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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005367 ID=TCONS_00005367|Name=TCONS_00005367|organism=Clytia hemisphaerica|type=transcript|length=2370bpRun BLAST on NCBI protein sequence of TCONS_00005367-protein >TCONS_00005367-protein ID=TCONS_00005367-protein|Name=TCONS_00005367-protein|organism=Clytia hemisphaerica|type=polypeptide|length=555bp MGCMKLGRNPTFYSMMFLTTSFFFVEIIVGYMTNSMALVADSFHMLSDIIRun BLAST on NCBI transcript from alignment at sc0000052:712724..726530- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005367 ID=TCONS_00005367|Name=TCONS_00005367|organism=Clytia hemisphaerica|type=transcript|length=13807bp|location=Sequence derived from alignment at sc0000052:712724..726530- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000052:712724..726530- >TCONS_00005367 ID=TCONS_00005367|Name=TCONS_00005367|organism=Clytia hemisphaerica|type=CDS|length=15012bp|location=Sequence derived from alignment at sc0000052:712724..726530- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00005367 vs. Swiss-Prot (Human)
Match: ZNT10 (Zinc transporter 10 OS=Homo sapiens GN=SLC30A10 PE=1 SV=2) HSP 1 Score: 155.221 bits (391), Expect = 4.196e-40 Identity = 72/183 (39.34%), Postives = 117/183 (63.93%), Query Frame = 1
Query: 1018 MNMRGVYLHILGDALGSVIVIIAALIIKYFEGR------WTLYVDPGMSIIMVGIILKTSVPLLKESSTILLQHVPSHIQLKTLQEKLLVTFPEIRAVHEFHVWQLTGSRIVASLHVMFTSSDDYNELSTSMKKFFHKEGIHSTTVQPEFIEDEEHLGDENICLLA---CPDEECAEKVCCKP 1539
+N+RGV LH++GDALGSV+V+I A+I + W Y+DP ++++MV IIL ++ PL+KE++ ILLQ VP + ++ L KL P I +VHE H+W+L +I+A+LH+ + Y + ST +++ FH GIH+ T+Q E ++ +E L +++ LL C + CA+++CC P
Sbjct: 236 LNIRGVLLHVMGDALGSVVVVITAIIFYVLPLKSEDPCNWQCYIDPSLTVLMVIIILSSAFPLIKETAAILLQMVPKGVNMEELMSKL-SAVPGISSVHEVHIWELVSGKIIATLHIKYPKDRGYQDASTKIREIFHHAGIHNVTIQFENVDLKEPLEQKDLLLLCNSPCISKGCAKQLCCPP 417 HSP 2 Score: 112.079 bits (279), Expect = 6.979e-26 Identity = 57/112 (50.89%), Postives = 79/112 (70.54%), Query Frame = 1
Query: 301 GRNPTFYSMMFLTTSFFFVEIIVGYMTNSMALVADSFHMLSDIISLFVGFFAMRYSKM-TKGDVFTSNTFGWARAEVLGALVNSVFLVALCFSILVEAFKRLVEPEGLNDPD 633
G+ M+ LT +FF E++ GY+ NS+AL++DSF+MLSD+ISL VG A ++ T+G S T+G+ARAEV+GAL N+VFL ALCF+I VEA RL PE ++DP+
Sbjct: 6 GKTCRLLFMLVLTVAFFVAELVSGYLGNSIALLSDSFNMLSDLISLCVGLSAGYIARRPTRG---FSATYGYARAEVVGALSNAVFLTALCFTIFVEAVLRLARPERIDDPE 114 The following BLAST results are available for this feature:
BLAST of TCONS_00005367 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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