TCONS_00005370 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005370
Unique NameTCONS_00005370
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3545

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005370 ID=TCONS_00005370|Name=TCONS_00005370|organism=Clytia hemisphaerica|type=transcript|length=3545bp
TTAGGTTTGGAATTTGTGAAGAAGTTGGCGAGCAGAGTTGATATTTTATT
TGCTGGATGTCGTAAACCTTCTGAAGCTTAAATGTCACTTGTGAGAAAAG
TATCCAAGCTTGCATTGAAGAAGTCTCCAAAGTTTGCGGTGAAGTCGGAT
TGAGTTGTTTGATCAACAATGCAGGAGCAATAAAGAAGCCGGATAACAAA
GTTACTGAACTATCATTGGATGATCTCAAACGTATTTTTAGTGTTAACAC
CTTTGGCCCGTCAATAGTTTGTAAGCATGCACTCGTTATGCTCCAACAGG
CAGCTATGAAAACATCTAGTGATTACATCATCTCAAAGCCACTAATCATA
AATATTGGAACCATTTTATCTTCGATTGGGAGTGTGGAACGATTTGGACT
CTCCCATTACAGCTACAAAATGTCAAAGAGTTCATTGAatatgtttacaa
aaatgttgTCTTTGGAGCTCAAACAGGATGACATCGGTGTTATTTGCATC
AACCCTGGTTGGGTTCAAACAGAGCTTGGAGGTTGGAATGCCACTTTGAC
AGTTGAGCAGTCAGTTGATCAGATGTTAAAAACTTTATCAATTTTGAAGC
CTGACCAAATGGGATCACTCATAGATATTGATGGAAGTATTATTCCTTAT
TGATATTCCCTTTGGAAAAGCTAATTCATATTCCTGATATATTGTCAATC
AAAATTGTCTTCAATTAACCTGAATCTagcaagaactaattttggcaatc
agaaaaaatcctaaaaaagatttttcaaagattcagCAAGAGACTcattt
tgctgagtcagcaatttttttagttttaacaaAACTATTTTTAGCGAATA
GTTATATTTTTGTTGTCTCAGAACAAGTGTTTTGTGGATTCGGGGCTGTT
CCAGGAAGTGATAGAAAGTTTTGGCATGTAACTTTTTGTGGCAgagcagc
aaattttcaaatcttttattaGTTTTGGTATCACAAACTAGAATAATAAA
GCCCAAATAATTTTTATGCTTTCATTTATAATACATACATCTTCATCAGA
TTTTTTTACCatacaatattttgaaatataagaaTTTTTATAAACAATAT
GAATAATATTATGATGGTAGAgagttttgtatatttttatgcaCACATTG
TATAAATCTCACATATATAATTtggatttttattatttttaatgattttc
tctGATTCTCTTCAGTTTCTTTCTAGTTCTTCACTTTACCTGCATCTATT
CTTCATTTATCATGTTTacagaaaaataagaaaatatgtcacaaaaattt
gcgaaaaaccTTCTTATAACAGGTGCCAACCGTGGTATTGGTTTGGAATT
TGTGAAGAAGTTGGCGAGCAGAGTTGATATTTTATTTGCTGGATGTCGCA
AACCTTCTGAAGCTAAGGAACTGAATGCTTTGAAGGATGCGCACAACAAC
CTTCATGTAGTGGAAATAGATGTCACTTGCGAAAAAAACATCCAAGCTTG
CATTGAAGAAGTCTCTAAAGTTTGCGGTGAAGCCGGATTGAGTTGTTTGA
TTAACAATGCAGGAGCTAACAAGAAGCCGGATAACAAAGTTACCGAACTA
TCATTGGATGACCTCAAACGTATTTTTAGTGTCAACACTTTTGGTCCTCC
CATAGTGTGTAAGCATTCCCTATCATTGCTTCAACAAGCTGCCAAAACAC
ATTCAGATCAAATCATCACAAAGCCTCTTATCGTTAACATTGGGACTGGT
TTATCGTCTGTCAGCAGAATGAATCGCGATATGAGTTGCTATTATTCCTA
TAATATGTCCAAGAGCCCTTTGAACATGTTTACCAAAATGTTATCGCTGG
AAATCGAAGAAGACGGTATTGATGTCATTGCTATCCACCCTGGGTGGGTA
CAAACAGATATGGGCGGTTCAAATGCCACCCTCACTGTTCAACAATCAAT
TGACATGATGTTAGAGACGTTATCCAATCTCAGACAAGAACAAAATGGAA
CCTTAATCAATTTCAAAGGAGAAACAATCCCATATTGAGAGAGACTTGGT
