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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005348 ID=TCONS_00005348|Name=TCONS_00005348|organism=Clytia hemisphaerica|type=transcript|length=337bp
AGCCACGCCGGATGATCCAAATTCTCCAAATATCTATTCGATTATCCCAC
CAATGGAGAACTTCATAGAATATAAATGCAGAAGCGATGTAGATTTTAAA
CATAAACAATTTTGGGTAACTGGTGATTTCACACCACCGACAAATCATAC
GAATCAAGAAACAGATCTTATACAAAAGAGCATGGAGGAATTGGTGTTCG
CTTTTGAGGAAAACGTGATACCAAAAATCGTCACTGGTGGCGACAATGAA
TACATCGTTTGGGATGCTGTTGACAACCTTCATGTTAATTCCCTTGTTAT
TGTTTCTATTAGTATTGGAATGTACGAAACAACAGGT Run BLAST on NCBI transcript from alignment at sc0000052:496425..499957- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005348 ID=TCONS_00005348|Name=TCONS_00005348|organism=Clytia hemisphaerica|type=transcript|length=3533bp|location=Sequence derived from alignment at sc0000052:496425..499957- (Clytia hemisphaerica)
AGCCACGCCGGATGATCCAAATTCTCCAAATATCTATTCGATTATCCCAC
CAATGGAGAACTTCATAGAATATAAATGCAGAAGCGATGTAGATTTTAAA
CATAAACAATTTTGGGTAACTGGTGATTTCACACCACCGACAAATCATAC
GAATCAAGAAACAGATCTTATACAAAAGAGCATGGAGGTATATTCGAACA
ATAAACTTCAAATTAGCTACCTTATTACACGAATATTACTAGGTAAGTAT
TAACGGCCTTGAAATTAACACGCAAAAAATTAACACGAATTTTATTTGCT
TTTTCAAGGACACCACGGCTGGTTTTCATTAAGAGGGTTTTTATTAACAC
GAAATTTTTCAATTCGTGTTAATAAAATGACTAGTAATATTCGTGTAATA
AGGTATGCTCACTTCTAATTTCGACATCCTTCATTAAAGAGGGATAATAG
GAAGGTCGGAAAAACTGATGGACTCCTCAACTGATTGCTAAGCAAAGAAA
ATTAGTTTTAATCAGCGATTCCGACCNAGAATAATAGGAAGGTCGGGCTC
ACTGGAGTGACTCTGATTGCTAAGCAAAGAAAATTTTTTTAATCAGCGAT
TCCGACCTTCCTATAATTCCTATCTGTAAAGCAGGGTGATGAAATTAGAA
GCGAGATGTTGATATTAGACCAACTTACGGTATTAAGTGAATCAAGAACA
GTATTCCAAAACTCCTGTCAACAATTATATAAAATTACAGCTTTCTCTCT
CTGAAAGTCTCTTAAGGGCTCTGACCATAGTGAATTTTTCATAATTGCCG
TGTTTAAAATGTGTTTTCTGACTGATGTAACCAACAAAACTATGGCATGT
TATACATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACATTT
TCTGTTAGACAAACTATTCCTGAATCTGAAAATTCAAAAATTGCATTGAA
AAAATTTGATGAAGAAGAAAATGAAGACTTTTGTGAGGAAGTGTATTTCA
ACTTTGAAGAGCTTAGTTTGGGCGAAGAAAAAACATTTTGAAAATTTTTT
TGAAGTAGATGGTGTATCTTTTAACGAACAATAAAAATTTTTGCGGAAAA
TTTTTGTAAATGCTTCTTTGTCTCGAAATCTTCAAAATAGTGGTTTTCAT
CAAATCTTATCTGGATTTTCCTTAAAAAAAAACAGTCAAAACTTTTGACA
CATCTTTCTAGAAAAATTTTCCGCAAAATTTAAAATATTTCAATTCTTTG
CGGACAGTGTAAAGAAATTTTGAAACGAAAAAGTTAATTACCCATTAAAA
CTAAGCATTTTTTTGTAAAAGAGGGTGATGCAACATATTATTAACATCTT
TTTAAAGTTCATAGCGTCATTTTTGCAATTAAGTTCTAAATTACTCTTAA
GGGATTCGATTAAAAAGCAATTTATAAAGACAATTCTTTGTTACAAGTGT
TAAGGAACCTGAAATATAACTTTTATGTTCAAATACCAAAATCAATTTTT
GAACTATGGTCAGAGCCCTTAAGTGGATTTCTCTTTGACGGGGACACTGA
GAATAACTTCGAATTATAAAAAAATTCGAATAGTAGAAGTTTGAATAAAC
GAGATTCTACTGCGCTCTTCTTTGTAAAAATCTTCATCAATACACGTTTT
TTTATAAGAACAAACTATAAAAGAACATAAGGCTTCGATGGCAAAAATGT
TAAGAACAAGTTAAGAACATTTTAAGGCTTTGCAGACTCTAAAACACCAA
ATTTTTTAGGAAAATGGACCAAAATACTTACAAAAGAATGAAATTAAGAA
CATGTTAAGAACATTTTTAGGCTTAAAACTCAAAAAGTTAAGAACATCTG
