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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005389 ID=TCONS_00005389|Name=TCONS_00005389|organism=Clytia hemisphaerica|type=transcript|length=1092bp
ATACTGTAGTGTGCCGCTTCTCTTTTAAAGACACACCTCCATCTCACGTG
ACCATTTTTTTGGAAGTCAGCAAGAAGAGCTCGAAAAAGTTGTCATTTAG
GAATATTGTTGATAATATATGCGTTGAATGAAAATCATTTTATAATTTAA
TTGTTATAAATAAGTCTACTcgtctttgtttttcttttctttctgctGAT
CGGCTGAAGTACCGGCAACCGATTTCTTCGTTGTTCGCTCAAAAACACTT
TCTAACAAAGATGCAAAAGCTTCCCTTTCTTCATCATTTTTCCCatttaa
aatttcttcaacCATTTCTCGGATTTCATTtgaatcttcttttttcttct
ttgccCCCGCTAAATTTTCCCCGCCAGCGCTCGCTATCTTCTTTTCCACC
TTCTTTTCAACAGCAACTGATTTTTCAGCCGTTTTTTTGGattcaatttt
gtcttcgatcGATTTTTTCTCCGTCTTGGTCGATTTTGCTTCTTCCACTT
TAGTATCAGCGCTGATTTCGCTACTCTTCTTTTGTACGCATTCTCGTTTT
CGAGTGTTACAAAGTTCATTCGTTTCGTCTCNGTCGATTTAGCTTCTTCC
ACTTTAGTATCAGCGCTGATTTCGCTACTCTTCTTTTGCATGCATTCTCG
TTTTCGAGTGTTACAAAGTTCCTTCGTTTCGTCTCTTTTCTTTTCCTCGA
TaacttcttttttctctttccgATCTGTATGCAATGCTCTCTTTTCTTCT
TGAATAATTTCACGTTTGCTGTTCTCGCGGCCGCtcatatcttttttttc
ttctcgtcTTGCTTCCTCGTCAATCGCGCGGACGACTAGATCAACCAAAT
CGCGTAACGAATCATTATCCATGACAACGGTATCCATGATAACGGTAGCC
TTCTCTTCTCTAGAGGCTGTTTCACGCTTATCAACGGTGTTCTCTTTCAC
ACCTGATACATCAtctctcttttcttttgctTCACGCATATCGTTTGATA
ATAGATcatgtttttcttctttatcatcTCGGCTTTCTCGTTTTGAGTTC
TCTCTCTTTTCAGCCGCGTCCAAGATCTTCTCTAAGCCTTTA Run BLAST on NCBI protein sequence of TCONS_00005389-protein >TCONS_00005389-protein ID=TCONS_00005389-protein|Name=TCONS_00005389-protein|organism=Clytia hemisphaerica|type=polypeptide|length=235bp
KGLEKILDAAEKRENSKRESRDDKEEKHDLLSNDMREAKEKRDDVSGVKE
NTVDKRETASREEKATVIMDTVVMDNDSLRDLVDLVVRAIDEEARREEKK
DMSGRENSKREIIQEEKRALHTDRKEKKEVIEEKKRDETKELCNTRKREC
MQKKSSEISADTKVEEAKSXETKRMNFVTLENENAYKRRVAKSALILKWK
KQNRPRRRKNRSKTKLNPKKRLKNQLLLKRRWKRR Run BLAST on NCBI transcript from alignment at sc0000052:379748..380839 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005389 ID=TCONS_00005389|Name=TCONS_00005389|organism=Clytia hemisphaerica|type=transcript|length=1092bp|location=Sequence derived from alignment at sc0000052:379748..380839 (Clytia hemisphaerica)
TAAAGGCTTAGAGAAGATCTTGGACGCGGCTGAAAAGAGAGAGAACTCAA
AACGAGAAAGCCGAgatgataaagaagaaaaacatgATCTATTATCAAAC
GATATGCGTGAagcaaaagaaaagagagaTGATGTATCAGGTGTGAAAGA
GAACACCGTTGATAAGCGTGAAACAGCCTCTAGAGAAGAGAAGGCTACCG
TTATCATGGATACCGTTGTCATGGATAATGATTCGTTACGCGATTTGGTT
GATCTAGTCGTCCGCGCGATTGACGAGGAAGCAAgacgagaagaaaaaaa
agatatgaGCGGCCGCGAGAACAGCAAACGTGAAATTATTCAAGAAGAAA
