TCONS_00005330 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00005330
Unique Name	TCONS_00005330
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1569

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000052:277662..283711-

transcript sequence

>TCONS_00005330 ID=TCONS_00005330|Name=TCONS_00005330|organism=Clytia hemisphaerica|type=transcript|length=1569bp
TAGATATATCATAAAGCAATATGTCAGGAGGTCTGGAACAGAAGACACTA
ACAGCCGCTGATTGGTCAATTATTGGGATTTACTTTGCAATATGTTTGGG
TCTTGGTGTTTATTCCAAGTTTGGGAAGAACAAAAACAACACAGCAGAAG
AATATTTCTTGGCTGGTCGCTCCATGATGTGGTGGGCTGTTGGTGGTAGC
TTGTACGCCAGTAATATGGGATCTGAGCATTTCATTGGATTGGCAGGATC
AGGTGCAGCCAGTGGAATCGGAGTGGTCGCTtatgaatggcatgccagtt
gGATTCTCCTCTTACTTGGCTTCTTTTTCGTTCCCATTTACATCAGATCA
AAGATTTACACCATGCCCGAATACTTACGTAATCGTTTCCAGAGTAAATG
GATGCGTATTTATTTGACGGTCGTTTCACTCATCAGTTATATCACCACAA
AAATATCGGTGGATTTATTCGCTGGAGCGCTTTTCTTACGTGAAGCTATT
GGATTGAATATTTACATTTCTTCTGCTGCTTTACTGGTTTTCACCGCTCT
TTATACATTGCTTGGTGGTCTGTCGGCCGTCATTTATACTGACGTCATGC
AATGCACATTGATGGTGATCGGAGCACTATCACTTTCGATATTGGGTTTC
AAAGAAGTTGGTGGTTTAGAAGGATTGTGGGAGAAATACCCAAAAGCCAT
TGGTTCACCATTGAATACAACGATGTTAATGAATGCTACTGATAATGCAA
CTTTAGGATGTTATGGAAGTGTTGAGACGTATTGGGGTAACATGTTCAGA
CCATACGATGATGGTGAATTTCCATGGCCAGGAATTATCTTCTCGCTTCC
AATCACTGGAATATGGTACTGGTGTACTGATCAGGTGATTGTACAAAGAA
CCTTAGGAGCCAAGAACATGGTACAAGCTCGTTTGGGAACAATCGTTGCT
GGATTCCTCAAACTTCTTCCTCTCTTCATCATGGTAATGCCGGGAATGAT
TAGCCGTGTTTTATATGCAGATCGAGTGGCTTGTGGAAGTCCAGAAGCAT
GTTTTGATTTCTGTGAAAACAAATATGGATGCTCCAATCAAGCTTACCCA
CTGTTGGTATTGAACATTTTACCATCAGGTTTGGTTGGGTTAATGCTTGC
GGTAATGGTGGCAGCATTGATGTCATCCCTCTCCTCAGCCTTCAACAGCT
CTTCTACCATCTTTACAATGGATATTTGGCGAGTGTTGCGACCGAAAGCC
AACGATAAAGAGATGTTGATGGTCGGTCGTGTTGTGGTCGTTGTCATGGT
CGGCATCGGTATTGCATGGATGCCCAATGTTTCACAGGGTCATTCAGGGC
AGTTGTTCACTTACTTGCAAACTATTCAATCGTATCTTGCACCACCGACA
TGCGCCGTCTTCTTGGTCGGCATGTTGTGGACCGGCCTGACGGAGGTCGG
TGCATTGAGCAGTATGTTGTTCGGGTTGGTGTTCGGTATTGTGCGTATCT
CTTTAGACGTGGCATACCCAAAACCTCATTGTGGACAGGTAGATGATCGT
CCGTCGTTCGTCAAATTAC

Run BLAST on NCBI