TAAATGGATTATTTTATTGGGATGAGAGGAGAGAGACTCCAGAGACGAGA
ggtcaaaattgcaaaaaaatttgtatcTTATTTAAAATAGAATGAAGTTT
AGAGTGACTTCGTCTATTAGAGTAACAAGTGAAATAATATCAAGCTGATC
AGGGTAGAGACATGTAAGCTGTCAGTTAGGTAAACCACTAGAACGTTCAT
TATAATAAATCTTCctaatatatttttaatttgagATAAATTTTTGTATG
ATAATGTAAAGaagaatgtttttgaaagttttacgAGTTTTTATGGATTC
TACCAACCGAAATTGTGTGAAAGAGcagattttaatgattttaaggCGAT
TATTTTAACATGACCTAAAGATGATGGTTAAGATGACCTTTTGGTTCGAT
TCTCCATGTTTATAATGTTTGTATGTATTTTTCAGGTAACagtaaaaata
tcaaagaaataaaaacatcaatgaACATGACGGCcaatgaattttcattt
tcttgtgATCCAAACTTCTGCAGTGTTTGTGGTTCAATCCTCCCTCTCCC
CGTCACTGGTTCAGATGTCCTCTCCTGCAAGTTATGCTCAACTTCCATCA
GTGTAGATTCTCTTGAAGGTATCGTCATCCATTCGTTCAAGAAGTTTAAT
CAACACAAACTCAAATCATCTGATGAGATGGAACGAATGAAAGAAATGGA
AGAGAGTGCGACCAACCATGGACCTGTGGTCAAACGAGAATGTTCGAAAT
GTCATCATAAGAAAATGACATATACGACGCGTCAAACGAGGTCGGCCGAT
GAGGGCCAGACAGTCTTTTTCACATGCTTGAAATGCAATTTCACCGAGAC
CGAATATTCATAATGATTCTAATCGATATTTTTCTGCTGGaaatttgata
ataattttaGCTGGAGAAGGTAACAGTTTCTTGTACTTTTTGGAAATTGG
TTGTACTTGCGTGAGTTATTGATATGCTGAAATTGTATCTTACATTGGTA
TTATTAGATCGATGGAAGACAAAATACTTAGTTCCATTGTCATTGCATCA
TAGCTAGATGGTTATGCACTACGAATATCTTTTTGGAACAAGATGTTTAT
AATTCAATGtcaattgattttaaaagcTCTTAAGCTTCTTACATCTCATT
CAAACACACTGATGATAACTGTATCATACAGCTATATAATCTATTTCCGA
TTACGTAATTACAATGATTTTTCCTCACAGTTTTTTATTCCGTATGATTA
TTTATGGTCTTTGGAAGAGATGATATCTACACATTTGTAATATATATTTG
AGCAACTCTTGTTATGACTTGTTGTATGTCGTTAAGAAGGTCTTAGTTCT
ATACATTATTATCTATATATGCAAGATTTGAAATGAATTGGTATTCACAA
TATCTAAACATTTCCAATCATATATATTTAGTCTTATACTTCTCTTTCAA
TACCAATTTGTTATGTCGTTGGAAAGGTCTTAATTCTATACATTA
Run BLAST on NCBI

transcript from alignment at sc0000052:755467..765540-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005370 ID=TCONS_00005370|Name=TCONS_00005370|organism=Clytia hemisphaerica|type=transcript|length=10074bp|location=Sequence derived from alignment at sc0000052:755467..765540- (Clytia hemisphaerica)
TTAGGTTTGGAATTTGTGAAGAAGTTGGCGAGCAGAGTTGATATTTTATT
TGCTGGATGTCGTAAACCTTCTGAAGCTTAAGTATACTCTTATATTGATT
ACATTTTTCTCCGAAGATATTTTTGAAGCAATTTCTTTTTCCATGGTTCT
CTACTTAGGATAGTTTGTAGAAGACAATTTGGTTGGCAAACAATATTATC
CTCTAGAGGATGCATGATCTCTCATTTTCGCTGCTATTTTCTACTTTCCT
GTCTTCTATTCTGATTTTCTGACTTTCTCAAGTGTTCTTAACTGTTTTTA
CATATTTTTTCTAAAGTTCGCTTGAACCACCAAATGCAACCAAAGCAACC
TTTGGTTTGCAAACCCAATGCCTAACCTCTTACGTTACTGAGACACAGCA
GAATACTGTCATTCATAAATACTGTCAACTGCTCTAACTTGGGACGGTTG
GTCGACTGGGACATGGGACTGTTTGATATCTGGCCTGTATTTTTTCACTT
ACTATTAAATCTCTTTGACCACAAATTTGTTTTGATAATTCCACCAAGTT
