TCONS_00005369 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005369
Unique NameTCONS_00005369
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3963

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005369 ID=TCONS_00005369|Name=TCONS_00005369|organism=Clytia hemisphaerica|type=transcript|length=3963bp
CGTAAACCTTCTGAAGCTTAAATGTCACTTGTGAGAAAAGTATCCAAGCT
TGCATTGAAGAAGTCTCCAAAGTTTGCGGTGAAGTCGGATTGAGTTGTTT
GATCAACAATGCAGGAGCAATAAAGAAGCCGGATAACAAAGTTACTGAAC
TATCATTGGATGATCTCAAACGTATTTTTAGTGTTAACACCTTTGGCCCG
TCAATAGTTTGTAAGCATGCACTCGTTATGCTCCAACAGGCAGCTATGAA
AACATCTAGTGATTACATCATCTCAAAGCCACTAATCATAAATATTGGAA
CCATTTTATCTTCGATTGGGAGTGTGGAACGATTTGGACTCTCCCATTAC
AGCTACAAAATGTCAAAGAGTTCATTGAatatgtttacaaaaatgttgTC
TTTGGAGCTCAAACAGGATGACATCGGTGTTATTTGCATCAACCCTGGTT
GGGTTCAAACAGAGCTTGGAGGTTGGAATGCCACTTTGACAGTTGAGCAG
TCAGTTGATCAGATGTTAAAAACTTTATCAATTTTGAAGCCTGACCAAAT
GGGATCACTCATAGATATTGATGGAAGTATTATTCCTTATTGATATTCCC
TTTGGAAAAGCTAATTCATATTCCTGATATATTGTCAATCAAAATTGTCT
TCAATTAACCTGAATCTagcaagaactaattttggcaatcagaaaaaatc
ctaaaaaagatttttcaaagattcagCAAGAGACTcattttgctgagtca
gcaatttttttagttttaacaaAACTATTTTTAGCGAATAGTTATATTTT
TGTTGTCTCAGAACAAGTGTTTTGTGGATTCGGGGCTGTTCCAGGAAGTG
ATAGAAAGTTTTGGCATGTAACTTTTTGTGGCAgagcagcaaattttcaa
atcttttattaGTTTTGGTATCACAAACTAGAATAATAAAGCCCAAATAA
TTTTTATGCTTTCATTTATAATACATACATCTTCATCAGATTTTTTTACC
atacaatattttgaaatataagaaTTTTTATAAACAATATGAATAATATT
ATGATGGTAGAgagttttgtatatttttatgcaCACATTGTATAAATCTC
ACATATATAATTtggatttttattatttttaatgattttctctGATTCTC
TTCAGTTTCTTTCTAGTTCTTCACTTTACCTGCATCTATTCTTCATTTAT
CATGTTTacagaaaaataagaaaatatgtcacaaaaatttgcgaaaaacc
TTCTTATAACAGGTGCCAACCGTGGTATTGGTTTGGAATTTGTGAAGAAG
TTGGCGAGCAGAGTTGATATTTTATTTGCTGGATGTCGCAAACCTTCTGA
AGCTAAGGAACTGAATGCTTTGAAGGATGTGCACAACAACATCCATGTGG
TGGAAATAGATGTCACATGCGAAAAAAACATCCAAGCTTGCATCGAAGAA
GTCTCCAAAGTTTGTGGTGAAGCCGGATTGAGTTGCTTGATCAACAATGC
GGGAGCATTAATTAAACCTGATGACAAAGTCACTGAACTGACATTGGAAA
AATTTAATCATATTTTTAGTGTTAATATCTTTGGCCCCTCAATAGTTTGT
AAGCACTCGCTAAATTTACTCCAACAAGCTACCAAAACACATTCAGATCA
AATCATCACAAAGCCTTTAATCGTTAACATTGGGTCAGACTTATCATCAG
TCAGCATTATGGACCGCAATATGGGCTTCTACTATTCTTATAATATGTCC
AAGAGCTCTTTGAACATGTTTACCAAAATGTTATCGCTGGAGATCGAACA
AGACGGTATTGATGTCATTGCTATCCACCCTGGGTGGGTACAAACAGATA
TGGGCGGTGCAAATGGCACCCTCACTGTTCAGCAATNGATTGACATGATG
TTAGAGACGTTATCCACCCTCAGACAAGATCAAAATGGAACCTTGATCGA
TTTCAAAGGAGAAACCATCCCATATTGAGTTAGAATCAAACCACTCGAAC
ATGCATTAGAAATCTATTAAATAGATattaatattatttttaatttagaa
taaattatttttacaggttacagaaaaataaaaaaatatgtcacaaaaat
ttgcgaaaagcCTTCTTATAACAGGTGCCAATCGTGGTATTGGTTTGGAA
TTTGTGAAGAAGTTGGCGAGCAGAGTTGATATTTTATTTGCTGGTTGTCG
CAAACCTTCTGAAGCTAAGGAACTGAATGCTTTGAAGGATGCGCACAACA
ACCTTCATGTAGTGGAAATAGATGTCACTTGCGAAAAAAACATCCAAGCT
TGCATTGAAGAAGTCTCTAAAGTTTGCGGTGAAGCCGGATTGAGTTGTTT
GATTAACAATGCAGGAGCTAACAAGAAGCCGGATAACAAAGTTACCGAAC
