TCONS_00005374 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005374
Unique NameTCONS_00005374
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length741

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005374 ID=TCONS_00005374|Name=TCONS_00005374|organism=Clytia hemisphaerica|type=transcript|length=741bp
TGCCAACCGTGGTTTAGGTTTGGAATTTGTGAAGAAGTTGGCGAGCAGAG
TTGATATTTTATTTGCTGGATGTCGTAAACCTTCTGAAGCTTAAgaattG
AATGAGCTTAAAAACTTTCACCACAATGTTCATATATTAGAGCTAGATGT
CACTTGTGAGAAAAGTATCCAAGCTTGCATTGAAGAAGTCTCCAAAGTTT
GCGGTGAAGTCGGATTGAGTTGTTTGATCAACAATGCAGGAGCAATAAAG
AAGCCGGATAACAAAGTTACTGAACTATCATTGGATGATCTCAAACGTAT
TTTTAGTGTTAACACCTTTGGCCCGTCAATAGTTTGTAAGCACTCGCTAA
ATTTACTCCAACAAGCTACCAAAACACATTCAGATCAAATCATCACAAAG
CCTTTAATCGTTAACATTGGGTCAGACTTATCATCAGTCAGCATTATGGA
CCGCAATATGGGCTTCTACTATTCTTATAATATGTCCAAGAGCTCTTTGA
ACATGTTTACCAAAATGTTATCGCTGGAGATCGAACAAGACGGTATTGAT
GTCATTGCTATCCACCCTGGGTGGGTACAAACAGATATGGGCGGTGCAAA
TGGCACCCTCACTGTTCAGCAATNGATTGACATGATGTTAGAGACGTTAT
CCACCCTCAGACAAGATCAAAATGGAACCTTGATCGATTTCAAAGGAGAA
ACCATCCCATATTGAGTTAGAATCAAACCACTCGAACATGC
Run BLAST on NCBI

transcript from alignment at sc0000052:759553..765553-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005374 ID=TCONS_00005374|Name=TCONS_00005374|organism=Clytia hemisphaerica|type=transcript|length=6001bp|location=Sequence derived from alignment at sc0000052:759553..765553- (Clytia hemisphaerica)
TGCCAACCGTGGTTTAGGTTTGGAATTTGTGAAGAAGTTGGCGAGCAGAG
TTGATATTTTATTTGCTGGATGTCGTAAACCTTCTGAAGCTTAAGTATAC
TCTTATATTGATTACATTTTTCTCCGAAGATATTTTTGAAGCAATTTCTT
TTTCCATGGTTCTCTACTTAGGATAGTTTGTAGAAGACAATTTGGTTGGC
AAACAATATTATCCTCTAGAGGATGCATGATCTCTCATTTTCGCTGCTAT
TTTCTACTTTCCTGTCTTCTATTCTGATTTTCTGACTTTCTCAAGTGTTC
TTAACTGTTTTTACATATTTTTTCTAAAGTTCGCTTGAACCACCAAATGC
AACCAAAGCAACCTTTGGTTTGCAAACCCAATGCCTAACCTCTTACGTTA
CTGAGACACAGCAGAATACTGTCATTCATAAATACTGTCAACTGCTCTAA
CTTGGGACGGTTGGTCGACTGGGACATGGGACTGTTTGATATCTGGCCTG
TATTTTTTCACTTACTATTAAATCTCTTTGACCACAAATTTGTTTTGATA
ATTCCACCAAGTTTATCAATCATACTTTCTGTCATACTGTAACATGTCAC
AATATCTTCCACTACGGAATAACTTTCATATTTCGATTTAAAAGCCTACT
CGCTGCGAAAGAGAAATTGTGTATTTTTTAATATGCCTTTCATTAACTCA
AATCAAATGACTTTGGAGGTTTGGTGAAATGGTGGCCAAATTGTCGTCCC
ATGTTTTGTCAGATAGTCCCAAGTTAGAGCAGTTGACGGTACTTATAGCG
TTAAATTACATACCTTAATTGAAATAGCTCCCAACCCTACTTGTGCCCCT
ACAAGGATCTCTACAGCACCCTAACTTAATTCAGAGTGTATGAGTGCCCC
TAAGAAGGCCTTTGGCCTTATATTGTGACTCACAAGCTCTAACCCTAACC
CTAACTGATAATAACTGAACCCTGTCTAGGTACGCAGACTGAAAAATTCG
ACTTGCATCCTGGAGGATGATATTGTTTCCCAACCCAATCAAGCAGTCAT
TCATTTAATAAAAGAAATCGTCAGCTTATATAAAAAATTTGACAAGAGTA
TTTTATTTTTAGGAATTGAATGAGCTTAAAAACTTTCACCACAATGTTCA
TATATTAGAGCTAGGTAAATTTCATCCACTCTTTTAATAAATATTCCGTT
