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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005377 ID=TCONS_00005377|Name=TCONS_00005377|organism=Clytia hemisphaerica|type=transcript|length=2416bpRun BLAST on NCBI protein sequence of TCONS_00005377-protein >TCONS_00005377-protein ID=TCONS_00005377-protein|Name=TCONS_00005377-protein|organism=Clytia hemisphaerica|type=polypeptide|length=412bp MATEEERKFLQFAKTGDFDELKNLLSVVDVNHKGEEGMTALMYAAYKGSVRun BLAST on NCBI transcript from alignment at sc0000052:814059..822946- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005377 ID=TCONS_00005377|Name=TCONS_00005377|organism=Clytia hemisphaerica|type=transcript|length=8888bp|location=Sequence derived from alignment at sc0000052:814059..822946- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000052:814059..822946- >TCONS_00005377 ID=TCONS_00005377|Name=TCONS_00005377|organism=Clytia hemisphaerica|type=CDS|length=14868bp|location=Sequence derived from alignment at sc0000052:814059..822946- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00005377 vs. Swiss-Prot (Human)
Match: ANKY2 (Ankyrin repeat and MYND domain-containing protein 2 OS=Homo sapiens GN=ANKMY2 PE=1 SV=1) HSP 1 Score: 281.567 bits (719), Expect = 2.696e-85 Identity = 155/357 (43.42%), Postives = 228/357 (63.87%), Query Frame = 3
Query: 120 TEEERKFLQFAKTGDFDELKNLLSV--VDVNHKGEEGMTALMYAAYKGSVNSVELLLHNGADPNIDSTKDKYTPLMFATLSGSTDTVRTLLQAGAKPDAVNTIKRTAAQLGAFVGRHDCVSVINNFVQTDQIKYYTKTHGFEKTAKLDDKLAENVHKMVVIPNLNPVKLVLYIQDHIELI--PASKEVLYVLETEVEKSFK--DVNEVLSIKLHIFSHVFKKCVAWETGKEXXXXXXXXXXXXXXXRPADGFLLNIEFLLRDSMRSFPYAQSNLFKQIIKSLSSTELGKPPSAITILTQSINGMQSADFSECCTCCGDRHCFNKCSACKMVRYCNAACQKLHWSSHKPFCADLKVKY 1172
T+EE++ L+ G E LLS V VN E GMT LM+AAYKG ++ +LLL +GAD N + YT LMFA LSG+ D +L+AGA+ D VN++ RTAAQ+ AFVG+HDCV++INNF +++ YYTK G +K KL KLA +HK++ NL+PVK+V+ + ++ L A + V++ EK K D+NEVL++K+H S +F+KC+ + K+G+ + L+K LLKGR +DGF + E ++R+S+R FPY ++ L +Q+++S++ E+G P+A ++LTQ+I G E CT CG++ +CS CKMV YC+ CQK HW +HK C +LK Y
Sbjct: 10 TQEEKELLEVIGKGTVQEAGTLLSSKNVRVNCLDENGMTPLMHAAYKGKLDMCKLLLRHGADVNCHQHEHGYTALMFAALSGNKDITWVMLEAGAETDVVNSVGRTAAQMAAFVGQHDCVTIINNFFPRERLDYYTKPQGLDKEPKLPPKLAGPLHKIITTTNLHPVKIVMLVNENPLLTEEAALNKCYRVMDLICEKCMKQRDMNEVLAMKMHYISCIFQKCINFL--KDGENKLDTLIKSLLKGRASDGFPVYQEKIIRESIRKFPYCEATLLQQLVRSIAPVEIGSDPTAFSVLTQAITGQVGFVDVEFCTTCGEKGASKRCSVCKMVIYCDQTCQKTHWFTHKKICKNLKDIY 364 The following BLAST results are available for this feature:
BLAST of TCONS_00005377 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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