TCONS_00005359 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005359
Unique NameTCONS_00005359
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1060

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005359 ID=TCONS_00005359|Name=TCONS_00005359|organism=Clytia hemisphaerica|type=transcript|length=1060bp
gagaaaaatgtttcaaaaccaTCAACGTGATATCGTCTGTCTTTTCCTTC
TTTTACAATGTATCACGTTTGCGTCTCCGTATAATGTCGACCGTAAAAAA
ACTGGTGACGTCACTGTCGGCGTACCCACGTGTGATGGTGGAACGCGCGT
TGCTCAAAATGATTCAACGCGGTCGCACGAGTGTGTGAAAGAAATGAGTA
ACCCTGTCACAGgATGTGATTTTTGGATTGATGGAAGTCGTAATTTCGGT
GCCATCGACCAATCAGATATCGACTTACAAACACAATGGAAGATTGCTCC
ACAAAGCAATTTATTCCCATTCTGCCGATCTGACCGTCGGGCGGCAGTTG
GGTACGTAGAGTTACAAGATTATCCAAATTCATTCAAAGCTCCTATTTGG
AATGAGCGGTATGGGCGTGTCataaaagaaactttgaaattatctgTTAA
AAATGATTCGATGACTTTAGAAGCTCAGAAATTATTCCCAGGacatttat
tcaaaattttcgttGATTGTATTGATGAGCAAAATGTACGGTACCGAGAA
TCGAAAAATTGCGTTCTTTTCAAATATGTTGGTGAAAATAGATATCCGAT
CATAGCAAGTAGCTTGGGTGTCATCCCGACCACAACCGTTTCACCGACAC
CGACACCGACACCGACACCGACACCGACACCGACACCGACACCGACACCG
AAACCGACACCGAAAGCTGATGCACTGAAATCGGAAGATGATACCGATTG
GCTTTTAATCGGGATCCTTATCGGGATTTTGTtgttgattattttgattt
tattgattgtttgtttgatttgtAAACGAAGgAAAGACAAAAAACGACAA
GAAAAGGTGAGCAAAGCAGAAACAAAAGCTATTGAGCAAAACGTTTCGTA
CCGAGATAATCCAACATTCATGGTATTAGATGTGAACGAAAAGCCACAGA
ACAATGGTGGTCATGCTCCTCCAGAAAGTCCCACTGGAAAGATTCCTACC
AAAGGAACTGGCACTATCGACTCTCCGGACGGAAGCAAAATTACTTCGTC
CGCTTACTNA
Run BLAST on NCBI

transcript from alignment at sc0000052:649174..656775-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005359 ID=TCONS_00005359|Name=TCONS_00005359|organism=Clytia hemisphaerica|type=transcript|length=7602bp|location=Sequence derived from alignment at sc0000052:649174..656775- (Clytia hemisphaerica)
GAGAAAAATGTTTCAAAACCATCAACGTGATATCGTCTGTCTTTTCCTTC
TTTTACAATGTATCACGTTTGCGTCTCCGTATAATGTCGACCGTAAAAAA
ACTGGTGACGTCACTGTCGGCGTACCCACGTGTGATGGTGGAACGCGCGT
TGCTCAAAATGATTCAACGCGGTCGCACGAGTGTGTGAAAGAAATGAGTA
ACCCTGTCACAGGTAAGCTGCTAACAATCAGACAATGATCTTTGAACTTC
ATTAAGTACAAGACTTTCTAAATGACAAACTTTTTCCAAAATTTTACAAA
AAATGGTGTTTTCCTATTGAAGTATATGTAATCTCATACAAGAAGCATCT
TGTGCCACTTTTTGAATTTACTGATGTATTTGTTATAACCTTTCTTGAGT
GCTTGAGTACAAAATGAACTAAGGGTCTCGGTTCTAGTTTGCATTTCACT
CTGAATTAATTTTCTCTTTTTTCAGGATGTGATTTTTGGATTGATGGAAG
TCGTAATTTCGGTGCCATCGACCAATCAGATATCGACTTACAAACACAAT
GGAAGATTGCTCCACAAAGCAATTTATTCCCATTCTGCCGATCTGACCGT
CGGGCGGCAGTTGGGTACGTAGAGTTACAAGATTATCCAAATTCATTCAA
AGCTCCTATTTGGAATGAGCGGTATGGGCGTGTCATAAAAGAAACTTTGA
AATTATCTGTTAAAAATGATTCGGTAAGTAGAAACTCTCTAAACTTCGGA