TATCATTGGATGACCTCAAACGTATTTTTAGTGTCAACACTTTTGGTCCT
CCCATAGTGTGTAAGCATTCCCTATCATTGCTTCAACAAGCTGCCAAAAC
ACATTCAGATCAAATCATCACAAAGCCTCTTATCGTTAACATTGGGACTG
GTTTATCGTCTGTCAGCAGAATGAATCGCGATATGAGTTGCTATTATTCC
TATAATATGTCCAAGAGCCCTTTGAACATGTTTACCAAAATGTTATCGCT
GGAAATCGAAGAAGACGGTATTGATGTCATTGCTATCCACCCTGGGTGGG
TACAAACAGATATGGGCGGTTCAAATGCCACCCTCACTGTTCAACAATCA
ATTGACATGATGTTAGAGACGTTATCCAATCTCAGACAAGAACAAAATGG
AACCTTAATCAATTTCAAAGGAGAAACAATCCCATATTGAGAGAGACTTG
GTTAAATGGATTATTTTATTGGGATGAGAGGAGAGAGACTCCAGAGACGA
GAgGTAACagtaaaaatatcaaagaaataaaaacatcaatgaACATGACG
GCcaatgaattttcattttcttgtgATCCAAACTTCTGCAGTGTTTGTGG
TTCAATCCTCCCTCTCCCCGTCACTGGTTCAGATGTCCTCTCCTGCAAGT
TATGCTCAACTTCCATCAGTGTAGATTCTCTTGAAGGTATCGTCATCCAT
TCGTTCAAGAAGTTTAATCAACACAAACTCAAATCATCTGATGAGATGGA
ACGAATGAAAGAAATGGAAGAGAGTGCGACCAACCATGGACCTGTGGTCA
AACGAGAATGTTCGAAATGTCATCATAAGAAAATGACATATACGACGCGT
CAAACGAGGTCGGCCGATGAGGGCCAGACAGTCTTTTTCACATGCTTGAA
ATGCAATTTCACCGAGACCGAATATTCATAATGATTCTAATCGATATTTT
TCTGCTGGaaatttgataataattttaGCTGGAGAAGGTAACAGTTTCTT
GTACTTTTTGGAAATTGGTTGTACTTGCGTGAGTTATTGATATGCTGAAA
TTGTATCTTACATTGGTATTATTAGATCGATGGAAGACAAAATACTTAGT
TCCATTGTCATTGCATCATAGCTAGATGGTTATGCACTACGAATATCTTT
TTGGAACAAGATGTTTATAATTCAATGtcaattgattttaaaagcTCTTA
AGCTTCTTACATCTCATTCAAACACACTGATGATAACTGTATCATACAGC
TATATAATCTATTTCCGATTACGTAATTACAATGATTTTTCCTCACAGTT
TTTTATTCCGTATGATTATTTATGGTCTTTGGAAGAGATGATATCTACAC
ATTTGTAATATATATTTGAGCAACTCTTGTTATGACTTGTTGTATGTCGT
TAAGAAGGTCTTAGTTCTATACATTATTATCTATATATGCAAGATTTGAA
ATGAATTGGTATTCACAATATCTAAACATTTCCAATCATATATATTTAGT
CTTATACTTCTCTTTCAATACCAATTTGTTATGTCGTTGGAAAGGTCTTA
ATTCTATACATTA
Run BLAST on NCBI

transcript from alignment at sc0000052:755467..765480-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005369 ID=TCONS_00005369|Name=TCONS_00005369|organism=Clytia hemisphaerica|type=transcript|length=10014bp|location=Sequence derived from alignment at sc0000052:755467..765480- (Clytia hemisphaerica)
CGTAAACCTTCTGAAGCTTAAGTATACTCTTATATTGATTACATTTTTCT
CCGAAGATATTTTTGAAGCAATTTCTTTTTCCATGGTTCTCTACTTAGGA
TAGTTTGTAGAAGACAATTTGGTTGGCAAACAATATTATCCTCTAGAGGA
TGCATGATCTCTCATTTTCGCTGCTATTTTCTACTTTCCTGTCTTCTATT
CTGATTTTCTGACTTTCTCAAGTGTTCTTAACTGTTTTTACATATTTTTT
CTAAAGTTCGCTTGAACCACCAAATGCAACCAAAGCAACCTTTGGTTTGC
AAACCCAATGCCTAACCTCTTACGTTACTGAGACACAGCAGAATACTGTC
ATTCATAAATACTGTCAACTGCTCTAACTTGGGACGGTTGGTCGACTGGG
ACATGGGACTGTTTGATATCTGGCCTGTATTTTTTCACTTACTATTAAAT
CTCTTTGACCACAAATTTGTTTTGATAATTCCACCAAGTTTATCAATCAT
ACTTTCTGTCATACTGTAACATGTCACAATATCTTCCACTACGGAATAAC
TTTCATATTTCGATTTAAAAGCCTACTCGCTGCGAAAGAGAAATTGTGTA
TTTTTTAATATGCCTTTCATTAACTCAAATCAAATGACTTTGGAGGTTTG
GTGAAATGGTGGCCAAATTGTCGTCCCATGTTTTGTCAGATAGTCCCAAG
TTAGAGCAGTTGACGGTACTTATAGCGTTAAATTACATACCTTAATTGAA
ATAGCTCCCAACCCTACTTGTGCCCCTACAAGGATCTCTACAGCACCCTA