TATCAATCATACTTTCTGTCATACTGTAACATGTCACAATATCTTCCACT
ACGGAATAACTTTCATATTTCGATTTAAAAGCCTACTCGCTGCGAAAGAG
AAATTGTGTATTTTTTAATATGCCTTTCATTAACTCAAATCAAATGACTT
TGGAGGTTTGGTGAAATGGTGGCCAAATTGTCGTCCCATGTTTTGTCAGA
TAGTCCCAAGTTAGAGCAGTTGACGGTACTTATAGCGTTAAATTACATAC
CTTAATTGAAATAGCTCCCAACCCTACTTGTGCCCCTACAAGGATCTCTA
CAGCACCCTAACTTAATTCAGAGTGTATGAGTGCCCCTAAGAAGGCCTTT
GGCCTTATATTGTGACTCACAAGCTCTAACCCTAACCCTAACTGATAATA
ACTGAACCCTGTCTAGGTACGCAGACTGAAAAATTCGACTTGCATCCTGG
AGGATGATATTGTTTCCCAACCCAATCAAGCAGTCATTCATTTAATAAAA
GAAATCGTCAGCTTATATAAAAAATTTGACAAGAGTATTTTATTTTTAGG
AATTGAATGAGCTTAAAAACTTTCACCACAATGTTCATATATTAGAGCTA
GGTAAATTTCATCCACTCTTTTAATAAATATTCCGTTTTCATGAAACTCT
GAGTTTGAAACAAAGATATTGTGTCAACTCTTTATTATAATAACGCTCTA
TTTACTGATTGAGCACTCTACGAGGAGAAGATATACACCCTCTACAGTTT
TCATATTTGTTAAATATCTTATGGACTTGGCTAATTTTTATTTGGAAGAT
TTTTAACCAGGTCTGTCTTCATTGTCTATCTTTTGTCAGATGTCACTTGT
GAGAAAAGTATCCAAGCTTGCATTGAAGAAGTCTCCAAAGTTTGCGGTGA
AGTCGGATTGAGTTGTTTGATCAACAATGCAGGAGCAATAAAGAAGCCGG
ATAACAAAGTTACTGAACTATCATTGGATGATCTCAAACGTATTTTTAGT
GTTAACACCTTTGGCCCGTCAATAGTTTGTAAGGTAGAATAAATAGATCT
TAGCAACACGTCCTTTAATTTGATATTAAATTTTTCCTGGCACTTGTACC
TCTAGATCAAAAATATGTGTCAAACATTATTAGTTGATATATATGGTCTA
TTTGTATTTGTTCTTTTTTGTGCTGATTTATGCAAATTATCTCCACTTGA
TTTCGTTTTCCTGACTTTCAATTAATTGATAGTCTAAAGAAGTGTTTTCT
TATAGCATGCACTCGTTATGCTCCAACAGGCAGCTATGAAAACATCTAGT
GATTACATCATCTCAAAGCCACTAATCATAAATATTGGAACCATTTTATC
TTCGATTGGGAGTGTGGAACGATTTGGACTCTCCCATTACAGCTACAAAA
TGTCAAAGGTACCCTACTGTGTTATTTCTTTAGCTATAGGCTTAACCAAC
CTAGCTCTCTGCTTTTAAATTGTTCAAACTAGCATAGGAAAGATCTTTCT
GCCAACAGCCTGGCCTCTTGTCTGGAGAAAAATGACATTGGAAACTATTC
TATTTTAACTGTATTTGATTGCTTTTAGAGTTCATTGAATATGTTTACAA
AAATGTTGTCTTTGGAGCTCAAACAGGATGACATCGGTGTTATTTGCATC
AACCCTGGTTGGGTTCAAACAGAGCTTGGAGGTTGGAATGCCACTTTGAC
AGTTGAGCAGTCAGTTGATCAGATGTTAAAAACTTTATCAATTTTGAAGC
CTGACCAAATGGGATCACTCATAGATATTGATGGAAGTATTATTCCTTAT
TGATATTCCCTTTGGAAAAGCTAATTCATATTCCTGATATATTGTCAATC
AAAATTGTCTTCAATTAACCTGAATCTAGCAAGAACTAATTTTGGCAATC
AGAAAAAATCCTAAAAAAGATTTTTCAAAGATTCAGCAAGAGACTCATTT
TGCTGAGTCAGCAATTTTTTTAGTTTTAACAAAACTATTTTTAGCGAATA
GTTATATTTTTGTTGTCTCAGAACAAGTGTTTTGTGGATTCGGGGCTGTT
CCAGGAAGTGATAGAAAGTTTTGGCATGTAACTTTTTGTGGCAGAGCAGC
AAATTTTCAAATCTTTTATTAGTTTTGGTATCACAAACTAGAATAATAAA
GCCCAAATAATTTTTATGCTTTCATTTATAATACATACATCTTCATCAGA
TTTTTTTACCATACAATATTTTGAAATATAAGAATTTTTATAAACAATAT
GAATAATATTATGATGGTAGAGAGTTTTGTATATTTTTATGCACACATTG
TATAAATCTCACATATATAATTTGGATTTTTATTATTTTTAATGATTTTC
