TCONS_00005390 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005390
Unique NameTCONS_00005390
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length361

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005390 ID=TCONS_00005390|Name=TCONS_00005390|organism=Clytia hemisphaerica|type=transcript|length=361bp
CGGTAGGCCAACAAATTCCATCCCCCAACCATTGGAGCTATTGTTTAGAT
ATTTTCACCATGAGAACTGACATATCCTTTCTACGTGCACGGTTTTGTTG
TAAAAACATCCACATTTTTGAAGGCTTAGGTTGTTcccaactttttgagt
tttaagactACAATGTTCTTAACAGGTTCTCATTTTCCccaattttgtga
gtatttttgtccattttcctaagaaatcggttgttttagagtccccagag
cctcaaaatgttcttaacttgttcttaacatgttggccatcgaagcctta
tggtTTTATACACAATCCCAGATAAAAGGTTGTAGACATTTCAAAAATAC
atgaataattt
Run BLAST on NCBI

transcript from alignment at sc0000052:397177..397537

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005390 ID=TCONS_00005390|Name=TCONS_00005390|organism=Clytia hemisphaerica|type=transcript|length=361bp|location=Sequence derived from alignment at sc0000052:397177..397537 (Clytia hemisphaerica)
aaattattcatGTATTTTTGAAATGTCTACAACCTTTTATCTGGGATTGT
GTATAAAaccataaggcttcgatggccaacatgttaagaacaagttaaga
acattttgaggctctggggactctaaaacaaccgatttcttaggaaaatg
gacaaaaatactcacaaaattggGGAAAATGAGAACCTGTTAAGAACATT
GTagtcttaaaactcaaaaagttgggAACAACCTAAGCCTTCAAAAATGT
GGATGTTTTTACAACAAAACCGTGCACGTAGAAAGGATATGTCAGTTCTC
ATGGTGAAAATATCTAAACAATAGCTCCAATGGTTGGGGGATGGAATTTG
TTGGCCTACCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003064XLOC_003064Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005390-exon-sc0000052-1491911889:397177..397537TCONS_00005390-exon-sc0000052-1491911889:397177..397537Clytia hemisphaericaexon
TCONS_00005390-exon-sc0000052-1510915933:397177..397537TCONS_00005390-exon-sc0000052-1510915933:397177..397537Clytia hemisphaericaexon
TCONS_00005390-exon-sc0000052-1575043694:397177..397537TCONS_00005390-exon-sc0000052-1575043694:397177..397537Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000052supercontigsc0000052:397177..397537 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.227608	0.528549	0	0	0	0	0	0.786747	0.730885	0	0.467919	0.776155	1.28967	1.32536	0.711156	0.175217	0.179592	0.744348	0.259635	0.451341	0.660444	0.267619	0.243304	0.250598	0.223653	0	0.683124	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005390 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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