ACTTAATTCAGAGTGTATGAGTGCCCCTAAGAAGGCCTTTGGCCTTATAT
TGTGACTCACAAGCTCTAACCCTAACCCTAACTGATAATAACTGAACCCT
GTCTAGGTACGCAGACTGAAAAATTCGACTTGCATCCTGGAGGATGATAT
TGTTTCCCAACCCAATCAAGCAGTCATTCATTTAATAAAAGAAATCGTCA
GCTTATATAAAAAATTTGACAAGAGTATTTTATTTTTAGGAATTGAATGA
GCTTAAAAACTTTCACCACAATGTTCATATATTAGAGCTAGGTAAATTTC
ATCCACTCTTTTAATAAATATTCCGTTTTCATGAAACTCTGAGTTTGAAA
CAAAGATATTGTGTCAACTCTTTATTATAATAACGCTCTATTTACTGATT
GAGCACTCTACGAGGAGAAGATATACACCCTCTACAGTTTTCATATTTGT
TAAATATCTTATGGACTTGGCTAATTTTTATTTGGAAGATTTTTAACCAG
GTCTGTCTTCATTGTCTATCTTTTGTCAGATGTCACTTGTGAGAAAAGTA
TCCAAGCTTGCATTGAAGAAGTCTCCAAAGTTTGCGGTGAAGTCGGATTG
AGTTGTTTGATCAACAATGCAGGAGCAATAAAGAAGCCGGATAACAAAGT
TACTGAACTATCATTGGATGATCTCAAACGTATTTTTAGTGTTAACACCT
TTGGCCCGTCAATAGTTTGTAAGGTAGAATAAATAGATCTTAGCAACACG
TCCTTTAATTTGATATTAAATTTTTCCTGGCACTTGTACCTCTAGATCAA
AAATATGTGTCAAACATTATTAGTTGATATATATGGTCTATTTGTATTTG
TTCTTTTTTGTGCTGATTTATGCAAATTATCTCCACTTGATTTCGTTTTC
CTGACTTTCAATTAATTGATAGTCTAAAGAAGTGTTTTCTTATAGCATGC
ACTCGTTATGCTCCAACAGGCAGCTATGAAAACATCTAGTGATTACATCA
TCTCAAAGCCACTAATCATAAATATTGGAACCATTTTATCTTCGATTGGG
AGTGTGGAACGATTTGGACTCTCCCATTACAGCTACAAAATGTCAAAGGT
ACCCTACTGTGTTATTTCTTTAGCTATAGGCTTAACCAACCTAGCTCTCT
GCTTTTAAATTGTTCAAACTAGCATAGGAAAGATCTTTCTGCCAACAGCC
TGGCCTCTTGTCTGGAGAAAAATGACATTGGAAACTATTCTATTTTAACT
GTATTTGATTGCTTTTAGAGTTCATTGAATATGTTTACAAAAATGTTGTC
TTTGGAGCTCAAACAGGATGACATCGGTGTTATTTGCATCAACCCTGGTT
GGGTTCAAACAGAGCTTGGAGGTTGGAATGCCACTTTGACAGTTGAGCAG
TCAGTTGATCAGATGTTAAAAACTTTATCAATTTTGAAGCCTGACCAAAT
GGGATCACTCATAGATATTGATGGAAGTATTATTCCTTATTGATATTCCC
TTTGGAAAAGCTAATTCATATTCCTGATATATTGTCAATCAAAATTGTCT
TCAATTAACCTGAATCTAGCAAGAACTAATTTTGGCAATCAGAAAAAATC
CTAAAAAAGATTTTTCAAAGATTCAGCAAGAGACTCATTTTGCTGAGTCA
GCAATTTTTTTAGTTTTAACAAAACTATTTTTAGCGAATAGTTATATTTT
TGTTGTCTCAGAACAAGTGTTTTGTGGATTCGGGGCTGTTCCAGGAAGTG
ATAGAAAGTTTTGGCATGTAACTTTTTGTGGCAGAGCAGCAAATTTTCAA
ATCTTTTATTAGTTTTGGTATCACAAACTAGAATAATAAAGCCCAAATAA
TTTTTATGCTTTCATTTATAATACATACATCTTCATCAGATTTTTTTACC
ATACAATATTTTGAAATATAAGAATTTTTATAAACAATATGAATAATATT
ATGATGGTAGAGAGTTTTGTATATTTTTATGCACACATTGTATAAATCTC
ACATATATAATTTGGATTTTTATTATTTTTAATGATTTTCTCTGATTCTC
TTCAGTTTCTTTCTAGTTCTTCACTTTACCTGCATCTATTCTTCATTTAT
CATGTTTACAGAAAAATAAGAAAATATGTCACAAAAATTTGCGAAAAACC
TTCTTATAACAGGTGCCAACCGTGGTATTGGTTTGGAATTTGTGAAGAAG
TTGGCGAGCAGAGTTGATATTTTATTTGCTGGATGTCGCAAACCTTCTGA
AGCTAAGGTATGAATTTATTTTTCAGTGCAAGAAAAGATCTTTATACTCT
ATATACTAACAGCAACGGACTAGCAGTACTTTCTCCTCATAGTTCGCCAA
CAATCGCTGTCTTACCTTTCAATACGCCTACATTACAGTATATTTCTTTA
ACTATCAACTGAGCTTTTCTGAGACAAAGCATTTAGATTGAGTCAACTCA
TCTTCAGTTTAAGACTTCAAAGAGAACATTAGTTTTTTGTAGCCTGGAAA
GAGAAAAGGTTAGTATGTAATTGGAAGTGTCACTAATGTTGCATGCCTGT
CTATGTAGAGGCTTTGTAGCTGTGTATAAGGCTTTGAGGTTATAGCAAAA
TTTATAATGATTCTTATATTCCTAATTTGCATAGTTGATTCATTTTTCAG
GAACTGAATGCTTTGAAGGATGTGCACAACAACATCCATGTGGTGGAAAT
