Name=TCONS_00005425|organism=Clytia hemisphaerica|type=CDS|length=2520bp|location=Sequence derived from alignment at sc0000053:450730..455154+ (Clytia hemisphaerica)
NAAGCTGGAGGTCAATTGAGTGTATTTCAAGATGGGAAGTTAATTCATCA
ATGGACTGGGGCAAGTCATTTCGAAGAATTGGGTTATTCATCAAGTGTTG
GTTATCATGGTCGGTTCATCGCTGTTTCGTCACCCGGTGCAGATGTTAAA
TCTACGGAAGCCGGCATTCCAGTCACGCTAACCCAAGCTGGTCTCGTCTC
CGTCTATTATTTCCCTGATAAATATATGTCCAAGAAACCTGTTCTTGTTT
TCCGAATGCTTGGTGACCGCGCGTACGGCCGCTTCGGAGAGATTGTTCGC
TTGCAAGATGTGACTGGAGATTTTGGAGACGAATTGATTGTCAGTGCACC
ACGAAGAACGACTGATGTCACTGAGGAATTGAACGGAGGTGAGGAGGGAG
CAGTATTCATTTACAAATTACCAGAAGTTGGTGATCAACCAATCACTTTC
ACCACTGATCAAGCATTCAAATCATTCATTGGTACTGAGcacAACGCACG
ATTGGGAAGTTCAATCCACGTCATGCGAGGTAACAAATCCATTCGTTTGT
TAACTGGTGCAACTACCAGTTCAAAGTATGGCTTCAAATCTGGATTGCTT
CATAATTTCTTACTGCACAAATATCAATGANAAGCTGGAGGTCAATTGAG
TGTATTTCAAGATGGGAAGTTAATTCATCAATGGACTGGGGCAAGTCATT
TCGAAGAATTGGGTTATTCATCAAGTGTTGGTTATCATGGTCGGTTCATC
GCTGTTTCGTCACCCGGTGCAGATGTTAAATCTACGGAAGCCGGCATTCC
AGTCACGCTAACCCAAGCTGGTCTCGTCTCCGTCTATTATTTCCCTGATA
AATATATGTCCAAGAAACCTGTTCTTGTTTTCCGAATGCTTGGTGACCGC
GCGTACGGCCGCTTCGGAGAGATTGTTCGCTTGCAAGATGTGACTGGAGA
TTTTGGAGACGAATTGATTGTCAGTGCACCACGAAGAACGACTGATGTCA
CTGAGGAATTGAACGGAGGTGAGGAGGGAGCAGTATTCATTTACAAATTA
CCAGAAGTTGGTGATCAACCAATCACTTTCACCACTGATCAAGCATTCAA
ATCATTCATTGGTACTGAGcacAACGCACGATTGGGAAGTTCAATCCACG
TCATGCGAGGTAACAAATCCATTCGTTTGTTAACTGGTGCAACTACCAGT
TCAAAGTATGGCTTCAAATCTGGATTGCTTCATAATTTCTTACTGCACAA
ATATCAATGANAAGCTGGAGGTCAATTGAGTGTATTTCAAGATGGGAAGT
TAATTCATCAATGGACTGGGGCAAGTCATTTCGAAGAATTGGGTTATTCA
TCAAGTGTTGGTTATCATGGTCGGTTCATCGCTGTTTCGTCACCCGGTGC
AGATGTTAAATCTACGGAAGCCGGCATTCCAGTCACGCTAACCCAAGCTG
GTCTCGTCTCCGTCTATTATTTCCCTGATAAATATATGTCCAAGAAACCT
GTTCTTGTTTTCCGAATGCTTGGTGACCGCGCGTACGGCCGCTTCGGAGA
GATTGTTCGCTTGCAAGATGTGACTGGAGATTTTGGAGACGAATTGATTG
TCAGTGCACCACGAAGAACGACTGATGTCACTGAGGAATTGAACGGAGGT
GAGGAGGGAGCAGTATTCATTTACAAATTACCAGAAGTTGGTGATCAACC
AATCACTTTCACCACTGATCAAGCATTCAAATCATTCATTGGTACTGAGc
acAACGCACGATTGGGAAGTTCAATCCACGTCATGCGAGGTAACAAATCC
ATTCGTTTGTTAACTGGTGCAACTACCAGTTCAAAGTATGGCTTCAAATC
TGGATTGCTTCATAATTTCTTACTGCACAAATATCAATGANAAGCTGGAG
GTCAATTGAGTGTATTTCAAGATGGGAAGTTAATTCATCAATGGACTGGG
GCAAGTCATTTCGAAGAATTGGGTTATTCATCAAGTGTTGGTTATCATGG
TCGGTTCATCGCTGTTTCGTCACCCGGTGCAGATGTTAAATCTACGGAAG
CCGGCATTCCAGTCACGCTAACCCAAGCTGGTCTCGTCTCCGTCTATTAT
TTCCCTGATAAATATATGTCCAAGAAACCTGTTCTTGTTTTCCGAATGCT
TGGTGACCGCGCGTACGGCCGCTTCGGAGAGATTGTTCGCTTGCAAGATG
