|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005352 ID=TCONS_00005352|Name=TCONS_00005352|organism=Clytia hemisphaerica|type=transcript|length=3169bpRun BLAST on NCBI transcript from alignment at sc0000052:518059..530044- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005352 ID=TCONS_00005352|Name=TCONS_00005352|organism=Clytia hemisphaerica|type=transcript|length=11986bp|location=Sequence derived from alignment at sc0000052:518059..530044- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00005352 vs. Swiss-Prot (Human)
Match: KPCD (Protein kinase C delta type OS=Homo sapiens GN=PRKCD PE=1 SV=2) HSP 1 Score: 654.825 bits (1688), Expect = 0.000e+0 Identity = 343/702 (48.86%), Postives = 452/702 (64.39%), Query Frame = 1
Query: 61 FIRIKLIEAEAGSEVWKECESQGKTWDPFVGIHIKEAVDVPGQGIQLVQKKKTIYPDWNRCFDTHLYEGRMITLVVMNKNDSGSVTGDATVGVHFLADQCKKNGGLNTSTVSLDLRPHGKLSVQVRHFSETADDPNSGALDGKTLANKSELQARRGAVRKAKVHEIKGHQLIAKFFRQPAFCSVCNQFMWGFNKQGYQCSSCAMAAHKKCHDKILFQCTQSAADSQGTMKMKERFNINMPHRFIGKTYLSPSFCDHCGSMLYGLFRQGLKCEACNMNVHHKCKEKVPNLCGINQILFSEAMKSIENKKKRD------------SSISEDDGDEVTTMEDESALYESVWEDIKPAPPARTSSIRPGTRKKRYDISDFKFLKVLGKGTFGKVILAEVPSENNXXXXXXXXXXXXXXXXXXXXXXXXXRRVLALSTRHPYLTHLMATFQNESHLFFVMEYLNGGDLMFHIQKEGKFIENRARFYGAEIICGLQFLHSHDIVYRDLKLDNVLLDREGHIKIADFGMCKEEMTEGLKTSTFCGTPDYIAPEILKGHRYDSATDWWSFGVLLYEMLIGQSPFAGEDEDDLFASICRDRVFFPKWISEAAISVLNGLLERNISLRLGYSWGTKPHIRKHPFFSPIDWNKLEKREIKPPFKPEVKANNAVNNFDPDFTMEAPKLTPTDADLLKSMDQVQFKGFSFINPAF 2130
F+RI E GS +++ + PF + +KEA+ +G LVQKK T+YP+W FD H+YEGR+I +V+M + + TVGV LA++CKKN G + LDL+P K+ + V++F E D S + + K RRGA+++AK+H IK H+ IA FF QP FCSVC F+WG NKQGY+C C A HKKC DKI+ +CT +AA+S+ T+ KERFNI+MPHRF Y+SP+FCDHCGS+L+GL +QGLKCE C MNVHHKC+EKV NLCGINQ L +EA+ + + R + G M+D S Y +WE G+ K +I++F F KVLGKG+FGKV+L E+ K V+++DD + +RVL L+ +P+LTHL+ TFQ + HLFFVME+LNGGDLM+HIQ +G+F RA FY AEI+CGLQFLHS I+YRDLKLDNVLLDR+GHIKIADFGMCKE + + STFCGTPDYIAPEIL+G +Y + DWWSFGVLLYEMLIGQSPF G+DED+LF SI D +P+WI++ + +L L ER + RLG + +I+ HPFF I+W LEKR ++PPF+P+VK+ +NFD +F E +L+ +D +L+ SMDQ F GFSF+NP F
Sbjct: 4 FLRIAFNSYELGS-----LQAEDEANQPFCAVKMKEALSTE-RGKTLVQKKPTMYPEWKSTFDAHIYEGRVIQIVLMRAAEEP--VSEVTVGVSVLAERCKKNNG--KAEFWLDLQPQAKVLMSVQYFLEDVDCKQSMRSEDEA---KFPTMNRRGAIKQAKIHYIKNHEFIATFFGQPTFCSVCKDFVWGLNKQGYKCRQCNAAIHKKCIDKIIGRCTGTAANSRDTIFQKERFNIDMPHRFKVHNYMSPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKVANLCGINQKLLAEALNQVTQRASRRSDSASSEPVGIYQGFEKKTGVAGEDMQDNSGTYGKIWE---------------GSSK--CNINNFIFHKVLGKGSFGKVLLGELKGRGEYFAIKALKKDVVLIDDDVECTMVE-KRVLTLAAENPFLTHLICTFQTKDHLFFVMEFLNGGDLMYHIQDKGRFELYRATFYAAEIMCGLQFLHSKGIIYRDLKLDNVLLDRDGHIKIADFGMCKENIFGESRASTFCGTPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIGQSPFHGDDEDELFESIRVDTPHYPRWITKESKDILEKLFEREPTKRLGVT----GNIKIHPFFKTINWTLLEKRRLEPPFRPKVKSPRDYSNFDQEFLNEKARLSYSDKNLIDSMDQSAFAGFSFVNPKF 670 The following BLAST results are available for this feature:
BLAST of TCONS_00005352 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.