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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005414 ID=TCONS_00005414|Name=TCONS_00005414|organism=Clytia hemisphaerica|type=transcript|length=3403bpRun BLAST on NCBI protein sequence of TCONS_00005414-protein >TCONS_00005414-protein ID=TCONS_00005414-protein|Name=TCONS_00005414-protein|organism=Clytia hemisphaerica|type=polypeptide|length=722bp MAPEIHNMQVELGSAEIYFAKKLANNDKKIRDRTLKKLKSWLKSKGTSEERun BLAST on NCBI transcript from alignment at sc0000053:317732..344148+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005414 ID=TCONS_00005414|Name=TCONS_00005414|organism=Clytia hemisphaerica|type=transcript|length=26417bp|location=Sequence derived from alignment at sc0000053:317732..344148+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000053:317732..344148+ >TCONS_00005414 ID=TCONS_00005414|Name=TCONS_00005414|organism=Clytia hemisphaerica|type=CDS|length=30366bp|location=Sequence derived from alignment at sc0000053:317732..344148+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00005414 vs. Swiss-Prot (Human)
Match: RRP1B (Ribosomal RNA processing protein 1 homolog B OS=Homo sapiens GN=RRP1B PE=1 SV=3) HSP 1 Score: 128.257 bits (321), Expect = 4.279e-30 Identity = 75/179 (41.90%), Postives = 115/179 (64.25%), Query Frame = 1
Query: 493 MQVELGSAEIYFAKKLANNDKKIRDRTXXXXXXXXXXXGTSEEG-IDENELLKLWKGLFYCMWFSDKPLVQEELADNLAEIINLFSPSSNGILFGKTFLKTMGREWFGIDRLRLDKFYMXXXXXXXXXXXXXXNQQWNTEFLETASSFLIEILL--DSQYPDGLKLYFSENILSILKDV 1020
M + AEI FA++LA+++K IRDR +KKL+ ++ K E G + ELLK+WKGLFYCMW D+PL+QEELA+ +A++++ + S+ LF +TF +TM REW GIDRLRLDK+YMLI+ ++ + W ++ L++ +L +SQ P+G++ +F + L L V
Sbjct: 1 MAPAMQPAEIQFAQRLASSEKGIRDRAVKKLRQYISVKTQRETGGFSQEELLKIWKGLFYCMWVQDEPLLQEELANTIAQLVHAVNNSAAQHLFIQTFWQTMNREWKGIDRLRLDKYYMLIRLVLRQSFEVLKRNGWEESRIKVFLDVLMKEVLCPESQSPNGVRFHFIDIYLDELSKV 179 The following BLAST results are available for this feature:
BLAST of TCONS_00005414 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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