TCTGATTCTCTTCAGTTTCTTTCTAGTTCTTCACTTTACCTGCATCTATT
CTTCATTTATCATGTTTACAGAAAAATAAGAAAATATGTCACAAAAATTT
GCGAAAAACCTTCTTATAACAGGTGCCAACCGTGGTATTGGTTTGGAATT
TGTGAAGAAGTTGGCGAGCAGAGTTGATATTTTATTTGCTGGATGTCGCA
AACCTTCTGAAGCTAAGGTATGAATTTATTTTTCAGTGCAAGAAAAGATC
TTTATACTCTATATACTAACAGCAACGGACTAGCAGTACTTTCTCCTCAT
AGTTCGCCAACAATCGCTGTCTTACCTTTCAATACGCCTACATTACAGTA
TATTTCTTTAACTATCAACTGAGCTTTTCTGAGACAAAGCATTTAGATTG
AGTCAACTCATCTTCAGTTTAAGACTTCAAAGAGAACATTAGTTTTTTGT
AGCCTGGAAAGAGAAAAGGTTAGTATGTAATTGGAAGTGTCACTAATGTT
GCATGCCTGTCTATGTAGAGGCTTTGTAGCTGTGTATAAGGCTTTGAGGT
TATAGCAAAATTTATAATGATTCTTATATTCCTAATTTGCATAGTTGATT
CATTTTTCAGGAACTGAATGCTTTGAAGGATGTGCACAACAACATCCATG
TGGTGGAAATAGGTTGGTGAAATCTGAAAATTCAGCCGGGAAAATCCGAA
TATCTGGGAGGGGAAAACAGTAAATTCAATTAGAAAGAACTGAAAGCTCG
GTTTGGATCTGAAAACTCAATTGGAAAACCCAAAAACTCAATTGGAAAAC
CTGAAAACATGGTTTGTAATTATTTACAGTTTGACACACTCTTTTTGTTA
AAGTATTTTCATACTTCTCTTACATCCACTCTGACCAGGTTATCTGAAAA
CCCAGCACTGCTGTTAACGAAATATAATAAATACCATTTGGTCAAAAAGG
TACAACCTATCAAACAATTGCAACAATGTTTATTTATTCAGACAATGTAG
TGGCTGAACAATGGACTAACTGTCTTTCTTCTCCGTTTCAGATGTCACAT
GCGAAAAAAACATCCAAGCTTGCATCGAAGAAGTCTCCAAAGTTTGTNAC
CCTTCTTCTCCGTTTCAGATGTCACATGCGAAAAAAACATCCAAGCTTGC
ATCGAAGAAGTCTCCAAAGTTTGTGGTGAAGCCGGATTGAGTTGCTTGAT
CAACAATGCGGGAGCATTAATTAAACCTGATGACAAAGTCACTGAACTGA
CATTGGAAAAATTTAATCATATTTTTAGTGTTAATATCTTTGGCCCCTCA
ATAGTTTGTAAGGTAAAAGGTGTTTGGAAATCTCTTTTCTGTTTAGTATT
TTTGTCAATTCAGAGCTTTCCTTCTTATGACGACTAACAGTAAGAGAAAG
TTTNGTTTAGTATTTTTGTTAATTCAGAGCTTTCCTTCTTATGACGACTA
ACAGTAAGAGAAAGTTTCATTCGATTTTGAATCTTTTTGGTAATTCAAAG
AGAGCACCTGGCCTCCTGGACTGTAAAATTTACAATGATCAGATGAACTA
TGAAACTGTGGGAGTATCCGATCCTAATTCCAACTGAACTTTCTCCCATT
TCAGCACTCGCTAAATTTACTCCAACAAGCTACCAAAACACATTCAGATC
AAATCATCACAAAGCCTTTAATCGTTAACATTGGGTCAGACTTATCATCA
GTCAGCATTATGGACCGCAATATGGGCTTCTACTATTCTTATAATATGTC
CAAGGTATTGAGATAATTATATCACACTAACAATCAGTTCTCGACTCGCC
TGTAGTTTAGCCATTTCTGGATACCGTTCTGTTGAATGGGGTTGTATTAA
TTGATACGACATTACTGTATCACAAAAGAGAATATCAAGTTTAGGAAAGC
TCTACCTTTTAAGGGAATGAATTAATCAATTAATGCGAATATGGTCTTTT
TTCGCAAACGTAAATTTCGCAAAAACTTGAAAATTACGGTTGTTTGCATT
AATAAGTTCCGCATTTTTTTTCTAAATTTTTCTGATTTATGAGGTGTAAA
CCCTAAATATCGTTTTCTGGGCTCCAGGGCATAAATAAAGCACTTGTATA
TTTGACATTATTCTGATACTCAATAAGTGCCTAAACCAGATGTTACCTTA
AGAGAAGAAATTTTGGTGGGAAGGGGCCCATTTTAGTGCAATTTGGCAGA
ATTTATTTTGGCGAATTGATTAAAATCTCTAAATTTGGCAAGGATTAATT
TTGGCGAACGACACGTTATTTGTTAAAAATTTTTAGCTGAGAATCGAGAA
GGACAGGCGATTTTAGGGAAAATGGAGACTTAAGTGAAAGAAATTTAATC
