TCONS_00005398 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005398
Unique NameTCONS_00005398
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length576

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005398 ID=TCONS_00005398|Name=TCONS_00005398|organism=Clytia hemisphaerica|type=transcript|length=576bp
TTTTCATGCTGGAAAAAGAAACCTACCGAATGTAAAAGTAATGGCGAGAT
TCGATGCTCAAACTGTTCCGTTGCCATAGGTAACCAAAGCTCTGTGGCTG
TGGATCTTGCCTCGCTCGGCCAAAAGTATCAGAATTTGATATAATTTTAG
TGTGCACATTTTCAGAGGTAAGGAATCAGCAGTATAAACCTCTATACTAT
CTATCAAATTCTCATCTGGGTTAGTTCGGAAAAAGATAAACACCAATTAG
AATTCCGACCTCTTAAACAGCAATGCAAGTACAATAATAGCTAGCTGCAC
AATCGAAAGAAAGAGCTTTGCCTTACTAACGTCAATTAAGTCTTTCAACT
TTAATGCAAATGATCTCTGAAGCTATTGCTCTAGAACCAGCTGACAAAAC
TATTTAAAACgagttaaaaatttattttggcctGGCCATCCATCCTACCA
AAGCTTTGATGTATTATTCCTTGAAACCGATCTCTTGGTTTTTTTTAAGC
TAGACGCACCAAATTCGCCAGGAACTTTATCCTTGCTTCTTCCGAGATCG
TATCATTGTGGAAACCAAAACTAGTT
Run BLAST on NCBI

transcript from alignment at sc0000052:508328..508903

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005398 ID=TCONS_00005398|Name=TCONS_00005398|organism=Clytia hemisphaerica|type=transcript|length=576bp|location=Sequence derived from alignment at sc0000052:508328..508903 (Clytia hemisphaerica)
AACTAGTTTTGGTTTCCACAATGATACGATCTCGGAAGAAGCAAGGATAA
AGTTCCTGGCGAATTTGGTGCGTCTAGCTTAAAAAAAACCAAGAGATCGG
TTTCAAGGAATAATACATCAAAGCTTTGGTAGGATGGATGGCCaggccaa
aataaatttttaactcGTTTTAAATAGTTTTGTCAGCTGGTTCTAGAGCA
ATAGCTTCAGAGATCATTTGCATTAAAGTTGAAAGACTTAATTGACGTTA
GTAAGGCAAAGCTCTTTCTTTCGATTGTGCAGCTAGCTATTATTGTACTT
GCATTGCTGTTTAAGAGGTCGGAATTCTAATTGGTGTTTATCTTTTTCCG
AACTAACCCAGATGAGAATTTGATAGATAGTATAGAGGTTTATACTGCTG
ATTCCTTACCTCTGAAAATGTGCACACTAAAATTATATCAAATTCTGATA
CTTTTGGCCGAGCGAGGCAAGATCCACAGCCACAGAGCTTTGGTTACCTA
TGGCAACGGAACAGTTTGAGCATCGAATCTCGCCATTACTTTTACATTCG
GTAGGTTTCTTTTTCCAGCATGAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003072XLOC_003072Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005398-exon-sc0000052-1491911889:508328..508903TCONS_00005398-exon-sc0000052-1491911889:508328..508903Clytia hemisphaericaexon
TCONS_00005398-exon-sc0000052-1510915933:508328..508903TCONS_00005398-exon-sc0000052-1510915933:508328..508903Clytia hemisphaericaexon
TCONS_00005398-exon-sc0000052-1575043694:508328..508903TCONS_00005398-exon-sc0000052-1575043694:508328..508903Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000052supercontigsc0000052:508328..508903 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005398 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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