TCONS_00005394 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005394
Unique NameTCONS_00005394
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length460

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005394 ID=TCONS_00005394|Name=TCONS_00005394|organism=Clytia hemisphaerica|type=transcript|length=460bp
GCGATGAATTGGTAACACTGTTTTCGAGTCACTGTTCCCACTAACAATCC
ACAACTCTTTCAATCCACGATATACCCAACGGCTATAGTGATATATAGAG
CAAACAAATACATCAGTATCACCAGACGCTAGAACGACTCTTTCTATGTT
GTCTGTTGTTATCGCCTGGTGAATGTGAAACATCATTCGGTCATCAGCTT
CTTCATGATTGCACCTTAAGGACTCGATATCATGTGACGGGTTGACGGAG
CATACTTTGATGCAAGCGGTGACGTTTTCTTCGCCGGCTCCACCTAAATA
AATAGGTGTGTCGTTTATATGATTTTCTTGCACCCACTTGCTAAAAGCTT
GTTGGAACCGCATCTTATTCTCGGAAGATGACCAAAATCGATCCATGTCA
ACAGGGAGGTGTTGTTTCACGTTTATTATGTGTGTTTCTATTGGGTCTTG
TTTGCTTCGC
Run BLAST on NCBI

protein sequence of TCONS_00005394-protein

>TCONS_00005394-protein ID=TCONS_00005394-protein|Name=TCONS_00005394-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
RSKQDPIETHIINVKQHLPVDMDRFWSSSENKMRFQQAFSKWVQENHIND
TPIYLGGAGEENVTACIKVCSVNPSHDIESLRCNHEEADDRMMFHIHQAI
TTDNIERVVLASGDTDVFVCSIYHYSRWVYRGLKELWIVSGNSDSKTVLP
IHR
Run BLAST on NCBI

transcript from alignment at sc0000052:445651..446110

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005394 ID=TCONS_00005394|Name=TCONS_00005394|organism=Clytia hemisphaerica|type=transcript|length=460bp|location=Sequence derived from alignment at sc0000052:445651..446110 (Clytia hemisphaerica)
GCGAAGCAAACAAGACCCAATAGAAACACACATAATAAACGTGAAACAAC
ACCTCCCTGTTGACATGGATCGATTTTGGTCATCTTCCGAGAATAAGATG
CGGTTCCAACAAGCTTTTAGCAAGTGGGTGCAAGAAAATCATATAAACGA
CACACCTATTTATTTAGGTGGAGCCGGCGAAGAAAACGTCACCGCTTGCA
TCAAAGTATGCTCCGTCAACCCGTCACATGATATCGAGTCCTTAAGGTGC
AATCATGAAGAAGCTGATGACCGAATGATGTTTCACATTCACCAGGCGAT
AACAACAGACAACATAGAAAGAGTCGTTCTAGCGTCTGGTGATACTGATG
TATTTGTTTGCTCTATATATCACTATAGCCGTTGGGTATATCGTGGATTG
AAAGAGTTGTGGATTGTTAGTGGGAACAGTGACTCGAAAACAGTGTTACC
AATTCATCGC

Coding sequence (CDS) from alignment at sc0000052:445651..446110

>TCONS_00005394 ID=TCONS_00005394|Name=TCONS_00005394|organism=Clytia hemisphaerica|type=CDS|length=459bp|location=Sequence derived from alignment at sc0000052:445651..446110 (Clytia hemisphaerica)
CGAAGCAAACAAGACCCAATAGAAACACACATAATAAACGTGAAACAACA
CCTCCCTGTTGACATGGATCGATTTTGGTCATCTTCCGAGAATAAGATGC
GGTTCCAACAAGCTTTTAGCAAGTGGGTGCAAGAAAATCATATAAACGAC
ACACCTATTTATTTAGGTGGAGCCGGCGAAGAAAACGTCACCGCTTGCAT
CAAAGTATGCTCCGTCAACCCGTCACATGATATCGAGTCCTTAAGGTGCA
ATCATGAAGAAGCTGATGACCGAATGATGTTTCACATTCACCAGGCGATA
ACAACAGACAACATAGAAAGAGTCGTTCTAGCGTCTGGTGATACTGATGT
ATTTGTTTGCTCTATATATCACTATAGCCGTTGGGTATATCGTGGATTGA
AAGAGTTGTGGATTGTTAGTGGGAACAGTGACTCGAAAACAGTGTTACCA
ATTCATCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003068XLOC_003068Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005394-exon-sc0000052-1491911889:445651..446110TCONS_00005394-exon-sc0000052-1491911889:445651..446110Clytia hemisphaericaexon
TCONS_00005394-exon-sc0000052-1510915933:445651..446110TCONS_00005394-exon-sc0000052-1510915933:445651..446110Clytia hemisphaericaexon
TCONS_00005394-exon-sc0000052-1575043694:445651..446110TCONS_00005394-exon-sc0000052-1575043694:445651..446110Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005394-proteinTCONS_00005394-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000052supercontigsc0000052:445651..446110 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.370194	0.137834	0.640155	0.939437	0.953062	0.753122	2.08564	2.21164	0.945133	1.08751	1.36587	1.01981	0	0.448352	0	0	0.106108	0	0.150253	0.157229	0.273322	0	0.162064	0	0.151756	0.677195	0.193813	0	0.238056	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029060PIN_domain-like
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005394 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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