TAATTTAATTTTGGAATTTTGGTGAATTTGGCAAGATTTTTAAATTTCTT
CCCTTAAAGGTAGAATGCAATAAAGAAAGACATAAAGCAATAAAGAAAAC
AAGATTCTTAAAATCAATAGTTCCTCATTATTATAATCATACCAAATTAT
TTCATTGGAAATTTTTTTGGTTTGTTCTGCTTCTTGAAAAGGAAAAAACC
TTTTCAAACGCTATTTCACATAATTCCGTAAAATCTATAAAATGGGCCTA
TTCGCATTATAATTTTTTCTCCAAAACATAAAACTAATATTCCTGAGAAA
TCTTGCAGCGAAACAATGATAATGTAACCTTCAGAAAGCTCCTTAACTTT
TCTATGTTTTAAATTTGTCTAACTTTTTAGAGCTCTTTGAACATGTTTAC
CAAAATGTTATCGCTGGAGATCGAACAAGACGGTATTGATGTCATTGCTA
TCCACCCTGGGTGGGTACAAACAGATATGGGCGGTGCAAATGGCACCCTC
ACTGTTCAGCAATCAATTGCCATGATGTTAGATACGTTATCCAACCTCAG
ACAAGATCAAAATGGAACCTTAATCAATTTCAAAGGAGAAAACATCCCAT
ATTGAGAGAGACTTGAACATNGATTGACATGATGTTAGAGACGTTATCCA
CCCTCAGACAAGATCAAAATGGAACCTTGATCGATTTCAAAGGAGAAACC
ATCCCATATTGAGTTAGAATCAAACCACTCGAACATGCATTAGAAATCTA
TTAAATAGATATTAATATTATTTTTAATTTAGAATAAATTATTTTTACAG
GTTACAGAAAAATAAAAAAATATGTCACAAAAATTTGCGAAAAGCCTTCT
TATAACAGGTGCCAATCGTGGTATTGGTTTGGAATTTGTGAAGAAGTTGG
CGAGCAGAGTTGATATTTTATTTGCTGGTTGTCGCAAACCTTCTGAAGCT
AAGGTATGAATTTATTTCAAAGCAAAAGAAAAGTTAGTGCAAGAGAGAGC
TATTGTAAAAGATGTAAATACTTCTCATTGTAGCTCCAATCACAATCAGC
GCATGCCAATAATAACATACTGTACTTCAGGTGTATTGAAAGATTGTAAA
TATCAGACAGGGATTGTTGGCGAACTATGAGGGAAAAGTACTGTTTGTCC
GCTGCTGCTGTACAGGCTGTGTATAGGCTTTGATGTTAAGCAAAGTTTAT
TATGATTCTTCTGATTTTGTATTGTTGATTAATTTCAGGAACTGAATGCT
TTGAAGGATGCGCACAACAACCTTCATGTAGTGGAAATAGGTTGGTGAAA
TCTCGAAGGTCAGCCGGGAAAACTATCCAGGTGGGAAAATCCGAATGGCC
GAGTGGGGAAAACATTAATTTCGATTAGTCAATTTGTAACTGGGGAGGGA
AAACAGTAAACTCGATTAGTCAATTTGTAACTGGGAAGGGTAAACTCAGC
TTGAAAATATAACATACGTTATTGTATATATGCCTCAAAAAAGATTGAAA
TATCTCTTTCGTAGATGGGATTGATGCCAGCAGGTGCCAATACTATACAA
TTTCAAACTAGTCCTGTACTATCCTGTAGCACAATTTAGTTCTATAGCCA
TTCGTGAAAATGAACCACCACGGTTTCTTTATCTACCATTCACGCTGAAT
CTGTTGGTAGCATCGGATATTTGATTTCCAGACCTCGAAAAAAACCGTTA
GTAAAGGGTCCCCTTGATAAGTTCAATCGATTCACTAAAAATCGATTTAC
TCGAAAACTGCAGGAGATTCAAAGGGCATTTTCTTTTTGTCAATTCTACA
CCCTATTAGAAGCATAATATCAAAAATTGACTAACTGATCTAAGGGGTGG
CCTACGAAGTGACACAATTCACTACCTCGGCCGATAGTCTAGTGTTCTGG
ATCAACTGCTTGACCCCCCCCCCTGACATTTTGATACATACTTTCAAAAT
GTTTATTCAATCAAATAATGTAACGCCAGAACAGTGGGCTGGGGACTAAC
AACACTTTATTTTTTTCCATTCATTTCAGATGTCACTTGCGAAAAAAACA
TCCAAGCTTGCATTGAAGAAGTCTCTAAAGTTTGCGGTGAAGCCGGATTG
AGTTGTTTGATTAACAATGCAGGAGCTAACAAGAAGCCGGATAACAAAGT
TACCGAACTATCATTGGATGACCTCAAACGTATTTTTAGTGTCAACACTT
TTGGTCCTCCCATAGTGTGTAAGGTAAAAAAGATGTTTGCGATTCTCCAA
GGTTTCTTGTCTCGCCCTCTAATTTGAGCCTCTATGATTCCTCTATTTGT
TACTCAAACTAACACATTTTTTTCTGCTCAGCTTGGAAAGTCATACTAAA