AGAGAGCATTGCATACAGATcggaaagagaaaaaagaagttATCGAGGAA
AAGAAAAGAGACGAAACGAAGGAACTTTGTAACACTCGAAAACGAGAATG
CATGCAAAAGAAGAGTAGCGAAATCAGCGCTGATACTAAAGTGGAAGAAG
CTAAATCGACNGAGACGAAACGAATGAACTTTGTAACACTCGAAAACGAG
AATGCGTACAAAAGAAGAGTAGCGAAATCAGCGCTGATACTAAAGTGGAA
GAAGCAAAATCGACCAAGACGGAGAAAAAATCgatcgaagacaaaattga
atCCAAAAAAACGGCTGAAAAATCAGTTGCTGTTGAAAAGAAGGTGGAAA
AGAAGATAGCGAGCGCTGGCGGGGAAAATTTAGCGGGggcaaagaagaaa
aaagaagattcaAATGAAATCCGAGAAATGgttgaagaaattttaaatGG
GAAAAATGATGAAGAAAGGGAAGCTTTTGCATCTTTGTTAGAAAGTGTTT
TTGAGCGAACAACGAAGAAATCGGTTGCCGGTACTTCAGCCGATCagcag
aaagaaaagaaaaacaaagacgAGTAGACTTATTTATAACAATTAAATTA
TAAAATGATTTTCATTCAACGCATATATTATCAACAATATTCCTAAATGA
CAACTTTTTCGAGCTCTTCTTGCTGACTTCCAAAAAAATGGTCACGTGAG
ATGGAGGTGTGTCTTTAAAAGAGAAGCGGCACACTACAGTAT Coding sequence (CDS) from alignment at sc0000052:379748..380839 >TCONS_00005389 ID=TCONS_00005389|Name=TCONS_00005389|organism=Clytia hemisphaerica|type=CDS|length=708bp|location=Sequence derived from alignment at sc0000052:379748..380839 (Clytia hemisphaerica)
AAAGGCTTAGAGAAGATCTTGGACGCGGCTGAAAAGAGAGAGAACTCAAA
ACGAGAAAGCCGAgatgataaagaagaaaaacatgATCTATTATCAAACG
ATATGCGTGAagcaaaagaaaagagagaTGATGTATCAGGTGTGAAAGAG
AACACCGTTGATAAGCGTGAAACAGCCTCTAGAGAAGAGAAGGCTACCGT
TATCATGGATACCGTTGTCATGGATAATGATTCGTTACGCGATTTGGTTG
ATCTAGTCGTCCGCGCGATTGACGAGGAAGCAAgacgagaagaaaaaaaa
gatatgaGCGGCCGCGAGAACAGCAAACGTGAAATTATTCAAGAAGAAAA
GAGAGCATTGCATACAGATcggaaagagaaaaaagaagttATCGAGGAAA
AGAAAAGAGACGAAACGAAGGAACTTTGTAACACTCGAAAACGAGAATGC
ATGCAAAAGAAGAGTAGCGAAATCAGCGCTGATACTAAAGTGGAAGAAGC
TAAATCGACNGAGACGAAACGAATGAACTTTGTAACACTCGAAAACGAGA
ATGCGTACAAAAGAAGAGTAGCGAAATCAGCGCTGATACTAAAGTGGAAG
AAGCAAAATCGACCAAGACGGAGAAAAAATCgatcgaagacaaaattgaa
tCCAAAAAAACGGCTGAAAAATCAGTTGCTGTTGAAAAGAAGGTGGAAAA
GAAGATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005389-exon-sc0000052-1491911889:379748..380839 | TCONS_00005389-exon-sc0000052-1491911889:379748..380839 | Clytia hemisphaerica | exon |
| TCONS_00005389-exon-sc0000052-1510915933:379748..380839 | TCONS_00005389-exon-sc0000052-1510915933:379748..380839 | Clytia hemisphaerica | exon |
| TCONS_00005389-exon-sc0000052-1575043694:379748..380839 | TCONS_00005389-exon-sc0000052-1575043694:379748..380839 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000052 | supercontig | sc0000052:379748..380839 . |
Blast
The following BLAST results are available for this feature:
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