|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005343 ID=TCONS_00005343|Name=TCONS_00005343|organism=Clytia hemisphaerica|type=transcript|length=1633bpRun BLAST on NCBI transcript from alignment at sc0000052:382486..404712- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005343 ID=TCONS_00005343|Name=TCONS_00005343|organism=Clytia hemisphaerica|type=transcript|length=22227bp|location=Sequence derived from alignment at sc0000052:382486..404712- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00005343 vs. Swiss-Prot (Human)
Match: G6PT3 (Glucose-6-phosphate exchanger SLC37A2 OS=Homo sapiens GN=SLC37A2 PE=2 SV=2) HSP 1 Score: 122.479 bits (306), Expect = 7.255e-30 Identity = 107/407 (26.29%), Postives = 189/407 (46.44%), Query Frame = 3
Query: 201 QVLGWLDSCYLLPYAFFSIIYGNLGDKYGNRKILTCCLICMGL--SMISFGYWSSPMA---FGILLFINGSAQANLWSNCVKSLSDWYEPEKRATIFGIWGTCIFAGGIMGTTLAVQLQKAFPGEIKMVFVVPSIWVIILAVVVYIFL-RSPTEVRVPVVQTDKESLLPVAEQTLPTQRNLNILET------------------------WRLRMVPELCWTMFGMKLVRYCLYMWLPMYLNQNLNYSKAEAGMFSTLYEIGGVVGSASIGLFIDKVM-RGNTYMGVFVLLTLSTSALCLFQLTSQCGMVMNAIFLFLAGAGSSGPDAVISGSLAVEIGTREN------AQSAVSGLINGFGSLGAILEGPFIAMVLTYFGWSGTFYVMVLLTFLSAISIARPAFQK 1310
++LG +D+ +L+ YA I G G++ R L+ ++ GL S+ GY+ + F ++ NG Q W + V + +W+ KR I GIW + G I+G+ +A G+ + F+VP I ++ V+ ++FL P +V Q E P +I E+ R+ V E + KLV Y WLP+Y+ ++S EAG STL+++GG++G GL D R T V+L L+ + L+ Q G+ + + L + G +GP A+I+ +++ ++GT ++ A S V+ +I+G GS+GA L GP +A +++ GW+ FY+++ L+ + + R +++
Sbjct: 85 ELLGGVDNAFLIAYAIGMFISGVFGERLPLRYYLSAGMLLSGLFTSLFGLGYFWNIHELWYFVVIQVCNGLVQTTGWPSVVTCVGNWFGKGKRGFIMGIWNSHTSVGNILGSLIAGIWVN---GQWGLSFIVPGIITAVMGVITFLFLIEHPEDVDCAPPQHHGEPAENQDNPEDPGNSPCSIRESGLETVAKCSKGPCEEPAAISFFGALRIPGVVEFSLCLLFAKLVSYTFLYWLPLYIANVAHFSAKEAGDLSTLFDVGGIIGGIVAGLVSDYTNGRATT---CCVMLILAAPMMFLYNYIGQDGIASSIVMLIICGGLVNGPYALITTAVSADLGTHKSLKGNAKALSTVTAIIDGTGSIGAAL-GPLLAGLISPTGWNNVFYMLISADVLACLLLCRLVYKE 484 The following BLAST results are available for this feature:
BLAST of TCONS_00005343 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.