CGATTCCCTATAATTGTTTTATATTTAATTCCTTTAAAAATGTCGAATTA
CAGAGAGAGTTAATAGCGAGATTATGTATCGGAGATATTCTACGGCTACG
GTTGCGGGGCTGCCCATGCGGGTCGTCACCAAAGGCGACATGTCGTTGTC
TACTTTGCTCTGTACGGGAAATACACCAAAACACCGTATAAGCAAAGTCG
ACATAATGCCGTACGTCAAATATCGGACTTGCTTTCACCCGCCATTACTT
GCCTTACTCGCCATTTCCCTCGCCCTTCAGCCGTAGCCGTAGAGAATTCC
AGATACATAATCTCGCTAATGAAAGCTGTGTACACGAGCTTCATCGCCTG
AGCTTCCTCTCTAATCTTGATTTACTTCATGGACCTTTCAGCATTCCCTA
TCATTGCTTCAACAAGCTGCCAAAACACATTCAGATCAAATCATCACAAA
GCCTCTTATCGTTAACATTGGGACTGGTTTATCGTCTGTCAGCAGAATGA
ATCGCGATATGAGTTGCTATTATTCCTATAATATGTCCAAGGTAAAGATT
TCTTGTTACATTAGCAATTATTTCTCGACTTGCCTATAGTTGTGCCATTG
TTATAGTTTGAAAGAGTTTAAAAGAATGTCTAAGCTTTCTTTAAAATTTC
AGAAAAATCTTGTAGCGTAACAATAAAAATGGAGTCTTTGGAAAATCTAA
CTTGACGATCTTCTGTTTGTTATTTGTCTCTTGACTTTTTAGAGCCCTTT
GAACATGTTTACCAAAATGTTATCGCTGGAAATCGAAGAAGACGGTATTG
ATGTCATTGCTATCCACCCTGGGTGGGTACAAACAGATATGGGCGGTTCA
AATGCCACCCTCACTGTTCAACAATCAATTGACATGATGTTAGAGACGTT
ATCCAATCTCAGACAAGAACAAAATGGAACCTTAATCAATTTCAAAGGAG
AAACAATCCCATATTGAGAGAGACTTGGTTAAATGGATTATTTTATTGGG
ATGAGAGGAGAGAGACTCCAGAGACGAGAGGTCAAAATTGCAAAAAAATT
TGTATCTTATTTAAAATAGAATGAAGTTTAGAGTGACTTCGTCTATTAGA
GTAACAAGTGAAATAATATCAAGCTGATCAGGGTAGAGACATGTAAGCTG
TCAGTTAGGTAAACCACTAGAACGTTCATTATAATAAATCTTCCTAATAT
ATTTTTAATTTGAGATAAATTTTTGTATGATAATGTAAAGAAGAATGTTT
TTGAAAGTTTTACGAGTTTTTATGGATTCTACCAACCGAAATTGTGTGAA
AGAGCAGATTTTAATGATTTTAAGGCGATTATTTTAACATGACCTAAAGA
TGATGGTTAAGATGACCTTTTGGTTCGATTCTCCATGTTTATAATGTTTG
TATGTATTTTTCAGGTAACAGTAAAAATATCAAAGAAATAAAAACATCAA
TGAACATGACGGCCAATGAATTTTCATTTTCTTGTGATCCAAACTTCTGC
AGTGTTTGTGGTTCAATCCTCCCTCTCCCCGTCACTGGTTCAGATGTCCT
CTCCTGCAAGTTATGCTCAACTTCCATCAGTGTAGATTCTCTTGAAGGTA
TCGTCATCCATTCGTTCAAGAAGTTTAATCAACACAAACTCAAATCATCT
GATGAGATGGAACGAATGAAAGAAATGGAAGAGAGTGCGACCAACCATGG
ACCTGTGGTCAAACGAGAATGTTCGAAATGTCATCATAAGAAAATGACAT
ATACGACGCGTCAAACGAGGTCGGCCGATGAGGGCCAGACAGTCTTTTTC
ACATGCTTGAAATGCAATTTCACCGAGACCGAATATTCATAATGATTCTA
ATCGATATTTTTCTGCTGGAAATTTGATAATAATTTTAGCTGGAGAAGGT
AACAGTTTCTTGTACTTTTTGGAAATTGGTTGTACTTGCGTGAGTTATTG
ATATGCTGAAATTGTATCTTACATTGGTATTATTAGATCGATGGAAGACA
AAATACTTAGTTCCATTGTCATTGCATCATAGCTAGATGGTTATGCACTA
CGAATATCTTTTTGGAACAAGATGTTTATAATTCAATGTCAATTGATTTT
AAAAGCTCTTAAGCTTCTTACATCTCATTCAAACACACTGATGATAACTG
TATCATACAGCTATATAATCTATTTCCGATTACGTAATTACAATGATTTT
TCCTCACAGTTTTTTATTCCGTATGATTATTTATGGTCTTTGGAAGAGAT
GATATCTACACATTTGTAATATATATTTGAGCAACTCTTGTTATGACTTG
TTGTATGTCGTTAAGAAGGTCTTAGTTCTATACATTATTATCTATATATG
CAAGATTTGAAATGAATTGGTATTCACAATATCTAAACATTTCCAATCAT