AGCTTCCATTTATTTTCACAAAAATTAGTCTAAATCTTTAGAAATCCTTC
GTAAGTCGATTGTCATTTAGAGCCAAAATACCTTAACTTTGGAAATTTAC
CACGCTGGTTGCCCCAGTTTTTCTTGACCCACCACGCTGATATACAACGC
TAATTTTACGTCTCCCAACATTCTAGTTGAATTTTAGGCTTCTTGACTTG
ACAGCCGTATGTTTTTTATGATGTTTTTTATGAATGTTTTGAGTTATGTT
TTAGTCCTCTGTCTGGGGACAGACCTGAATATCTACACAAATTTCAAAAT
ACATTGCCAATGCTTACTTTATATATGTATTGATACAAAGTAAGAAGCAA
TGAAGTATAAGCCCGAAGGGCTAGAAGTGAATCTCCTTGGTAGGATTTGA
AGCCAACAAATCCTATGTAAATCCTACCAAATTTGCGCGGCCTAGCGTGG
CCCACCTAGCTTTTGCACAAATGCCAGATTGAAACTAAAATTTACCGCTA
AATATCGATAAAAATACCACTCAAAAACAAAGGAATCCGTCGTCCAAAAA
TACGGCGCATATTTTAAGACTTCACTTTTTCTTGCCTGAGAAAGGTTTAA
AGATTCGCTGCTAGCCCTTCAGGCTTATTCATCGGTAAGAAGTCCCGAGC
TAAATACTCAAAATATGATAATAATTTTGTACAATGTTTTGTTTCAGATG
ACTTTAGAAGCTCAGAAATTATTCCCAGGACATTTATTCAAAATTTTCGT
TGATTGTATTGATGAGCAAAATGTACGGTACCGAGAATCGAAAAATTGCG
TTCTTTTCAAATATGTTGGTGAAAATAGATGTAGGTGTTCTTCTGCGACC
AAATTATCCCCCATTTAGATAAATATTCCAACTTATTGATTCAAACTTCC
TCCATATTCATTAAATTTGATTTAAATTGGAGAAAGGTAAATCAAATTTT
CGCTTTACATGTCAAATATTTTGCCAATGAAATTATACTATTGTGACATT
GTGACGTGCCATGACACTCATAAGGTTCGGCCACGCGTGAGCATCGATCT
CCCAGTGTCGTTTGAATGTCATGGTATACGCCATGGCTCGGCAGCTCGCG
TCTGTCAAGTCGCAGTGTCTGTCAGGGCCGTGATTCTTACTCCTTCGTGG
GTAGGACCCATCCCGAATGCATCCGGAGGGCTCATTTCTAATCTAATCTA
ATCTTATACTATTATCATTTTTACAAGATTTTCTGACCCAATTATTCAAC
TCTTTATCATATTATCGTTTCTTTACCCGACACAGATCCTATTATAGAAA
GCACTTTGGGCGTCATTCCTACCACCCAACCACCACCTACAAACCCACCA
ACGACAACAGTAGCAACCACCGCTTCACCTTCTACAAAACCTACCACCAC
TACACCCAAACCTGAACCATCGCATAAAGTCGACAGAAACGAAAATGGAG
ACTCTATTCCTGGTGCAGCCGCATGCGACGGTACCTACGTCACGCGTAAC
GATTCCACGCGGTCGCATGAGTGCTTGAAACAAATGAATGATCCTATCAC
AGGTAATTTACAGAGAATTTTCTTTATTTCTTTGTCCGTAAGTTTACCGT
CAAAAAGCTCCATAGAGCAAGTATTAATGGAGAAAAATATTGTAGGGTGT
TTCTATAGACCTTATCGGATTTTTGGATTTTTCTTAAAAAACGATGCATT
GTGGGATTGTTTCGAGTGTATTACAATAGAATTCCCTCGAGGAATTCCTA
AGAGATTTCTATTGTAATACACTCGAAACAATCCCACAATGCATCGCTTT
TTTAGAAAAATCAAAAACTCCGATAAGGTCTATTGTTCTGTCTCAAGTCA
GAATAAATTGATTTTGACTGATTTTGCGATAGGCGCCACTTTTGACAGAA
AATACTCTAATAGATCTTTTCATAAATTACGTCACAACCATCACTTGCCT
CGTATTCAAACAATTACCATGGTGATTACGTCCCTTGAGATATTAAATGA
TTACTAGAAAATTAAATAGAAAGTAGTTTTGATAAAATCCACTGGGAGTT
AACCACCTTGGCAATAATTTCAAAACGAGGCAAGTGATGTTCGTGACGTA
ATTTATGAAAGGGTCTATTGCAGGTGCTTCTCTTGTCCAGTTGTCTTGTG
TGATATGCAATAAATATTACTCCAATAGGCTGTGACTATTTGATCAATGA
CAGCAATGCATTTGGTACAATCGACCAATCAGATATCGATTTACAAACAC
AATGGAAGATTGCTCCACAAAGAAGTCTATTCCCATTCTGTCTTTCTGGC
CGTCGAGCGGTAGTTGGGTACGTGAAATTACAAGATTATCCGAATTCGTT
GAATGCTCCTATTTGGAACGAAGAATATGGACGTGTTATCAAAGAAACCT
TGAATTTCACCACTGGAAATATGTCGGTAAGAATTAACTCTTGAAAATTA