AGGTTGGTGAAATCTGAAAATTCAGCCGGGAAAATCCGAATATCTGGGAG
GGGAAAACAGTAAATTCAATTAGAAAGAACTGAAAGCTCGGTTTGGATCT
GAAAACTCAATTGGAAAACCCAAAAACTCAATTGGAAAACCTGAAAACAT
GGTTTGTAATTATTTACAGTTTGACACACTCTTTTTGTTAAAGTATTTTC
ATACTTCTCTTACATCCACTCTGACCAGGTTATCTGAAAACCCAGCACTG
CTGTTAACGAAATATAATAAATACCATTTGGTCAAAAAGGTACAACCTAT
CAAACAATTGCAACAATGTTTATTTATTCAGACAATGTAGTGGCTGAACA
ATGGACTAACTGTCTTTCTTCTCCGTTTCAGATGTCACATGCGAAAAAAA
CATCCAAGCTTGCATCGAAGAAGTCTCCAAAGTTTGTNACCCTTCTTCTC
CGTTTCAGATGTCACATGCGAAAAAAACATCCAAGCTTGCATCGAAGAAG
TCTCCAAAGTTTGTGGTGAAGCCGGATTGAGTTGCTTGATCAACAATGCG
GGAGCATTAATTAAACCTGATGACAAAGTCACTGAACTGACATTGGAAAA
ATTTAATCATATTTTTAGTGTTAATATCTTTGGCCCCTCAATAGTTTGTA
AGGTAAAAGGTGTTTGGAAATCTCTTTTCTGTTTAGTATTTTTGTCAATT
CAGAGCTTTCCTTCTTATGACGACTAACAGTAAGAGAAAGTTTNGTTTAG
TATTTTTGTTAATTCAGAGCTTTCCTTCTTATGACGACTAACAGTAAGAG
AAAGTTTCATTCGATTTTGAATCTTTTTGGTAATTCAAAGAGAGCACCTG
GCCTCCTGGACTGTAAAATTTACAATGATCAGATGAACTATGAAACTGTG
GGAGTATCCGATCCTAATTCCAACTGAACTTTCTCCCATTTCAGCACTCG
CTAAATTTACTCCAACAAGCTACCAAAACACATTCAGATCAAATCATCAC
AAAGCCTTTAATCGTTAACATTGGGTCAGACTTATCATCAGTCAGCATTA
TGGACCGCAATATGGGCTTCTACTATTCTTATAATATGTCCAAGGTATTG
AGATAATTATATCACACTAACAATCAGTTCTCGACTCGCCTGTAGTTTAG
CCATTTCTGGATACCGTTCTGTTGAATGGGGTTGTATTAATTGATACGAC
ATTACTGTATCACAAAAGAGAATATCAAGTTTAGGAAAGCTCTACCTTTT
AAGGGAATGAATTAATCAATTAATGCGAATATGGTCTTTTTTCGCAAACG
TAAATTTCGCAAAAACTTGAAAATTACGGTTGTTTGCATTAATAAGTTCC
GCATTTTTTTTCTAAATTTTTCTGATTTATGAGGTGTAAACCCTAAATAT
CGTTTTCTGGGCTCCAGGGCATAAATAAAGCACTTGTATATTTGACATTA
TTCTGATACTCAATAAGTGCCTAAACCAGATGTTACCTTAAGAGAAGAAA
TTTTGGTGGGAAGGGGCCCATTTTAGTGCAATTTGGCAGAATTTATTTTG
GCGAATTGATTAAAATCTCTAAATTTGGCAAGGATTAATTTTGGCGAACG
ACACGTTATTTGTTAAAAATTTTTAGCTGAGAATCGAGAAGGACAGGCGA
TTTTAGGGAAAATGGAGACTTAAGTGAAAGAAATTTAATCTAATTTAATT
TTGGAATTTTGGTGAATTTGGCAAGATTTTTAAATTTCTTCCCTTAAAGG
TAGAATGCAATAAAGAAAGACATAAAGCAATAAAGAAAACAAGATTCTTA
AAATCAATAGTTCCTCATTATTATAATCATACCAAATTATTTCATTGGAA
ATTTTTTTGGTTTGTTCTGCTTCTTGAAAAGGAAAAAACCTTTTCAAACG
CTATTTCACATAATTCCGTAAAATCTATAAAATGGGCCTATTCGCATTAT
AATTTTTTCTCCAAAACATAAAACTAATATTCCTGAGAAATCTTGCAGCG
AAACAATGATAATGTAACCTTCAGAAAGCTCCTTAACTTTTCTATGTTTT
AAATTTGTCTAACTTTTTAGAGCTCTTTGAACATGTTTACCAAAATGTTA
TCGCTGGAGATCGAACAAGACGGTATTGATGTCATTGCTATCCACCCTGG
GTGGGTACAAACAGATATGGGCGGTGCAAATGGCACCCTCACTGTTCAGC
AATCAATTGCCATGATGTTAGATACGTTATCCAACCTCAGACAAGATCAA
AATGGAACCTTAATCAATTTCAAAGGAGAAAACATCCCATATTGAGAGAG
ACTTGAACATNGATTGACATGATGTTAGAGACGTTATCCACCCTCAGACA
AGATCAAAATGGAACCTTGATCGATTTCAAAGGAGAAACCATCCCATATT
GAGTTAGAATCAAACCACTCGAACATGCATTAGAAATCTATTAAATAGAT
ATTAATATTATTTTTAATTTAGAATAAATTATTTTTACAGGTTACAGAAA
AATAAAAAAATATGTCACAAAAATTTGCGAAAAGCCTTCTTATAACAGGT
GCCAATCGTGGTATTGGTTTGGAATTTGTGAAGAAGTTGGCGAGCAGAGT
TGATATTTTATTTGCTGGTTGTCGCAAACCTTCTGAAGCTAAGGTATGAA
TTTATTTCAAAGCAAAAGAAAAGTTAGTGCAAGAGAGAGCTATTGTAAAA
