TCONS_00005408 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005408
Unique NameTCONS_00005408
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2092

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005408 ID=TCONS_00005408|Name=TCONS_00005408|organism=Clytia hemisphaerica|type=transcript|length=2092bp
ctATCTACAGGTTTACCTCTGACAATGCGTTCCTGCTTGTACCCTGTGTT
CGGTAAGAAGATCTTGGGACGATTAGGTGACGTCATCGACAGTATATCTA
TTATTTGTATGGGGTTCGGAGTAGCCACCTCCTTCCTGTTAGGCGCCATT
ATGGTGGTAGTAGGGTTACAACCTATCTTTCCTGAACTAGCTGACAACCA
GACTACAAGACTGATTGCGTNGGGTTCGGAGTAGCCACCTCCTTCCTGTT
AGGAGCCATCATGGTTGTAGTAGGGTTACAACCTATCTTTCCTGAACTAG
CTGACAACCAGACTACAAGACTGATTGCGTTATGGGCTGTCTCTATCATG
TCAATGTTTTCGGCAACGAGTGGTATCAAACTTGGTATCAGGAGGATGTC
GCAACTATGCTTCTTAACAGGAGCTTTATTCACATTAATTGTTGCGTTCA
GTGACAACCTGTGGTATTTACTCAATCTGGCTGTTCAATCGATTGGTTAC
TATTTCCAATACCTCATATCAACATCAACATTCACAAGTGCTTTCGTTCA
ACAAAGAAATTATCCTGATGGCAAACAACAGGAATTTGATTGGATGCATA
AAAATACCATTTTCTATTggGGCTGGTGGTTAGGTTGGGCACCTTTGGTC
TCTATATTTGCTACACGGATCAGTAAAGGTCGAACAATCAAAAGTGTGAT
CGAAATTGCTTTCATAATCCCAAGTTTTGTCAATTTCATTTGGTTTGTCG
TTGTAGGAGGTGTGTCCATTGATATGGAAAATCAAGCCATTTCAATGAGA
CTCCATTGCGGCATGAACAAAACAACACGTGATGCTTTAGGAGCTCCTGA
TTGGCTACACAGTCTCGGTTGTATTGATGAAGACAAACGATTCTATATGG
TAATCGAAAAATATGAAGATATCAAGATTATTCTTCAGATTATCGCTTTG
ATGCTTACCTTACTGTATTTTATCACGAGTTTCGATTCAGCTGCTCTCGT
CATGGGCACCATCTCCAGTAACGGTCTAGAGGAGCCACCATTGATTCAAC
GTATTTTCTGGTGCATCACCATAGCTGCTTGTACTTCAGCTCTTATTGTT
TATACTGAATTCACTGATCGTGCTGATGTCAATGCTTTTGCTATTCTGGC
TGGCCTTCCGTTCGCAGTTTTGATGTGTTTCTGTGCTATTTCACTGTGGC
GATTATTGAAAATGGAACCATATTGGTTTTACAATGAAGTCGCTCACTGG
GAAATGATTTATGGTCATATTGATGATATTCAAATACTGAAAAAAGTCCT
GTTAGCAATTGTTGCTCCCTGGTACTACCTAGGGCAAATGGCAATTAAAC
TTAGCCTAAATCACCATGGCGACAAGAATGGTAACCATGTTGGTGAAGGA
CATCCGCCCGTGTCCGCCCAAACTACAGGAAGTCCACCCTTATCCAACCA
AAAACGATTTTTCGCGTACTTCAAATTTGCTTTCCCATTCTACTTATGGA
TTGTTTTACTTCTTTTACAAATTCGATACCAAAACATAAATAGTGTTGGC
TGGGCTGTTTTTGTCGGGTTCTTGGTCCTTTCGAGTCGCATTCGTAGAGC
TCTTCGTCGCCAGTATCGAATACAAGGAAATGTTTTCGAAGATATTGCGA
TCATGGCGATTTTCCCGTTTACCGTGGTCCAGATGTATCGACAGGTCACT
TTCGGTGAAAGATCAATCGAAACTGGTGGACGAGCATCCAGGCTAAACAG
TGATACCACAGAAATGAAGAACAACCCATCCACCAAAAGTAACAGAGGAC
AACGCAATTTAGCCTACATACAGGATGAATCATTTTCGCCTGAATCTCCG
CCCATCTATCAATCTGGTGAAGATTTCTTAGCTGCTTAACGTGTATTGCT
CTGCAGTTGGTActcaacgttgttttaacattcACACAACATTATAAATT
TGGATGTTAAAAGGATGTGATTTAAACTTTCGTTGATCTTTAGATGGATC
AATGCAGTTCattcaaacaaatttaaaacgaTATTCCATcgtttaaaaga
agtttttctattgaaaaatgataaaaattgatACTCGTCATc
Run BLAST on NCBI

transcript from alignment at sc0000053:10126..15733+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005408 ID=TCONS_00005408|Name=TCONS_00005408|organism=Clytia hemisphaerica|type=transcript|length=5608bp|location=Sequence derived from alignment at sc0000053:10126..15733+ (Clytia hemisphaerica)