AAGGTTTAAAATTTTTGGATGTTCTTATAAAAAACATTTAATATCATCTC
GATTTTGAAATTTTCAGATCAAGGAAGAGATAACCTAATAGAAAATTGAT
CAACAAAAGAAGCGCTTCTTCTATAAAAATATTTAACTAAAGAATGTCTT
TAAAAGTTTTATTTTTAAATAAGAGTGATATCGTTTGCTTACTCATCAAT
TTTAACTTACAAGCTTTTTCATATTGAACTAACATGGATGTGGAGCAAGA
TTGGTCAGAAAGTGGATTTATATTTTATTTATATATCATATTTTTCCTTA
TAATGTTCCTCTAACACTAGACTTAAAGGTTTTGTTTTTACATAAGTGTT
CCCGTTTCATATCAGACACATATTTCATATCAGGACAGTGTCTCCCTATT
GTTTTATTATGCTTATATAAGCAAAAAAATGCTTTCTTTTCCTTTTTTTT
AACTAATCTTGCTCCACATATGTGTCAGTTCAATGTGAAAAAGCTTGGAA
CTCAAAATTGATGAGTAAGCAAACGATATCACCCTTATTTAAAAATAAAA
CCTCTAAAACTTAGGTTCAAAAAAGGTCCAATAATGCTCAGAATTTAGCC
TGGAAGGCCATAAACCCCTCCCAAACTACAATATTATTCGATTACATCTA
ACAAATAACCCATAAGTGACTTTCTCGCCCAAACTTCAAATTTCAAAAAA
AGGGGATGTAATATTCGAGCCAATCGCATGCGGTTGCGTCCCACCAAAGA
TGCTACACGGTTCCTAAGGGTTTGCCCTTACTACTATACAGAAATTTTTG
ATCATTCTAAAAATACAGTGGATTCTTTTAAATTCGAACCTCTATAACTC
GAATGTCTCCTTAACTCGAACAAGTTTTCTAGTCCCTTCAGTCAACAATA
TCCCTACCCGGGCCCACCCCAGCGGTTTGCGTGAATGCGTGAATGGGCAT
TTTCGGTTGCGTGAATGCGTGAAAATTGGAAAAAGAATGCGTGAATGCGT
GAATTGAAAAAATTTGCGTGAACGTGAAAATTTTCACTTTTTGATTGCTT
GAATGCGTGAATCTGGGCTATTTTGTGCGTGAATACGTGAATTTTCCCTT
TTTTCCACCGACCATGTGCAGTTTTCCCGATTTTCCAATGTTTCACCGAT
TTTTCCCGAAAATTTCCCGATTTCCTGAAAAATCGGGTTATTACATGAAA
CTCGAGGAAAATTTGCGTGAATGCGTGAGTTTTGAAAAAAAATTGCGTGA
TTGCGTGAATTGAGGGTCCGCTGGGGGGGCCTCCTACCCTACTCTTTTAA
CTCGAAATTTCCTTAACTCGAACAAATTTGTGCGTGTTCGAATTATGGAG
ACTCCATTGTATTATATTTCATATGAAAAACCTATGCAGATGGAAATTTG
AGCTTTAAAGTTGAAATTATTTCAATATTTCAGGAATTGGTGTTCGCTTT
TGAGGAAAACGTGATACCAAAAATCGTCACTGGTGGCGACAATGAATACA
TCGTTTGGGATGCTGTTGACAACCTTCATGTTAATTCCCTTGTTATTGTT
TCTATTAGTATTGGAATGTACGAAACAACAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005348-exon-sc0000052-1575043694:499771..499957 | TCONS_00005348-exon-sc0000052-1575043694:499771..499957 | Clytia hemisphaerica | exon |
| TCONS_00005348-exon-sc0000052-1575043694:496425..496574 | TCONS_00005348-exon-sc0000052-1575043694:496425..496574 | Clytia hemisphaerica | exon |
| TCONS_00005348-exon-sc0000052-1510915933:499771..499957 | TCONS_00005348-exon-sc0000052-1510915933:499771..499957 | Clytia hemisphaerica | exon |
| TCONS_00005348-exon-sc0000052-1510915933:496425..496574 | TCONS_00005348-exon-sc0000052-1510915933:496425..496574 | Clytia hemisphaerica | exon |
| TCONS_00005348-exon-sc0000052-1491911889:499771..499957 | TCONS_00005348-exon-sc0000052-1491911889:499771..499957 | Clytia hemisphaerica | exon |
| TCONS_00005348-exon-sc0000052-1491911889:496425..496574 | TCONS_00005348-exon-sc0000052-1491911889:496425..496574 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000052 | supercontig | sc0000052:496425..499957 - |
Blast
The following BLAST results are available for this feature:
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