TTCATGAAACTCTGAGTTTGAAACAAAGATATTGTGTCAACTCTTTATTA
TAATAACGCTCTATTTACTGATTGAGCACTCTACGAGGAGAAGATATACA
CCCTCTACAGTTTTCATATTTGTTAAATATCTTATGGACTTGGCTAATTT
TTATTTGGAAGATTTTTAACCAGGTCTGTCTTCATTGTCTATCTTTTGTC
AGATGTCACTTGTGAGAAAAGTATCCAAGCTTGCATTGAAGAAGTCTCCA
AAGTTTGCGGTGAAGTCGGATTGAGTTGTTTGATCAACAATGCAGGAGCA
ATAAAGAAGCCGGATAACAAAGTTACTGAACTATCATTGGATGATCTCAA
ACGTATTTTTAGTGTTAACACCTTTGGCCCGTCAATAGTTTGTAAGGTAG
AATAAATAGATCTTAGCAACACGTCCTTTAATTTGATATTAAATTTTTCC
TGGCACTTGTACCTCTAGATCAAAAATATGTGTCAAACATTATTAGTTGA
TATATATGGTCTATTTGTATTTGTTCTTTTTTGTGCTGATTTATGCAAAT
TATCTCCACTTGATTTCGTTTTCCTGACTTTCAATTAATTGATAGTCTAA
AGAAGTGTTTTCTTATAGCATGCACTCGTTATGCTCCAACAGGCAGCTAT
GAAAACATCTAGTGATTACATCATCTCAAAGCCACTAATCATAAATATTG
GAACCATTTTATCTTCGATTGGGAGTGTGGAACGATTTGGACTCTCCCAT
TACAGCTACAAAATGTCAAAGGTACCCTACTGTGTTATTTCTTTAGCTAT
AGGCTTAACCAACCTAGCTCTCTGCTTTTAAATTGTTCAAACTAGCATAG
GAAAGATCTTTCTGCCAACAGCCTGGCCTCTTGTCTGGAGAAAAATGACA
TTGGAAACTATTCTATTTTAACTGTATTTGATTGCTTTTAGAGTTCATTG
AATATGTTTACAAAAATGTTGTCTTTGGAGCTCAAACAGGATGACATCGG
TGTTATTTGCATCAACCCTGGTTGGGTTCAAACAGAGCTTGGAGGTTGGA
ATGCCACTTTGACAGTTGAGCAGTCAGTTGATCAGATGTTAAAAACTTTA
TCAATTTTGAAGCCTGACCAAATGGGATCACTCATAGATATTGATGGAAG
TATTATTCCTTATTGATATTCCCTTTGGAAAAGCTAATTCATATTCCTGA
TATATTGTCAATCAAAATTGTCTTCAATTAACCTGAATCTAGCAAGAACT
AATTTTGGCAATCAGAAAAAATCCTAAAAAAGATTTTTCAAAGATTCAGC
AAGAGACTCATTTTGCTGAGTCAGCAATTTTTTTAGTTTTAACAAAACTA
TTTTTAGCGAATAGTTATATTTTTGTTGTCTCAGAACAAGTGTTTTGTGG
ATTCGGGGCTGTTCCAGGAAGTGATAGAAAGTTTTGGCATGTAACTTTTT
GTGGCAGAGCAGCAAATTTTCAAATCTTTTATTAGTTTTGGTATCACAAA
CTAGAATAATAAAGCCCAAATAATTTTTATGCTTTCATTTATAATACATA
CATCTTCATCAGATTTTTTTACCATACAATATTTTGAAATATAAGAATTT
TTATAAACAATATGAATAATATTATGATGGTAGAGAGTTTTGTATATTTT
TATGCACACATTGTATAAATCTCACATATATAATTTGGATTTTTATTATT
TTTAATGATTTTCTCTGATTCTCTTCAGTTTCTTTCTAGTTCTTCACTTT
ACCTGCATCTATTCTTCATTTATCATGTTTACAGAAAAATAAGAAAATAT
GTCACAAAAATTTGCGAAAAACCTTCTTATAACAGGTGCCAACCGTGGTA
TTGGTTTGGAATTTGTGAAGAAGTTGGCGAGCAGAGTTGATATTTTATTT
GCTGGATGTCGCAAACCTTCTGAAGCTAAGGTATGAATTTATTTTTCAGT
GCAAGAAAAGATCTTTATACTCTATATACTAACAGCAACGGACTAGCAGT
ACTTTCTCCTCATAGTTCGCCAACAATCGCTGTCTTACCTTTCAATACGC
CTACATTACAGTATATTTCTTTAACTATCAACTGAGCTTTTCTGAGACAA
AGCATTTAGATTGAGTCAACTCATCTTCAGTTTAAGACTTCAAAGAGAAC
ATTAGTTTTTTGTAGCCTGGAAAGAGAAAAGGTTAGTATGTAATTGGAAG
TGTCACTAATGTTGCATGCCTGTCTATGTAGAGGCTTTGTAGCTGTGTAT
AAGGCTTTGAGGTTATAGCAAAATTTATAATGATTCTTATATTCCTAATT
TGCATAGTTGATTCATTTTTCAGGAACTGAATGCTTTGAAGGATGTGCAC
AACAACATCCATGTGGTGGAAATAGGTTGGTGAAATCTGAAAATTCAGCC
GGGAAAATCCGAATATCTGGGAGGGGAAAACAGTAAATTCAATTAGAAAG
AACTGAAAGCTCGGTTTGGATCTGAAAACTCAATTGGAAAACCCAAAAAC
TCAATTGGAAAACCTGAAAACATGGTTTGTAATTATTTACAGTTTGACAC
ACTCTTTTTGTTAAAGTATTTTCATACTTCTCTTACATCCACTCTGACCA