AGGATTTTTAAAGCTACAACGAGCAACGATACGTGCATCTTTAAGTGCAA
TTTTCCCAGCTTCAGCTTAAACAAATTAGGTCATATTTATTTAGTTGAAA
ACCCCCTTTTCAAGATCTATCACTGTCTGTTTGAATATGAATATGTTAGA
AGAATATGTTTTTACTGTCCATTTCCAGATGACTATAGAGGCTCAGAAAT
TATTCCCAGGACATCTAATCAAGATTTTCATTGATTGTATTGATGAGCAA
AACGTACGGTACCGAGATGAAAAAAGTTGCGTTCTCTTCAAATTTGTCGG
CGAAAATACTTGTAAGTATTAACAAATCACGAAATATGAGTGTGGATGTA
ATATAGGGGAACCACTCGGTATAATGCTTTTATTATATATTCTATCGAAT
ATTTCCATGTCAGTTTGATCAATGTGAATTCTCATGAGCCTCAAACGCAC
GATTTTCTCAAAGCATCATGATACTTCTCTTTCCGTTGGTATAACCATGA
ACTCTGGATTCTTGGTACCGTACCAGATCGTCTACACAAGATCACTAACC
ACTCCACCACCACTATCTTTTCCCGTAAACCACCGTGAAGGCTGTAAATT
CTACGGTTCAATTACCATCCCTCTAACGGACGATAGCTTCGTCTTGATCT
TGCTACGACCTGTGCTTACCACTTCCCCATGAATATTTTCCATGAAATAA
AAAAATTGTCTTGGACTTCAATTTCAAAGGGCAAAATCTCGTAATATAAG
ATTTATGAGGGACTTAAGGAAAATGAAGTCCTCCAAAATGTGAACCTCAA
GCCTTCCTTTTCTTTTTCCCAATGCAGATCCGATCATAGCAAGTAGCTTG
GGTGTCATCCCGACCACAACCGTTTCACCGACACCGACACCGACACCGAC
ACCGACACCGACACCGACACCGACACCGACACCGAAACCGACACCGAAAG
CTGATGCACTGAAATCGGAAGATGATACCGATTGGCTTTTAATCGGGATC
CTTATCGGGATTTTGTTGTTGATTATTTTGATTTTATTGATTGTTTGTTT
GATTTGTAAACGAAGGTAATGTTTTGTTTATTTCAATGTTACAGTTGAGT
CTCCATAACTCGAACACGCAGGGGAAGTATACAAAAGTTGTTCGAGTTAT
AGAGGAGCAAAAGAGACTCTACTGTACTTATAAGTAAATTTTGCGGTCTC
AGAAACTCTACTTTCAATAACAACTACTGGAGAGTAAAGGAGGGCGCAAC
GTCCTTTCCCTCTGGGTTGCTCTTCTTACTCTTGGTTATTTTGTTAAAAG
ACACCGAGCACTTTTTTAAACCTCCATAAAACCAAGCTATGAGTCGAACC
CATAGATAAACCATGCCTAACTAAATTCGCTACCTATTGAAACTAATTTT
TTTATATCATTTTATTATTTCAGGAAAGACAAAAAACGACAAGAAAAGGT
TACTTTACTTCTCATACGATTTTGGCTTAGAAGCGAGGGGTAAATCACTT
CGAAAAAAGCGTACGAAATGATTTTTGATTTTTGATTTTTTTGTGATTTT
TTTGTGATTTTTTTGTGATTTTTTTGTGATTTTTTTGTGATTTTTTTGTG
ATTTTTTTATTTTTTTGTGATTTTTTTGTGATTTTTTTATTTTTTTGTGA
TTTTTTTGTGATTTTTTTGTGATTTTTTGATTTTTTGATTTTTTTTGTGA
TTTTTTTCTATGATTTTTTTGTGATTTCTTTTTGATTTTTTGATTTTTTT
CTGTGATTTTTTTTTTTTTTTTTTTTTTGTTTTTTTTGTGATTTTTTTTT
ATGATTTTTTTGTGATTTTTTTATTTTTCTGTGAATTTTTTATGATTTTT
TGATTTTTTTCTGATTTTTTTGTGATTTTTTTATTTTTCTGTGAATTTTT
TATGATTTTTTGATTTTTTTCTGATTTTTTTGTGATTTTTTTATTTTTCT
GTGAATTTTTTATGATTTTTTGATTTTTTTCTGATTTTTTTGTGATTTTT
TTATTTTTCTGTGAATTTTTTATGATTTTTTGATTTTTTTCTGATTTTTT
TGTGATTTTTTTATTTTTCTGTGAATTTTTTATGATTTTTTGATTTTTTT
CTGATTTTTTTGTGATTTTTTTATTTTTCTGTGAATTTTTTATGATTTTT
TGATTTTTTTCTGTGATTTATTTGTGATTTTTGTGATTTTTTTGTGACTT
TTTGATTTTTCTGTGATTTTTTTGTGACTTTTTGATTTTTCTGTGATTTT
TTTGTGATTTTTTGATTTTTTTGTGATTTTTTGATTTTTTTGTGATTTTT
TGTGATTTTTTTGATTTTTTTGTGATTTTTTTATTTTTCTGTGAATTTTT
TATGATTTTTTGATTTTTTTGTGATTTTTTTGTGATTTTTTTGTGATTTT
TTGATTTTTTTGTGATTTTTTTGTGATTTTTTTGTGATTTTTGGATTTTT