transcript from alignment at sc0000052:277662..283711-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00005330 ID=TCONS_00005330|Name=TCONS_00005330|organism=Clytia hemisphaerica|type=transcript|length=6050bp|location=Sequence derived from alignment at sc0000052:277662..283711- (Clytia hemisphaerica)
TAGATATATCATAAAGCAATATGTCAGGAGGTCTGGAACAGAAGACACTA
ACAGCCGCTGATTGGTCAATTATTGGGATTTACTTTGCAATATGTTTGGG
TCTTGGTGTTTATGTGAGTACATGTTTCTCAAAACCCAGCTGGCACTCAC
AACGTTTTTTCAACGTTTATCTAATGTTCACAACGTCCAATTGACGTTAG
ATTAACGTTAAAACAACGTTGTGTGCCAAGGTAAGCCCCTGGAAAAAAGG
GCACTCGATCTGAAATCTACCGTATGTACAAAAATAGGGTACTCAAAATA
AGACCCTTACAGTGCATGTACATAGAAAGATTAGCCAAATTTGAGTAAAT
TTGGGCAAGAAATCAACCTTTACGGTGCGCATTTTTTTGAAAGGGTCAGG
TTTTCTCCCTTAGAATGCACTTTTTCTTATTTCAACACTTACAGTGCCTT
TTGGAAACCCTGAAAACCGTTTTCGGCAGCACCTTGAGTGCGATCCTCTC
CTCGGAATGCGAGCTTTAAACGCACCATTTTGCAGAATTTAGGAAGGATT
CAAATAAGTTTTTTTAACTCCCTTCAATTAAACTGTATTCCATAACTTGA
AGTTTTCTTAACTAAAACAAATTTGCACTCCCCATACGCGTTCGAGTTAT
GGAAACTCCATTGCAGGTCCGACGGAACAATTGTTAAAATGGGTAGGCTG
AAGGCTCAAAATGAGATAAAATTTGTAAGATTTGCTAGGAATTCGAGAAA
AAAATTTTTTTGCTCAAAAGTGGGGAGACTCCCCACTCTCCCCGCTTCCG
TTGGGCCTGCATTGTAGTTCTGAATCTTACACATTTTTGTATTTCAGTCC
AAGTTTGGGAAGAACAAAAACAACACAGCAGAAGAATATTTCTTGGCTGG
TCGCTCCATGATGTGGTGGGCTGTTAGTCATTTTTTTAATAGTTCTTTTC
TTTCAATATTTTGTGTCTATGTATCGTATTATCTGAACTAATGTCTCCAT
CATTAAATGTGTATTCGTTAGCCTATACGTAACTGTGGTGCGATGGTAGA
GCATCGGTTCAAAGTGCACAAGGTTATGGGTTCATTAACTGGTTCATACC
AAAGAGTTCGTACTTAGTGCTATTAAGAGAGGGATCAAGGGTGAATGGAG
GACCACAGGAAATAGTAGCACCCTCCTCTACCTTAAGACAGGTAGCTATC
GAAAAGAAGAGCCTTCGGGTTGACCATGTCTGTGGTCAAAAGCTAAAATA
CTTACTGTGATAAACCATTCAACACTCAATATCCTTTACCTGTTTAGGTT
GGTGGTAGCTTGTACGCCAGTAATATGGGATCTGAGCATTTCATTGGATT
GGCAGGATCAGGTGCAGCCAGTGGAATCGGAGTGGTCGCTTATGAATGGC
ATGCCAGTTGGATTCTCCTCTTACTTGGCTTCTTTTTCGTTCCCATTTAC
ATCAGATCAAAGATTTACACCATGCCCGAATACTTACGTAATCGTTTCCA
GAGTAAATGGATGCGTATTTATTTGACGGTCGTTTCACTCATCAGTTATA
TCACCACAAAAATATCGGTACGTATAACTTATTATATTCATAGTCTTGTG
GTTTGGTAAGCACCCAACGTTTGCCACTTAGTTTTATTGTTTAAATTCCG
ACAAACATTTGTGATTTGGTCATTTTTGGCTACTTCCGCATAACACATTA
CAAGATAGATTTATAGTGGAATCATTGTTTTAAGCTGGTGAAACTTGAAA
ACTATTTAACCACAGCTGGCACCTCTGACTCAATATCGCTGCAGTGTTCC
GAATATAAACTTTCCTGAAGATTATAGACCAATTATGATACCATTATGGA