GGTTATCTGAAAACCCAGCACTGCTGTTAACGAAATATAATAAATACCAT
TTGGTCAAAAAGGTACAACCTATCAAACAATTGCAACAATGTTTATTTAT
TCAGACAATGTAGTGGCTGAACAATGGACTAACTGTCTTTCTTCTCCGTT
TCAGATGTCACATGCGAAAAAAACATCCAAGCTTGCATCGAAGAAGTCTC
CAAAGTTTGTNACCCTTCTTCTCCGTTTCAGATGTCACATGCGAAAAAAA
CATCCAAGCTTGCATCGAAGAAGTCTCCAAAGTTTGTGGTGAAGCCGGAT
TGAGTTGCTTGATCAACAATGCGGGAGCATTAATTAAACCTGATGACAAA
GTCACTGAACTGACATTGGAAAAATTTAATCATATTTTTAGTGTTAATAT
CTTTGGCCCCTCAATAGTTTGTAAGGTAAAAGGTGTTTGGAAATCTCTTT
TCTGTTTAGTATTTTTGTCAATTCAGAGCTTTCCTTCTTATGACGACTAA
CAGTAAGAGAAAGTTTNGTTTAGTATTTTTGTTAATTCAGAGCTTTCCTT
CTTATGACGACTAACAGTAAGAGAAAGTTTCATTCGATTTTGAATCTTTT
TGGTAATTCAAAGAGAGCACCTGGCCTCCTGGACTGTAAAATTTACAATG
ATCAGATGAACTATGAAACTGTGGGAGTATCCGATCCTAATTCCAACTGA
ACTTTCTCCCATTTCAGCACTCGCTAAATTTACTCCAACAAGCTACCAAA
ACACATTCAGATCAAATCATCACAAAGCCTTTAATCGTTAACATTGGGTC
AGACTTATCATCAGTCAGCATTATGGACCGCAATATGGGCTTCTACTATT
CTTATAATATGTCCAAGGTATTGAGATAATTATATCACACTAACAATCAG
TTCTCGACTCGCCTGTAGTTTAGCCATTTCTGGATACCGTTCTGTTGAAT
GGGGTTGTATTAATTGATACGACATTACTGTATCACAAAAGAGAATATCA
AGTTTAGGAAAGCTCTACCTTTTAAGGGAATGAATTAATCAATTAATGCG
AATATGGTCTTTTTTCGCAAACGTAAATTTCGCAAAAACTTGAAAATTAC
GGTTGTTTGCATTAATAAGTTCCGCATTTTTTTTCTAAATTTTTCTGATT
TATGAGGTGTAAACCCTAAATATCGTTTTCTGGGCTCCAGGGCATAAATA
AAGCACTTGTATATTTGACATTATTCTGATACTCAATAAGTGCCTAAACC
AGATGTTACCTTAAGAGAAGAAATTTTGGTGGGAAGGGGCCCATTTTAGT
GCAATTTGGCAGAATTTATTTTGGCGAATTGATTAAAATCTCTAAATTTG
GCAAGGATTAATTTTGGCGAACGACACGTTATTTGTTAAAAATTTTTAGC
TGAGAATCGAGAAGGACAGGCGATTTTAGGGAAAATGGAGACTTAAGTGA
AAGAAATTTAATCTAATTTAATTTTGGAATTTTGGTGAATTTGGCAAGAT
TTTTAAATTTCTTCCCTTAAAGGTAGAATGCAATAAAGAAAGACATAAAG
CAATAAAGAAAACAAGATTCTTAAAATCAATAGTTCCTCATTATTATAAT
CATACCAAATTATTTCATTGGAAATTTTTTTGGTTTGTTCTGCTTCTTGA
AAAGGAAAAAACCTTTTCAAACGCTATTTCACATAATTCCGTAAAATCTA
TAAAATGGGCCTATTCGCATTATAATTTTTTCTCCAAAACATAAAACTAA
TATTCCTGAGAAATCTTGCAGCGAAACAATGATAATGTAACCTTCAGAAA
GCTCCTTAACTTTTCTATGTTTTAAATTTGTCTAACTTTTTAGAGCTCTT
TGAACATGTTTACCAAAATGTTATCGCTGGAGATCGAACAAGACGGTATT
GATGTCATTGCTATCCACCCTGGGTGGGTACAAACAGATATGGGCGGTGC
AAATGGCACCCTCACTGTTCAGCAATCAATTGCCATGATGTTAGATACGT
TATCCAACCTCAGACAAGATCAAAATGGAACCTTAATCAATTTCAAAGGA
GAAAACATCCCATATTGAGAGAGACTTGAACATNGATTGACATGATGTTA
GAGACGTTATCCACCCTCAGACAAGATCAAAATGGAACCTTGATCGATTT
CAAAGGAGAAACCATCCCATATTGAGTTAGAATCAAACCACTCGAACATG
C
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003049XLOC_003049Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005374-exon-sc0000052-1575043694:765460..765553TCONS_00005374-exon-sc0000052-1575043694:765460..765553Clytia hemisphaericaexon
TCONS_00005374-exon-sc0000052-1575043694:764390..764441TCONS_00005374-exon-sc0000052-1575043694:764390..764441Clytia hemisphaericaexon