GATGTAAATACTTCTCATTGTAGCTCCAATCACAATCAGCGCATGCCAAT
AATAACATACTGTACTTCAGGTGTATTGAAAGATTGTAAATATCAGACAG
GGATTGTTGGCGAACTATGAGGGAAAAGTACTGTTTGTCCGCTGCTGCTG
TACAGGCTGTGTATAGGCTTTGATGTTAAGCAAAGTTTATTATGATTCTT
CTGATTTTGTATTGTTGATTAATTTCAGGAACTGAATGCTTTGAAGGATG
CGCACAACAACCTTCATGTAGTGGAAATAGGTTGGTGAAATCTCGAAGGT
CAGCCGGGAAAACTATCCAGGTGGGAAAATCCGAATGGCCGAGTGGGGAA
AACATTAATTTCGATTAGTCAATTTGTAACTGGGGAGGGAAAACAGTAAA
CTCGATTAGTCAATTTGTAACTGGGAAGGGTAAACTCAGCTTGAAAATAT
AACATACGTTATTGTATATATGCCTCAAAAAAGATTGAAATATCTCTTTC
GTAGATGGGATTGATGCCAGCAGGTGCCAATACTATACAATTTCAAACTA
GTCCTGTACTATCCTGTAGCACAATTTAGTTCTATAGCCATTCGTGAAAA
TGAACCACCACGGTTTCTTTATCTACCATTCACGCTGAATCTGTTGGTAG
CATCGGATATTTGATTTCCAGACCTCGAAAAAAACCGTTAGTAAAGGGTC
CCCTTGATAAGTTCAATCGATTCACTAAAAATCGATTTACTCGAAAACTG
CAGGAGATTCAAAGGGCATTTTCTTTTTGTCAATTCTACACCCTATTAGA
AGCATAATATCAAAAATTGACTAACTGATCTAAGGGGTGGCCTACGAAGT
GACACAATTCACTACCTCGGCCGATAGTCTAGTGTTCTGGATCAACTGCT
TGACCCCCCCCCCTGACATTTTGATACATACTTTCAAAATGTTTATTCAA
TCAAATAATGTAACGCCAGAACAGTGGGCTGGGGACTAACAACACTTTAT
TTTTTTCCATTCATTTCAGATGTCACTTGCGAAAAAAACATCCAAGCTTG
CATTGAAGAAGTCTCTAAAGTTTGCGGTGAAGCCGGATTGAGTTGTTTGA
TTAACAATGCAGGAGCTAACAAGAAGCCGGATAACAAAGTTACCGAACTA
TCATTGGATGACCTCAAACGTATTTTTAGTGTCAACACTTTTGGTCCTCC
CATAGTGTGTAAGGTAAAAAAGATGTTTGCGATTCTCCAAGGTTTCTTGT
CTCGCCCTCTAATTTGAGCCTCTATGATTCCTCTATTTGTTACTCAAACT
AACACATTTTTTTCTGCTCAGCTTGGAAAGTCATACTAAACGATTCCCTA
TAATTGTTTTATATTTAATTCCTTTAAAAATGTCGAATTACAGAGAGAGT
TAATAGCGAGATTATGTATCGGAGATATTCTACGGCTACGGTTGCGGGGC
TGCCCATGCGGGTCGTCACCAAAGGCGACATGTCGTTGTCTACTTTGCTC
TGTACGGGAAATACACCAAAACACCGTATAAGCAAAGTCGACATAATGCC
GTACGTCAAATATCGGACTTGCTTTCACCCGCCATTACTTGCCTTACTCG
CCATTTCCCTCGCCCTTCAGCCGTAGCCGTAGAGAATTCCAGATACATAA
TCTCGCTAATGAAAGCTGTGTACACGAGCTTCATCGCCTGAGCTTCCTCT
CTAATCTTGATTTACTTCATGGACCTTTCAGCATTCCCTATCATTGCTTC
AACAAGCTGCCAAAACACATTCAGATCAAATCATCACAAAGCCTCTTATC
GTTAACATTGGGACTGGTTTATCGTCTGTCAGCAGAATGAATCGCGATAT
GAGTTGCTATTATTCCTATAATATGTCCAAGGTAAAGATTTCTTGTTACA
TTAGCAATTATTTCTCGACTTGCCTATAGTTGTGCCATTGTTATAGTTTG
AAAGAGTTTAAAAGAATGTCTAAGCTTTCTTTAAAATTTCAGAAAAATCT
TGTAGCGTAACAATAAAAATGGAGTCTTTGGAAAATCTAACTTGACGATC
TTCTGTTTGTTATTTGTCTCTTGACTTTTTAGAGCCCTTTGAACATGTTT
ACCAAAATGTTATCGCTGGAAATCGAAGAAGACGGTATTGATGTCATTGC
TATCCACCCTGGGTGGGTACAAACAGATATGGGCGGTTCAAATGCCACCC
TCACTGTTCAACAATCAATTGACATGATGTTAGAGACGTTATCCAATCTC
AGACAAGAACAAAATGGAACCTTAATCAATTTCAAAGGAGAAACAATCCC
ATATTGAGAGAGACTTGGTTAAATGGATTATTTTATTGGGATGAGAGGAG
AGAGACTCCAGAGACGAGAGGTCAAAATTGCAAAAAAATTTGTATCTTAT
TTAAAATAGAATGAAGTTTAGAGTGACTTCGTCTATTAGAGTAACAAGTG
AAATAATATCAAGCTGATCAGGGTAGAGACATGTAAGCTGTCAGTTAGGT
AAACCACTAGAACGTTCATTATAATAAATCTTCCTAATATATTTTTAATT
TGAGATAAATTTTTGTATGATAATGTAAAGAAGAATGTTTTTGAAAGTTT
TACGAGTTTTTATGGATTCTACCAACCGAAATTGTGTGAAAGAGCAGATT
TTAATGATTTTAAGGCGATTATTTTAACATGACCTAAAGATGATGGTTAA