TCGTTAATGTGATCTATTGTGATCAAAACTTCACGAAACAGATGTTAAAG
ATTTTCAGTGGAAAACGCAACATCTACAATATCTCCAAAACAACGTAATC
CTTTGACATAACGAATTTCCAGAGTTTTATTTTAAGAGAAGGTTAGGAGA
ATTCAAATATTTTTTAGAGTTGGCAAAGGGTTTCAGCTACATTCAATCCA
TTTCTTTTATAGGTGGATTTATTCGCTGGAGCGCTTTTCTTACGTGAAGC
TATTGGATTGAATATTTACATTTCTTCTGCTGCTTTACTGGTTTTCACCG
CTCTTTATACATTGCTTGGTAAGAACAACTTTTTGCTTGGCATTGTGGGA
TATAATGACGAATCCAACCACAGGCTGTGTAGCTCAGCCGGTAGAGCGTT
CGCCTTGCAATGGGTTCGATTCTCAGTCACCATATACCAACGAAGGATTA
TGGGTAATCTGACCTGGGCAGAAAGTAACTGGCCTGTAACTGGTCACTGA
GAGGATGTGTGGCACTCCACTTCAGCATTCGATCTTTCCCAGGAAAAGGG
ATAGCCTCCTTCACTTCCGGCTCTCCCGTACAGATGGATATGCTTACTTA
CTTCAACAACCTAATCCATGCGTTATGACGAGCTTGATAATAACATTATT
GTAGATTTTTAATTGAAGTTTTATCTGTATCAAGCACTTTCTATGTCAAT
TTGTTCACCAAACAAATGATATGACATCATTATAGCCCACGTTCTTAAGT
ATTTTTACTAAGATGCTTCGATCGCAAGCATTTTATATAAATTATGAACG
GTTTTTGGGAATATTCGTTTGTTAGCCATATTTAAAACAAGACTAACAAA
GATTTTTGCATTTAAGGGTGTATGTATGGTGTATGGTAATATTTATCAGG
GTAAATCAAAAGCGTCAATGTTTTGCCTCTTTGGGTCTTTTTTATTGCCC
TCAAGATAGAGGCTTTAAAATATTTATTTCTTTATTTTATTGTACAATTT
CGACCATATTGTTTTCAGGTGGTCTGTCGGCCGTCATTTATACTGACGTC
ATGCAATGCACATTGATGGTGATCGGAGCACTATCACTTTCGATATTGGG
TTTCAAAGAAGTTGGTGGTTTAGAAGGATTGTGGGAGAAATACCCAAAAG
CCATTGGTTCACCATTGAATACAACGATGTTAATGAATGCTACTGATAAT
GCAACTTTAGGATGTTATGGAAGTGTTGAGACGTATTGGGGTAACATGTT
CAGGTGAGAAGAATATTAGCATAAAGAAGTGAGGATCGCCTACAACCATA
ACTGCAGGGAGGGAGAGAGGTACAAATATTTCATCCTCTCAGCTTTCAGT
TTTCAGAAGAAAAAAACAACCCTGTGTCACAGACCCGGCGGACCCCAAAC
GCCCACTGGAAAAATTGATCAAAAAATCGTTCCCGTTGGAAAAAACCCTA
AGAATAAAACCACACTGGGAAATTACCTTAGAATTTTATACTCATTTGAT
CATCTCCATTGGCATTTCCTGAGATGGGAACATTTTTATCCCCACTGAGG
AAAAAGTTCGCAGGATCCAGGAGACAGGATTCTGGTAGTGAATTTAGTTT
TTAAGTTTATATGTGTAAAAGTTTATTTTCAATTTATTGAAACTTACAGA
CCATACGATGATGGTGAATTTCCATGGCCAGGAATTATCTTCTCGCTTCC
AATCACTGGAATATGGTACTGGTGTACTGATCAGGTAACACACAACGTTG
TTTGAACGTTCATCTAACGTTTTATGAATGTTAGGGACGTTAGATGGACG
TCGTTATAACGTTCTGTGCCAACTGGGATAACATGATTCGATCAAGATAG
TTCTTAATAATCAATGCTGATCATAGACGATCCTATCGTCTGACATAAAG
TCACTAAAAAATGATGACTTAGGAGGTGGGATAAATTTGAAAACGGAGAT
AAGCCCGGGGTGGCATAAAAAGTTACGGAGGTGTTTAAAGTGTTTCAAAC
TCAAAAACTGCTATTGCTTTCGTCTATACCCGCCTATTACGGCTGTAACC
TCGTCGCATATACATTTTCACGCTTTCTCTATCCCTCGAACAGAAGATAA