TCONS_00005374-exon-sc0000052-1575043694:763958..764151TCONS_00005374-exon-sc0000052-1575043694:763958..764151Clytia hemisphaericaexon
TCONS_00005374-exon-sc0000052-1575043694:760887..761036TCONS_00005374-exon-sc0000052-1575043694:760887..761036Clytia hemisphaericaexon
TCONS_00005374-exon-sc0000052-1575043694:759780..759910TCONS_00005374-exon-sc0000052-1575043694:759780..759910Clytia hemisphaericaexon
TCONS_00005374-exon-sc0000052-1575043694:759553..759672TCONS_00005374-exon-sc0000052-1575043694:759553..759672Clytia hemisphaericaexon
TCONS_00005374-exon-sc0000052-1510915933:765460..765553TCONS_00005374-exon-sc0000052-1510915933:765460..765553Clytia hemisphaericaexon
TCONS_00005374-exon-sc0000052-1510915933:764390..764441TCONS_00005374-exon-sc0000052-1510915933:764390..764441Clytia hemisphaericaexon
TCONS_00005374-exon-sc0000052-1510915933:763958..764151TCONS_00005374-exon-sc0000052-1510915933:763958..764151Clytia hemisphaericaexon
TCONS_00005374-exon-sc0000052-1510915933:760887..761036TCONS_00005374-exon-sc0000052-1510915933:760887..761036Clytia hemisphaericaexon
TCONS_00005374-exon-sc0000052-1510915933:759780..759910TCONS_00005374-exon-sc0000052-1510915933:759780..759910Clytia hemisphaericaexon
TCONS_00005374-exon-sc0000052-1510915933:759553..759672TCONS_00005374-exon-sc0000052-1510915933:759553..759672Clytia hemisphaericaexon
TCONS_00005374-exon-sc0000052-1491911889:765460..765553TCONS_00005374-exon-sc0000052-1491911889:765460..765553Clytia hemisphaericaexon
TCONS_00005374-exon-sc0000052-1491911889:764390..764441TCONS_00005374-exon-sc0000052-1491911889:764390..764441Clytia hemisphaericaexon
TCONS_00005374-exon-sc0000052-1491911889:763958..764151TCONS_00005374-exon-sc0000052-1491911889:763958..764151Clytia hemisphaericaexon
TCONS_00005374-exon-sc0000052-1491911889:760887..761036TCONS_00005374-exon-sc0000052-1491911889:760887..761036Clytia hemisphaericaexon
TCONS_00005374-exon-sc0000052-1491911889:759780..759910TCONS_00005374-exon-sc0000052-1491911889:759780..759910Clytia hemisphaericaexon
TCONS_00005374-exon-sc0000052-1491911889:759553..759672TCONS_00005374-exon-sc0000052-1491911889:759553..759672Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000052supercontigsc0000052:759553..765553 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.7405	11.2189	16.2937	12.2594	7.68062	4.35788	4.85535	5.40188	0	0.781178	0.73679	0	2.05757	0	1.63674	2.74014	1.39044	0	0	0	3.10954	1.77259	8.32503	7.46072	1.7638	0	3.46545	2.03832	5.27278	7.07697
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005374 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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