GATGACCTTTTGGTTCGATTCTCCATGTTTATAATGTTTGTATGTATTTT
TCAGGTAACAGTAAAAATATCAAAGAAATAAAAACATCAATGAACATGAC
GGCCAATGAATTTTCATTTTCTTGTGATCCAAACTTCTGCAGTGTTTGTG
GTTCAATCCTCCCTCTCCCCGTCACTGGTTCAGATGTCCTCTCCTGCAAG
TTATGCTCAACTTCCATCAGTGTAGATTCTCTTGAAGGTATCGTCATCCA
TTCGTTCAAGAAGTTTAATCAACACAAACTCAAATCATCTGATGAGATGG
AACGAATGAAAGAAATGGAAGAGAGTGCGACCAACCATGGACCTGTGGTC
AAACGAGAATGTTCGAAATGTCATCATAAGAAAATGACATATACGACGCG
TCAAACGAGGTCGGCCGATGAGGGCCAGACAGTCTTTTTCACATGCTTGA
AATGCAATTTCACCGAGACCGAATATTCATAATGATTCTAATCGATATTT
TTCTGCTGGAAATTTGATAATAATTTTAGCTGGAGAAGGTAACAGTTTCT
TGTACTTTTTGGAAATTGGTTGTACTTGCGTGAGTTATTGATATGCTGAA
ATTGTATCTTACATTGGTATTATTAGATCGATGGAAGACAAAATACTTAG
TTCCATTGTCATTGCATCATAGCTAGATGGTTATGCACTACGAATATCTT
TTTGGAACAAGATGTTTATAATTCAATGTCAATTGATTTTAAAAGCTCTT
AAGCTTCTTACATCTCATTCAAACACACTGATGATAACTGTATCATACAG
CTATATAATCTATTTCCGATTACGTAATTACAATGATTTTTCCTCACAGT
TTTTTATTCCGTATGATTATTTATGGTCTTTGGAAGAGATGATATCTACA
CATTTGTAATATATATTTGAGCAACTCTTGTTATGACTTGTTGTATGTCG
TTAAGAAGGTCTTAGTTCTATACATTATTATCTATATATGCAAGATTTGA
AATGAATTGGTATTCACAATATCTAAACATTTCCAATCATATATATTTAG
TCTTATACTTCTCTTTCAATACCAATTTGTTATGTCGTTGGAAAGGTCTT
AATTCTATACATTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003049XLOC_003049Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005369-exon-sc0000052-1575043694:765460..765480TCONS_00005369-exon-sc0000052-1575043694:765460..765480Clytia hemisphaericaexon
TCONS_00005369-exon-sc0000052-1575043694:763958..764151TCONS_00005369-exon-sc0000052-1575043694:763958..764151Clytia hemisphaericaexon
TCONS_00005369-exon-sc0000052-1575043694:763583..763735TCONS_00005369-exon-sc0000052-1575043694:763583..763735Clytia hemisphaericaexon
TCONS_00005369-exon-sc0000052-1575043694:762424..763412TCONS_00005369-exon-sc0000052-1575043694:762424..763412Clytia hemisphaericaexon
TCONS_00005369-exon-sc0000052-1575043694:761979..762030TCONS_00005369-exon-sc0000052-1575043694:761979..762030Clytia hemisphaericaexon
TCONS_00005369-exon-sc0000052-1575043694:761329..761522TCONS_00005369-exon-sc0000052-1575043694:761329..761522Clytia hemisphaericaexon
TCONS_00005369-exon-sc0000052-1575043694:760887..761036TCONS_00005369-exon-sc0000052-1575043694:760887..761036Clytia hemisphaericaexon
TCONS_00005369-exon-sc0000052-1575043694:759780..759910TCONS_00005369-exon-sc0000052-1575043694:759780..759910Clytia hemisphaericaexon
TCONS_00005369-exon-sc0000052-1575043694:759338..759672TCONS_00005369-exon-sc0000052-1575043694:759338..759672Clytia hemisphaericaexon
TCONS_00005369-exon-sc0000052-1575043694:759001..759052TCONS_00005369-exon-sc0000052-1575043694:759001..759052Clytia hemisphaericaexon
TCONS_00005369-exon-sc0000052-1575043694:758068..758261TCONS_00005369-exon-sc0000052-1575043694:758068..758261Clytia hemisphaericaexon