ctATCTACAGGTTTACCTCTGACAATGCGTTCCTGCTTGTACCCTGTGTT
CGGTAAGAAGATCTTGGGACGATTAGGTGACGTCATCGACAGTATATCTA
TTATTTGTATGGGGTTCGGAGTAGCCACCTCCTTCCTGTTAGGCGCCATT
ATGGTGGTAGTAGGGTTACAACCTATCTTTCCTGAACTAGCTGACAACCA
GACTACAAGACTGATTGCGTNGGGTTCGGAGTAGCCACCTCCTTCCTGTT
AGGAGCCATCATGGTTGTAGTAGGGTTACAACCTATCTTTCCTGAACTAG
CTGACAACCAGACTACAAGACTGATTGCGTTATGGGCTGTCTCTATCATG
TCAATGTTTTCGGCAACGAGTGGTATCAAACTTGGTATCAGGAGGATGTC
GCAACTATGCTTCTTAACAGGTACAGTCAACTcttgcttattcgaacttc
tattatttgaatctttctataatccgAACTTAATCTCAGTTCCCGTCAGG
AAGAAACCCTCTTAGGATACTCTCTATAAATCGAATCTCTCTGTTATcca
acaaataagattccccgctCGAGTTCGATTTAGCAAGAGTCTAATTTATC
TGTTACATAGTTCTTTCGTCCCTGTGAAGTATGAAAAAGAGGGTTTTCTG
CCTTAgaattttagcaaaatattaaaaacaatctAGCTTAATTTGTCGTG
TCTATTTTACTTCTGAGAGGAAAAGATTTACTTTAACCACTGCTTTTAGG
ATTGTATCATTTCAAGCAAAGaatctttattttctatttttcgcATTACC
ACTGGAACATGATATCAGTAGGGATGTAAAAAAATGTCATATCATATCTG
tttaaattcaattcaattttggTGTTCACGAGCATTTAGTCACTCCACCC
TCCTAACAAGGGAAGATAAATAAACTCGCTTAtttttcgtcaaaaattga
agttACCTTTCGTTATGATACCAGTTTAATTCaataatatttcaatttca
GGAGCTTTATTCACATTAATTGTTGCGTTCAGTGACAACCTGTGGTATTT
ACTCAATCTGGCTGTTCAATCGATTGGTTACTATTTCCAATACCTCATAT
CAACATCAACATTCACAAGTGCTTTCGTTCAACAAAGAAATTATCCTGAT
GGCAAACAACAGGAATTTGATTGGATGCATAAAAATACCATTTTCTATTG
TAAGTTGAATTAATTCAGTACTACAgtacctccataactcgaacctctat
aactcgaatacctccttaactcgaacaattttgTATTCCCCCCGTGAGGG
TTCGAGTTGTGGAGACTATTTAGTATAAAGCTCAACTCTAGGCCTCATCC
CTGTTGAGATGGTCGATAGTGTATATCCTTTTTCGGGGCTTTCGAGGCTG
CCAACAATggaattaaagtctattcacgataagtgtgcactcttttttct
tttactgataacttttgaaggaattcttcaatttttataaatttggtatc
aNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNAAATACCGAAGTGTTTtgacgtga
ttaccgaaattccgCACAAAAACAAGCCCATTTCCGCAATACCGAAatct
cgtacgccccccacttatagtgcaatttttcgaaattttttgcccttttc
agggcaaaattttttgcaatttctcaaattttacctcaaaatttgttatt
ttcccaaattttacaccctttgcactttttcccacttgctcacaaatcaa
cccttacagtgtactttccaaagtccaaaacacCTATCCTTAAGGGCtgc
acgtccggtaggtcacttacctggagtgcccccccccggggggtaAAAAG
CCATGTCACAAAGACAGAGGATTTATACAAATCGTTTTGACTTTTTAAGT
TTCTCATGACGAATTACAATACAAAATTATGACtatcatattattttttt
tcgattaaATATACTACTCACCTCGAGTTAATAAATCGCAATATCTATTT
AGTTGAAAGGCCATGAAATATCTGCTattatcattttcttctttttcttt
ttagggGGCTGGTGGTTAGGTTGGGCACCTTTGGTCTCTATATTTGCTAC
ACGGATCAGTAAAGGTCGAACAATCAAAAGTGTGATCGAAATTGCTTTCA
TAATCCCAAGTTTTGTCAATTTCATTTGGTTTGTCGTTGTAGGAGGTGTG
TCCATTGATATGGAAAATCAAGCCATTTCAATGAGACTCCATTGCGGCAT
GAACAAGTAGGTGGTCTCACGCACTAAGATAGCTcggtttttgaaaagtt
ttagcTACGCGGGacttattttacaaaataaGTTGGGACTGAACCTCGAA
AGTTTCTCAAAAACTTCTGATTTTTCTAATTTCGCATAAAATTGCACTCT
TGGACTGAACtgactttttatatttttgttttgacggCCCTACCTAGAAC
TGTTATGTGTTTACTTTGGCGGTAAGCATTGCTATAAATCCAGCGTtcgt
gtgaaaaccacgcgggtcaTGCAATTTACATAAAAAAGGAGTTCAAAAAT