TGATTTTTTTTGTGATTTTTTTCTATGATTTTTTTGTGATTTCTTTTTGA
TTTTTTGATTTTTTTCTGTTATTTTTTTTTTTTTTTTTTTTNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNTTTGTGATTTTTTTGTGACTTTTTGATTTTTC
TGTGATTTTTTTGTGACTTTTTGATTTTTCTGTGATTTTTTTGTGATTTT
TTGATTTTTCTGTGATTTTTTTGTGATTTTTTGATTTTTTTGTGATTTTT
TTGTGATTCTTTGATTTTTTTGTGATTTTTTGTGATTTTTTGATTTTTTT
GTGATTTTTTTATTTTTCTGTGAATTTTTTATGATTTTTTGATTTTTTTG
TGATTTTTTTGTGATTTTTCTAAGAAGTGTACGAGATTTTTTCGAGTAAT
TTACCCCTCGCTTAGAAGTGGCCCACAATAATTGGGTTTTTGCTAAAAGC
CAGTGTCTTGTTTGAAGCTAATTCAAATATATATTCATGATATGCACTAT
ATTCAATGTCTTCTGACATTACATCAATAAAATTGGTTGTAAGGGCCGTA
AAATTGGTCAATACGTTACTTACAACCAATCAGCTGTTCGGTCCGTGGGA
AGACAATGGTGCATATCATGAAAAGTGCACGATGCTATCGTCCTTTACTG
GAGGGATAGTAAAGAAAGAAAAATATATACGCGATAGGAGTTTTCTGCCG
TCTGCTGTAAACTCGTTTCGGAAAAAAAACCCGTTAGCAAATTTTTTCGG
CTTTGAGCTTATTTCTTTGATAGTGATTTAGAAAATGTTTTTCATAAGGT
CAATCGACAAATAAATAACAAACAAAGCCTGGTGACGAGTTGCTTATACT
CTATATTTGTTCACATTCTTTAGGTGAGCAAAGCAGAAACAAAAGCTATT
GAGCAAAACGTTTCGTACCGAGATAATCCAACATTCATGGTATTAGATGT
GAACGAAAAGCCACAGAACAATGGTGGTCATGCTCCTCCAGAAAGTCCCA
CTGGAAAGATTCCTACCAAAGGTTCGTTGAAGCACTGTTTACTCACTCAA
GTCATTTGATTCTCAATATGCGATAGTCATTTTTCTAACAAAAAACACCC
GAAAAAAGCCGGGATTTTAACCCCTGTCTTTTAAAAAATAGAAACACGAT
GGTCAAAATCTAGCTTTTTTTGAGTGCTTCTGTTAAAAATATGACGCCAT
CTTGACTTACACATACCAAGAATTTTCTGAATTTTCTGAATTTTTCTGTA
TGATTTGAACTATTAATGAATTTATGTACCGGAGGATATCGAGGGCGACG
GTAAGTGAAGTGGGTGCAAAACAAAGTCGATAGTTGATGTACGGCTTTAC
TCACCTAAACAGACGACGGTATTTTGGTGTTTTTAACTTCCTCGAACAAA
GTGGATGGCGATTTTGGGGACATGTCAACTTTACTTTATACCGTCTCCTT
CGATTTCTTTCGGATACATAAACTCGATATTCTTCAGGTCAAGAGCTCGG
GTTATCATCCCGAGACCATAAAAGAGAGAAACAGAACAAGACTTCAATGT
TTTAGTTCGAATTATAGAAAGATTTGAACAACAGAGGTTCGAATAAGAGA
GAGTTCATTATATAATATTTGAAATTCATTTTTTTTCATCTTATAGGAAC
TGGCACTATCGACTCTCCGGACGGAAGCAAAATTACTTCGTCCGCTTACT
NA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003043XLOC_003043Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005359-exon-sc0000052-1575043694:656564..656775TCONS_00005359-exon-sc0000052-1575043694:656564..656775Clytia hemisphaericaexon
TCONS_00005359-exon-sc0000052-1575043694:656053..656300TCONS_00005359-exon-sc0000052-1575043694:656053..656300Clytia hemisphaericaexon
TCONS_00005359-exon-sc0000052-1575043694:655196..655328TCONS_00005359-exon-sc0000052-1575043694:655196..655328Clytia hemisphaericaexon
TCONS_00005359-exon-sc0000052-1575043694:652511..652748TCONS_00005359-exon-sc0000052-1575043694:652511..652748Clytia hemisphaericaexon
TCONS_00005359-exon-sc0000052-1575043694:652128..652152TCONS_00005359-exon-sc0000052-1575043694:652128..652152Clytia hemisphaericaexon
