TCONS_00005411 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005411
Unique NameTCONS_00005411
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length483

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005411 ID=TCONS_00005411|Name=TCONS_00005411|organism=Clytia hemisphaerica|type=transcript|length=483bp
TTCTGCTAGCAAAGTTGCTAAGATCAAAGAAGAGGACGGCGAAGAATCAG
ATCAAGAAGATGACGTCGAAAACCAGACCCAGTCCCCTTCACCCACCTCG
TCTCCAGCCTCCCATAAAAAGAAGCGATTCTCAAAAATCTTAAAACGTAT
GTTCGGAAAAACACCTAAAGGAAAATATCAAGCAGAAGAATTGATCGTCA
TCGAAACGGAACCACAACCATCCCGTGAAATCTTCGTTAAGGAATACGAC
CCGACTAGCGACAGTGTCGCACGATTTAACGATTTCGCACGACGAACTTT
TGCAAACTCTAATAGAGATGAACCATCCGTGAACAGTTTGGCTTCCCAGC
AAGGGCCAGTCCCTTCCCAACAAGGACCGGTCCCTTCCCAACGATCAAGT
CGAATTTGAATTCTAAGACTTCAATGTGTATATTTGGTTTTTTTCGTGGT
TACAATAATAATGATATACTGTAAATATTGAAA
Run BLAST on NCBI

protein sequence of TCONS_00005411-protein

>TCONS_00005411-protein ID=TCONS_00005411-protein|Name=TCONS_00005411-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
SASKVAKIKEEDGEESDQEDDVENQTQSPSPTSSPASHKKKRFSKILKRM
FGKTPKGKYQAEELIVIETEPQPSREIFVKEYDPTSDSVARFNDFARRTF
ANSNRDEPSVNSLASQQGPVPSQQGPVPSQRSSRI
Run BLAST on NCBI

transcript from alignment at sc0000053:90403..91287+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005411 ID=TCONS_00005411|Name=TCONS_00005411|organism=Clytia hemisphaerica|type=transcript|length=885bp|location=Sequence derived from alignment at sc0000053:90403..91287+ (Clytia hemisphaerica)
TTCTGCTAGCAAAGTTGCTAAGGTATTTCGATTTTCCTTGTCATTTTCTT
TATTGAGTTTTCTTCTCTGAATAATTAAAACTTCCAGGAAGTATGCTGTG
ATTTTTAATGTGTACATTTAGTACTaacgatttgactgaaattttgagCT
GAAATAAAGGAGGTTGTTGGAAAGGTGTTTGCTGTTGAGAAGTGCCTCTT
GCTCTTACACTTTTATCACACAGGTGTTCTaaagtttttgagttttaatc
cTGCGAATCTTCTTAAATTGTtcatattttcaccattttggtCGTTTTGT
ATTACAGTCCACAAAAGTCTCATGGATAACCGAGTGGGGTGGCTGTATAT
CTTTTGTAAAAACAGTGTctaaaaatctcaatatatcAGGCTTATTCACG
TAAAACATGAATTTCTTTCTTCAGATCAAAGAAGAGGACGGCGAAGAATC
AGATCAAGAAGATGACGTCGAAAACCAGACCCAGTCCCCTTCACCCACCT
CGTCTCCAGCCTCCCATAAAAAGAAGCGATTCTCAAAAATCTTAAAACGT
ATGTTCGGAAAAACACCTAAAGGAAAATATCAAGCAGAAGAATTGATCGT
CATCGAAACGGAACCACAACCATCCCGTGAAATCTTCGTTAAGGAATACG
ACCCGACTAGCGACAGTGTCGCACGATTTAACGATTTCGCACGACGAACT
TTTGCAAACTCTAATAGAGATGAACCATCCGTGAACAGTTTGGCTTCCCA
GCAAGGGCCAGTCCCTTCCCAACAAGGACCGGTCCCTTCCCAACGATCAA
GTCGAATTTGAATTCTAAGACTTCAATGTGTATATTTGGTTTTTTTCGTG
GTTACAATAATAATGATATACTGTAAATATTGAAA

Coding sequence (CDS) from alignment at sc0000053:90403..91287+

>TCONS_00005411 ID=TCONS_00005411|Name=TCONS_00005411|organism=Clytia hemisphaerica|type=CDS|length=816bp|location=Sequence derived from alignment at sc0000053:90403..91287+ (Clytia hemisphaerica)
TCTGCTAGCAAAGTTGCTAAGATCAAAGAAGAGGACGGCGAAGAATCAGA
TCAAGAAGATGACGTCGAAAACCAGACCCAGTCCCCTTCACCCACCTCGT
CTCCAGCCTCCCATAAAAAGAAGCGATTCTCAAAAATCTTAAAACGTATG
TTCGGAAAAACACCTAAAGGAAAATATCAAGCAGAAGAATTGATCGTCAT
CGAAACGGAACCACAACCATCCCGTGAAATCTTCGTTAAGGAATACGACC
CGACTAGCGACAGTGTCGCACGATTTAACGATTTCGCACGACGAACTTTT
GCAAACTCTAATAGAGATGAACCATCCGTGAACAGTTTGGCTTCCCAGCA
AGGGCCAGTCCCTTCCCAACAAGGACCGGTCCCTTCCCAACGATCAAGTC
GAATTTGATCTGCTAGCAAAGTTGCTAAGATCAAAGAAGAGGACGGCGAA
GAATCAGATCAAGAAGATGACGTCGAAAACCAGACCCAGTCCCCTTCACC
CACCTCGTCTCCAGCCTCCCATAAAAAGAAGCGATTCTCAAAAATCTTAA
AACGTATGTTCGGAAAAACACCTAAAGGAAAATATCAAGCAGAAGAATTG
ATCGTCATCGAAACGGAACCACAACCATCCCGTGAAATCTTCGTTAAGGA
ATACGACCCGACTAGCGACAGTGTCGCACGATTTAACGATTTCGCACGAC
GAACTTTTGCAAACTCTAATAGAGATGAACCATCCGTGAACAGTTTGGCT
TCCCAGCAAGGGCCAGTCCCTTCCCAACAAGGACCGGTCCCTTCCCAACG
ATCAAGTCGAATTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003084XLOC_003084Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005411-proteinTCONS_00005411-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005411-exon-sc0000053-1491911889:90403..90424TCONS_00005411-exon-sc0000053-1491911889:90403..90424Clytia hemisphaericaexon
TCONS_00005411-exon-sc0000053-1510915933:90403..90424TCONS_00005411-exon-sc0000053-1510915933:90403..90424Clytia hemisphaericaexon
TCONS_00005411-exon-sc0000053-1575043694:90403..90424TCONS_00005411-exon-sc0000053-1575043694:90403..90424Clytia hemisphaericaexon
TCONS_00005411-exon-sc0000053-1491911889:90827..91287TCONS_00005411-exon-sc0000053-1491911889:90827..91287Clytia hemisphaericaexon
TCONS_00005411-exon-sc0000053-1510915933:90827..91287TCONS_00005411-exon-sc0000053-1510915933:90827..91287Clytia hemisphaericaexon
TCONS_00005411-exon-sc0000053-1575043694:90827..91287TCONS_00005411-exon-sc0000053-1575043694:90827..91287Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000053supercontigsc0000053:90403..91287 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.388442	0.378793	0.733024	0	0	0	0.166468	0	0.109111	0.135152	0	0	0	0	0.147047	0.078902	0	0	0	0	0	0.183189	0	0.134972	5.97777	8.43677	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005411 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top