ACAGCAAGATTTCATTGAAATACTATCTATCTTATTTTTACTAGAACAAC
ACGTGATGCTTTAGGAGCTCCTGATTGGCTACACAGTCTCGGTTGTATTG
ATGAAGACAAACGATTCTATATGGTAATCGAAAAATATGAAGATATCAAG
ATTATTCTTCAGATTATCGCTTTGATGCTTACCTTACTGTATTTTATCAC
GAGTTTCGATTCAGCTGCTCTCGTCATGGGCACCATCTCCAGTAACGGTT
agtcctttgttttttttctcatttttgtgaCTATTCCTTGTTCTTTAATT
AAACTACAACTTTGTATCAAAACCGCGACTGAAAcctgtccattttccta
atgaTAAAACGGTTCATAACAGCGAATGAGGGCGGCATGGCCGAAACGAA
AGATTTTCTGGGAAATAGAATCCTATACAAAGCGATGGTATTTTGTACAA
TCTAcccttttcgaaattttattcTTATTCTTACAGGTCTAGAGGAGCCA
CCATTGATTCAACGTATTTTCTGGTGCATCACCATAGCTGCTTGTACTTC
AGCTCTTATTGTTTATACTGAATTCACTGATCGTGCTGATGTCAATGCTT
TTGCTATTCTGGCTGGCCTTCCGTTCGCAGTTTTGATGTGTTTCTGTGCT
ATTTCACTGTGGCGGTGAGTTAATTATCATTAATCGGGAACTCTAGATAA
GTCCCCCACCCTCCCGAACAGTTAGCTAAAACATTTTCGCACGGGAAATT
GAATCAATCCAACTAGCTCCTTTTAAAATCAAACCCTTGGCAGGTACCAA
GATGAACGTTCTGTTTGAAAGAATATTCATTAAAGCAAAGGTAACATATA
CCAAACATGTATATTTTCATAGATTATTGAAAATGGAACCATATTGGTTT
TACAATGAAGTCGCTCACTGGGAAATGATTTATGGTCATATTGATGATAT
TCAAATACTGAAAAAAGTCCTGTTAGCAATTGTTGCTCCCTGGTACTACC
TAGGGCAAATGGCAATTAAACTTAGCCTAAATCACCATGGCGACAAGAAT
GGTAACCATGTTGGTGAAGGACATCCGCCCGTGTCCGCCCAAACTACAGG
AAGTCCACCCTTATCCAACCAAAAACGATTTTTCGCGTACTTCAAATTTG
CTTTCCCATTCTACTTATGGATTGTTTTACTTCTTTTACAAATTCGATAC
CAAAACATAAATAGTGTTGGCTGGGCTGTTTTTGTCGGGTTCTTGGTCCT
TTCGAGTCGCATTCGTAGAGCTCTTCGTCGCCAGTATCGAATACAAGGAA
ATGTTTTCGAAGATATTGCGATCATGGCGATTTTCCCGTTTACCGTGGTC
CAGATGTATCGACAGGTTACTACAAATTATACTTTCAAATCTTGAATTGA
CTTTTCTCGTACCCCATCGTATGAGTTTTAGGAAAAAAGGATCAGAATCT
AAATCAAATTTCACTACGGATGTTATTTGCCATtgcgaaaagattttttc
aatatgTAGTTAAATTcccttttcatttgaaataagtttttcttttttcg
aaacTACGGTACTCATCGCCTGACCCATGAAGTTATTGCCTTTTTCTCGC
GTCATTTCAGGTCACTTTCGGTGAAAGATCAATCGAAACTGGTGGACGAG
CATCCAGGCTAAACAGTGATACCACAGAAATGAAGAACAACCCATCCACC
AAAAGTAACAGAGGACAACGCAATTTAGCCTACATACAGGATGAATCATT
TTCGCCTGAATCTCCGCCCATCTATCAATCTGGTGAAGATTTCTTAGCTG
CTTAACGTGTATTGCTCTGCAGTTGGTActcaacgttgttttaacattcA
CACAACATTATAAATTTGGATGTTAAAAGGATGTGATTTAAACTTTCGTT
GATCTTTAGATGGATCAATGCAGTTCattcaaacaaatttaaaacgaTAT
TCCATcgtttaaaagaagtttttctattgaaaaatgataaaaattgatAC
TCGTCATc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003082XLOC_003082Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005408-exon-sc0000053-1491911889:10126..10545TCONS_00005408-exon-sc0000053-1491911889:10126..10545Clytia hemisphaericaexon
TCONS_00005408-exon-sc0000053-1510915933:10126..10545TCONS_00005408-exon-sc0000053-1510915933:10126..10545Clytia hemisphaericaexon
TCONS_00005408-exon-sc0000053-1575043694:10126..10545TCONS_00005408-exon-sc0000053-1575043694:10126..10545Clytia hemisphaericaexon
TCONS_00005408-exon-sc0000053-1491911889:11127..11324TCONS_00005408-exon-sc0000053-1491911889:11127..11324Clytia hemisphaericaexon