TCONS_00005369-exon-sc0000052-1575043694:757400..757549TCONS_00005369-exon-sc0000052-1575043694:757400..757549Clytia hemisphaericaexon
TCONS_00005369-exon-sc0000052-1575043694:756911..757198TCONS_00005369-exon-sc0000052-1575043694:756911..757198Clytia hemisphaericaexon
TCONS_00005369-exon-sc0000052-1575043694:755467..756526TCONS_00005369-exon-sc0000052-1575043694:755467..756526Clytia hemisphaericaexon
TCONS_00005369-exon-sc0000052-1510915933:765460..765480TCONS_00005369-exon-sc0000052-1510915933:765460..765480Clytia hemisphaericaexon
TCONS_00005369-exon-sc0000052-1510915933:763958..764151TCONS_00005369-exon-sc0000052-1510915933:763958..764151Clytia hemisphaericaexon
TCONS_00005369-exon-sc0000052-1510915933:763583..763735TCONS_00005369-exon-sc0000052-1510915933:763583..763735Clytia hemisphaericaexon
TCONS_00005369-exon-sc0000052-1510915933:762424..763412TCONS_00005369-exon-sc0000052-1510915933:762424..763412Clytia hemisphaericaexon
TCONS_00005369-exon-sc0000052-1510915933:761979..762030TCONS_00005369-exon-sc0000052-1510915933:761979..762030Clytia hemisphaericaexon
TCONS_00005369-exon-sc0000052-1510915933:761329..761522TCONS_00005369-exon-sc0000052-1510915933:761329..761522Clytia hemisphaericaexon
TCONS_00005369-exon-sc0000052-1510915933:760887..761036TCONS_00005369-exon-sc0000052-1510915933:760887..761036Clytia hemisphaericaexon
TCONS_00005369-exon-sc0000052-1510915933:759780..759910TCONS_00005369-exon-sc0000052-1510915933:759780..759910Clytia hemisphaericaexon
TCONS_00005369-exon-sc0000052-1510915933:759338..759672TCONS_00005369-exon-sc0000052-1510915933:759338..759672Clytia hemisphaericaexon
TCONS_00005369-exon-sc0000052-1510915933:759001..759052TCONS_00005369-exon-sc0000052-1510915933:759001..759052Clytia hemisphaericaexon
TCONS_00005369-exon-sc0000052-1510915933:758068..758261TCONS_00005369-exon-sc0000052-1510915933:758068..758261Clytia hemisphaericaexon
TCONS_00005369-exon-sc0000052-1510915933:757400..757549TCONS_00005369-exon-sc0000052-1510915933:757400..757549Clytia hemisphaericaexon
TCONS_00005369-exon-sc0000052-1510915933:756911..757198TCONS_00005369-exon-sc0000052-1510915933:756911..757198Clytia hemisphaericaexon
TCONS_00005369-exon-sc0000052-1510915933:755467..756526TCONS_00005369-exon-sc0000052-1510915933:755467..756526Clytia hemisphaericaexon
TCONS_00005369-exon-sc0000052-1491911889:765460..765480TCONS_00005369-exon-sc0000052-1491911889:765460..765480Clytia hemisphaericaexon
TCONS_00005369-exon-sc0000052-1491911889:763958..764151TCONS_00005369-exon-sc0000052-1491911889:763958..764151Clytia hemisphaericaexon
TCONS_00005369-exon-sc0000052-1491911889:763583..763735TCONS_00005369-exon-sc0000052-1491911889:763583..763735Clytia hemisphaericaexon
TCONS_00005369-exon-sc0000052-1491911889:762424..763412TCONS_00005369-exon-sc0000052-1491911889:762424..763412Clytia hemisphaericaexon