TGACTGGAGATTTTGGAGACGAATTGATTGTCAGTGCACCACGAAGAACG
ACTGATGTCACTGAGGAATTGAACGGAGGTGAGGAGGGAGCAGTATTCAT
TTACAAATTACCAGAAGTTGGTGATCAACCAATCACTTTCACCACTGATC
AAGCATTCAAATCATTCATTGGTACTGAGcacAACGCACGATTGGGAAGT
TCAATCCACGTCATGCGAGGTAACAAATCCATTCGTTTGTTAACTGGTGC
AACTACCAGTTCAAAGTATGGCTTCAAATCTGGATTGCTTCATAATTTCT
TACTGCACAAATATCAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005425-exon-sc0000053-1491911889:450730..450873 | TCONS_00005425-exon-sc0000053-1491911889:450730..450873 | Clytia hemisphaerica | exon |
| TCONS_00005425-exon-sc0000053-1510915933:450730..450873 | TCONS_00005425-exon-sc0000053-1510915933:450730..450873 | Clytia hemisphaerica | exon |
| TCONS_00005425-exon-sc0000053-1575043694:450730..450873 | TCONS_00005425-exon-sc0000053-1575043694:450730..450873 | Clytia hemisphaerica | exon |
| TCONS_00005425-exon-sc0000053-1491911889:453499..453744 | TCONS_00005425-exon-sc0000053-1491911889:453499..453744 | Clytia hemisphaerica | exon |
| TCONS_00005425-exon-sc0000053-1510915933:453499..453744 | TCONS_00005425-exon-sc0000053-1510915933:453499..453744 | Clytia hemisphaerica | exon |
| TCONS_00005425-exon-sc0000053-1575043694:453499..453744 | TCONS_00005425-exon-sc0000053-1575043694:453499..453744 | Clytia hemisphaerica | exon |
| TCONS_00005425-exon-sc0000053-1491911889:454100..454200 | TCONS_00005425-exon-sc0000053-1491911889:454100..454200 | Clytia hemisphaerica | exon |
| TCONS_00005425-exon-sc0000053-1510915933:454100..454200 | TCONS_00005425-exon-sc0000053-1510915933:454100..454200 | Clytia hemisphaerica | exon |
| TCONS_00005425-exon-sc0000053-1575043694:454100..454200 | TCONS_00005425-exon-sc0000053-1575043694:454100..454200 | Clytia hemisphaerica | exon |
| TCONS_00005425-exon-sc0000053-1491911889:454848..455154 | TCONS_00005425-exon-sc0000053-1491911889:454848..455154 | Clytia hemisphaerica | exon |
| TCONS_00005425-exon-sc0000053-1510915933:454848..455154 | TCONS_00005425-exon-sc0000053-1510915933:454848..455154 | Clytia hemisphaerica | exon |
| TCONS_00005425-exon-sc0000053-1575043694:454848..455154 | TCONS_00005425-exon-sc0000053-1575043694:454848..455154 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000053 | supercontig | sc0000053:450730..455154 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013519 | Int_alpha_beta-p |
Blast
The following BLAST results are available for this feature:
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