ATATATTTAGTCTTATACTTCTCTTTCAATACCAATTTGTTATGTCGTTG
GAAAGGTCTTAATTCTATACATTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003049XLOC_003049Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005370-exon-sc0000052-1575043694:765460..765540TCONS_00005370-exon-sc0000052-1575043694:765460..765540Clytia hemisphaericaexon
TCONS_00005370-exon-sc0000052-1575043694:763958..764151TCONS_00005370-exon-sc0000052-1575043694:763958..764151Clytia hemisphaericaexon
TCONS_00005370-exon-sc0000052-1575043694:763583..763735TCONS_00005370-exon-sc0000052-1575043694:763583..763735Clytia hemisphaericaexon
TCONS_00005370-exon-sc0000052-1575043694:762424..763412TCONS_00005370-exon-sc0000052-1575043694:762424..763412Clytia hemisphaericaexon
TCONS_00005370-exon-sc0000052-1575043694:759001..759052TCONS_00005370-exon-sc0000052-1575043694:759001..759052Clytia hemisphaericaexon
TCONS_00005370-exon-sc0000052-1575043694:758068..758261TCONS_00005370-exon-sc0000052-1575043694:758068..758261Clytia hemisphaericaexon
TCONS_00005370-exon-sc0000052-1575043694:757400..757549TCONS_00005370-exon-sc0000052-1575043694:757400..757549Clytia hemisphaericaexon
TCONS_00005370-exon-sc0000052-1575043694:755467..757198TCONS_00005370-exon-sc0000052-1575043694:755467..757198Clytia hemisphaericaexon
TCONS_00005370-exon-sc0000052-1510915933:765460..765540TCONS_00005370-exon-sc0000052-1510915933:765460..765540Clytia hemisphaericaexon
TCONS_00005370-exon-sc0000052-1510915933:763958..764151TCONS_00005370-exon-sc0000052-1510915933:763958..764151Clytia hemisphaericaexon
TCONS_00005370-exon-sc0000052-1510915933:763583..763735TCONS_00005370-exon-sc0000052-1510915933:763583..763735Clytia hemisphaericaexon
TCONS_00005370-exon-sc0000052-1510915933:762424..763412TCONS_00005370-exon-sc0000052-1510915933:762424..763412Clytia hemisphaericaexon
TCONS_00005370-exon-sc0000052-1510915933:759001..759052TCONS_00005370-exon-sc0000052-1510915933:759001..759052Clytia hemisphaericaexon
TCONS_00005370-exon-sc0000052-1510915933:758068..758261TCONS_00005370-exon-sc0000052-1510915933:758068..758261Clytia hemisphaericaexon
TCONS_00005370-exon-sc0000052-1510915933:757400..757549TCONS_00005370-exon-sc0000052-1510915933:757400..757549Clytia hemisphaericaexon
TCONS_00005370-exon-sc0000052-1510915933:755467..757198TCONS_00005370-exon-sc0000052-1510915933:755467..757198Clytia hemisphaericaexon