TCONS_00005359-exon-sc0000052-1575043694:649855..650002TCONS_00005359-exon-sc0000052-1575043694:649855..650002Clytia hemisphaericaexon
TCONS_00005359-exon-sc0000052-1575043694:649174..649229TCONS_00005359-exon-sc0000052-1575043694:649174..649229Clytia hemisphaericaexon
TCONS_00005359-exon-sc0000052-1510915933:656564..656775TCONS_00005359-exon-sc0000052-1510915933:656564..656775Clytia hemisphaericaexon
TCONS_00005359-exon-sc0000052-1510915933:656053..656300TCONS_00005359-exon-sc0000052-1510915933:656053..656300Clytia hemisphaericaexon
TCONS_00005359-exon-sc0000052-1510915933:655196..655328TCONS_00005359-exon-sc0000052-1510915933:655196..655328Clytia hemisphaericaexon
TCONS_00005359-exon-sc0000052-1510915933:652511..652748TCONS_00005359-exon-sc0000052-1510915933:652511..652748Clytia hemisphaericaexon
TCONS_00005359-exon-sc0000052-1510915933:652128..652152TCONS_00005359-exon-sc0000052-1510915933:652128..652152Clytia hemisphaericaexon
TCONS_00005359-exon-sc0000052-1510915933:649855..650002TCONS_00005359-exon-sc0000052-1510915933:649855..650002Clytia hemisphaericaexon
TCONS_00005359-exon-sc0000052-1510915933:649174..649229TCONS_00005359-exon-sc0000052-1510915933:649174..649229Clytia hemisphaericaexon
TCONS_00005359-exon-sc0000052-1491911889:656564..656775TCONS_00005359-exon-sc0000052-1491911889:656564..656775Clytia hemisphaericaexon
TCONS_00005359-exon-sc0000052-1491911889:656053..656300TCONS_00005359-exon-sc0000052-1491911889:656053..656300Clytia hemisphaericaexon
TCONS_00005359-exon-sc0000052-1491911889:655196..655328TCONS_00005359-exon-sc0000052-1491911889:655196..655328Clytia hemisphaericaexon
TCONS_00005359-exon-sc0000052-1491911889:652511..652748TCONS_00005359-exon-sc0000052-1491911889:652511..652748Clytia hemisphaericaexon
TCONS_00005359-exon-sc0000052-1491911889:652128..652152TCONS_00005359-exon-sc0000052-1491911889:652128..652152Clytia hemisphaericaexon
TCONS_00005359-exon-sc0000052-1491911889:649855..650002TCONS_00005359-exon-sc0000052-1491911889:649855..650002Clytia hemisphaericaexon
TCONS_00005359-exon-sc0000052-1491911889:649174..649229TCONS_00005359-exon-sc0000052-1491911889:649174..649229Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000052supercontigsc0000052:649174..656775 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0.272072	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005359 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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