TCONS_00005369-exon-sc0000052-1491911889:761979..762030TCONS_00005369-exon-sc0000052-1491911889:761979..762030Clytia hemisphaericaexon
TCONS_00005369-exon-sc0000052-1491911889:761329..761522TCONS_00005369-exon-sc0000052-1491911889:761329..761522Clytia hemisphaericaexon
TCONS_00005369-exon-sc0000052-1491911889:760887..761036TCONS_00005369-exon-sc0000052-1491911889:760887..761036Clytia hemisphaericaexon
TCONS_00005369-exon-sc0000052-1491911889:759780..759910TCONS_00005369-exon-sc0000052-1491911889:759780..759910Clytia hemisphaericaexon
TCONS_00005369-exon-sc0000052-1491911889:759338..759672TCONS_00005369-exon-sc0000052-1491911889:759338..759672Clytia hemisphaericaexon
TCONS_00005369-exon-sc0000052-1491911889:759001..759052TCONS_00005369-exon-sc0000052-1491911889:759001..759052Clytia hemisphaericaexon
TCONS_00005369-exon-sc0000052-1491911889:758068..758261TCONS_00005369-exon-sc0000052-1491911889:758068..758261Clytia hemisphaericaexon
TCONS_00005369-exon-sc0000052-1491911889:757400..757549TCONS_00005369-exon-sc0000052-1491911889:757400..757549Clytia hemisphaericaexon
TCONS_00005369-exon-sc0000052-1491911889:756911..757198TCONS_00005369-exon-sc0000052-1491911889:756911..757198Clytia hemisphaericaexon
TCONS_00005369-exon-sc0000052-1491911889:755467..756526TCONS_00005369-exon-sc0000052-1491911889:755467..756526Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000052supercontigsc0000052:755467..765480 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
37.7047	41.658	47.325	45.349	6.69045	7.61653	3.41874	5.67791	10.7771	9.07087	4.14893	5.58018	3.26464	4.16671	6.61813	5.33636	11.8668	8.63597	1.83775	2.08746	7.80834	6.31977	17.7599	16.5142	3.10589	3.92922	8.69423	5.16175	10.798	10.1291
Blast
[Close]
BLAST of TCONS_00005369 vs. Swiss-Prot (Human)
Match: RPA12 (DNA-directed RNA polymerase I subunit RPA12 OS=Homo sapiens GN=ZNRD1 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.977e-25
Identity = 58/130 (44.62%), Postives = 75/130 (57.69%), Query Frame = 2 
Query: 2939 MNMTANEFSFSCDPNFCSVCGSILPLPVTGSDVLSCKLCSTSISVDSLEGIVIHSFKKFNQHKLKSSDEMERMKEMEESATNHGPVVKRECSKCHHKKMTYTTRQTRSADEGQTVFFTCLKCNFTETEYS 3328
            M++     SF  D +FCS CGS+LPLP    D ++C  C  +I+V   EG V+ +   F  H+L ++  M     +EE     GPVV R C +C H+ M Y TRQ RSADEGQTVF+TC  C F E E S
Sbjct:    4 MDLANTCSSFQSDLDFCSDCGSVLPLP-GAQDTVTCIRCGFNINVRDFEGKVVKTSVVF--HQLGTAMPMS----VEEGPECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEKEDS 126
The following BLAST results are available for this feature:
BLAST of TCONS_00005369 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RPA126.977e-2544.62DNA-directed RNA polymerase I subunit RPA12 OS=Hom... [more]
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