TCONS_00005370-exon-sc0000052-1491911889:765460..765540TCONS_00005370-exon-sc0000052-1491911889:765460..765540Clytia hemisphaericaexon
TCONS_00005370-exon-sc0000052-1491911889:763958..764151TCONS_00005370-exon-sc0000052-1491911889:763958..764151Clytia hemisphaericaexon
TCONS_00005370-exon-sc0000052-1491911889:763583..763735TCONS_00005370-exon-sc0000052-1491911889:763583..763735Clytia hemisphaericaexon
TCONS_00005370-exon-sc0000052-1491911889:762424..763412TCONS_00005370-exon-sc0000052-1491911889:762424..763412Clytia hemisphaericaexon
TCONS_00005370-exon-sc0000052-1491911889:759001..759052TCONS_00005370-exon-sc0000052-1491911889:759001..759052Clytia hemisphaericaexon
TCONS_00005370-exon-sc0000052-1491911889:758068..758261TCONS_00005370-exon-sc0000052-1491911889:758068..758261Clytia hemisphaericaexon
TCONS_00005370-exon-sc0000052-1491911889:757400..757549TCONS_00005370-exon-sc0000052-1491911889:757400..757549Clytia hemisphaericaexon
TCONS_00005370-exon-sc0000052-1491911889:755467..757198TCONS_00005370-exon-sc0000052-1491911889:755467..757198Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000052supercontigsc0000052:755467..765540 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.93489	0.0110263	0.00200145	3.66877e-06	0	0	3.21515e-08	0	0	0	1.72368e-10	0	0	0	0	0	0	0	1.60896e-09	0	2.95571e-09	0.560493	6.62904e-06	7.26891e-08	6.43618	1.54531	0.00931959	1.38914	0.344271	0
Blast
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BLAST of TCONS_00005370 vs. Swiss-Prot (Human)
Match: RPA12 (DNA-directed RNA polymerase I subunit RPA12 OS=Homo sapiens GN=ZNRD1 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.098e-25
Identity = 58/130 (44.62%), Postives = 75/130 (57.69%), Query Frame = 1 
Query: 2521 MNMTANEFSFSCDPNFCSVCGSILPLPVTGSDVLSCKLCSTSISVDSLEGIVIHSFKKFNQHKLKSSDEMERMKEMEESATNHGPVVKRECSKCHHKKMTYTTRQTRSADEGQTVFFTCLKCNFTETEYS 2910
            M++     SF  D +FCS CGS+LPLP    D ++C  C  +I+V   EG V+ +   F  H+L ++  M     +EE     GPVV R C +C H+ M Y TRQ RSADEGQTVF+TC  C F E E S
Sbjct:    4 MDLANTCSSFQSDLDFCSDCGSVLPLP-GAQDTVTCIRCGFNINVRDFEGKVVKTSVVF--HQLGTAMPMS----VEEGPECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEKEDS 126
The following BLAST results are available for this feature:
BLAST of TCONS_00005370 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RPA124.098e-2544.62DNA-directed RNA polymerase I subunit RPA12 OS=Hom... [more]
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