TCONS_00005408-exon-sc0000053-1510915933:11127..11324TCONS_00005408-exon-sc0000053-1510915933:11127..11324Clytia hemisphaericaexon
TCONS_00005408-exon-sc0000053-1575043694:11127..11324TCONS_00005408-exon-sc0000053-1575043694:11127..11324Clytia hemisphaericaexon
TCONS_00005408-exon-sc0000053-1491911889:13230..13431TCONS_00005408-exon-sc0000053-1491911889:13230..13431Clytia hemisphaericaexon
TCONS_00005408-exon-sc0000053-1510915933:13230..13431TCONS_00005408-exon-sc0000053-1510915933:13230..13431Clytia hemisphaericaexon
TCONS_00005408-exon-sc0000053-1575043694:13230..13431TCONS_00005408-exon-sc0000053-1575043694:13230..13431Clytia hemisphaericaexon
TCONS_00005408-exon-sc0000053-1491911889:13770..13972TCONS_00005408-exon-sc0000053-1491911889:13770..13972Clytia hemisphaericaexon
TCONS_00005408-exon-sc0000053-1510915933:13770..13972TCONS_00005408-exon-sc0000053-1510915933:13770..13972Clytia hemisphaericaexon
TCONS_00005408-exon-sc0000053-1575043694:13770..13972TCONS_00005408-exon-sc0000053-1575043694:13770..13972Clytia hemisphaericaexon
TCONS_00005408-exon-sc0000053-1491911889:14212..14389TCONS_00005408-exon-sc0000053-1491911889:14212..14389Clytia hemisphaericaexon
TCONS_00005408-exon-sc0000053-1510915933:14212..14389TCONS_00005408-exon-sc0000053-1510915933:14212..14389Clytia hemisphaericaexon
TCONS_00005408-exon-sc0000053-1575043694:14212..14389TCONS_00005408-exon-sc0000053-1575043694:14212..14389Clytia hemisphaericaexon
TCONS_00005408-exon-sc0000053-1491911889:14598..15090TCONS_00005408-exon-sc0000053-1491911889:14598..15090Clytia hemisphaericaexon
TCONS_00005408-exon-sc0000053-1510915933:14598..15090TCONS_00005408-exon-sc0000053-1510915933:14598..15090Clytia hemisphaericaexon
TCONS_00005408-exon-sc0000053-1575043694:14598..15090TCONS_00005408-exon-sc0000053-1575043694:14598..15090Clytia hemisphaericaexon
TCONS_00005408-exon-sc0000053-1491911889:15336..15733TCONS_00005408-exon-sc0000053-1491911889:15336..15733Clytia hemisphaericaexon
TCONS_00005408-exon-sc0000053-1510915933:15336..15733TCONS_00005408-exon-sc0000053-1510915933:15336..15733Clytia hemisphaericaexon
TCONS_00005408-exon-sc0000053-1575043694:15336..15733TCONS_00005408-exon-sc0000053-1575043694:15336..15733Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000053supercontigsc0000053:10126..15733 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.33372	0.236345	0.282688	0.60335	0.258253	2.41301e-07	0.176109	0.164871	0	0.142979	0.138779	0.0474234	13.2712	13.4567	1.11918	1.40371	1.18423	0.403553	11.8979	11.7019	0.813205	1.16366	5.95609	15.1305	14.9583	10.4109	0.932257	2.49183	0.70632	1.24995
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005408 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top