GATCTGCTAGACAACGGTTCTTGCCTAAAAAGACTTCCTAAATAAGTGAT
TACGTTTAATAACGGTGTTATCTTTTCATGTCATCATATAACTTCAAATT
AATAGATTTTATCGGAGTTTTTGATTTTTCTAAAAAAGCGATGAAATGTG
GGATTGTTTCGGGGGGATTACAATAGAAATCTCTTAGAAATTCCTCAAGG
GAATTCTATCGTAATACCCCGAAACAATCCCGCAATGAATGGCTTTTTTA
GAAAAATCAAAAACTCCGATAAGATCTATTGCTTCAACACCAGGTGATTG
TACAAAGAACCTTAGGAGCCAAGAACATGGTACAAGCTCGTTTGGGAACA
ATCGTTGCTGGATTCCTCAAACTTCTTCCTCTCTTCATCATGGTAATGCC
GGGAATGATTAGCCGTGTTTTATATGCAGATCGAGTGGCTTGTGGAAGTC
CAGAAGCATGTTTTGATTTCTGTGAAAACAAATATGGATGCTCCAATCAA
GCTTACCCACTGTAAGTGTTTTTATTGTACATTTCTTATAAGCCCAGATG
GCACAAAACGTCAAAACAACGTCCATGTGACGTTCCTAACGTTCAAATAA
CGTTATTTGAACGTTAAAACAACGTTGTGTGACAGCTGGGAGAGTATCAA
AAAATTTTAAAGCCTTCGGATGTTCTTAATATTTTGAGTTTTAAGCCTCA
ATATGTTCTTAACATGTTCTTATTGTCACCAATTGTCTCAAGTATAAATA
ACTGCAAAGTATTAAAATGCTCTTAATATTTTGGTCATTGAAGTCTAATG
TTCTTATCAAAAAACGCACAGTCATGAAAATGAAGACTCTGTAATATTTG
ATGGAAAATATGTGGTGGATTCATTGGATATTAGATTTTCTTTAAGTCTC
TTAAGGGTTTCTACAATGGAGGACACAGTCTTTTAGCAAACTTTTTTCTT
GTTTTAAGTGGATAACTTGAGCCTAGACCCCGTTGTGTGCCAGCGAGGAA
TCAGCGATTTGCTTGAAGTTTAACTGTTTCTTTTTTGATTTTGGTATGGG
AATTTCCGTTCTCAATTGAAAAAAAAACTGCTTTTGTGATTTGTTGTAGG
TTGGTATTGAACATTTTACCATCAGGTTTGGTTGGGTTAATGCTTGCGGT
AATGGTGGCAGCATTGATGTCATCCCTCTCCTCAGCCTTCAACAGCTCTT
CTACCATCTTTACAATGGATATTTGGCGAGTGTTGCGACCGAAAGCCAAC
GATAAAGAGATGTTGATGGTCGGTCGTGTTGTGGTCGTTGTCATGGTCGG
CATCGGTATTGCATGGATGCCCAATGTTTCACGTAAGAAGTTGAACTCTC
TAACTCTACACGCTTTTTTTATATAAGAATATACTTTATAAGAGCACTTA
TGATGAAATTGGCCAAAAAATTAAGATTATGGTAAGAATCCACCACCATC
ATGGAATCTTGAAATTAAACCTAAGCATGTAACAAAAATGCCAAATTTGT
ATTCTATTGTATGTATTTTTGGCTGGGATTGGATCCAAACCTAAAAATAC
CGTAAGTATATTTTAAGATGACTTTCCCCAAAGTTGAAGAACCATTCTTA
TAAAAAGCTGTTGAATTTCCAAATCAATTGAATGTTCACAAAAATTCATT
TTCTTCAACGTCTTCATCGAAGGAAAATTTGCACAGATTTGTGCATTTTT
TCCCTTTAAATTGAACAGAAAATAGCATGTAATAGATGCAGGAATCCTAT
ATAATAGGCTAATTTTCAGAAACTTTTGTTCTTTTTTTCTGTTTACAGAG
GGTCATTCAGGGCAGTTGTTCACTTACTTGCAAACTATTCAATCGTATCT
TGCACCACCGACATGCGCCGTCTTCTTGGTCGGCATGTTGTGGACCGGCC
TGACGGAGGTCGGTGCATTGAGCAGTATGTTGTTCGGGTTGGTGTTCGGT
ATTGTGCGTATCTCTTTAGACGTGGCATACCCAAAACCTCATTGTGGACA
GGTAGATGATCGTCCATCGTTCGTCAAATTACACTTCATGTATTATGGTA
AGTTGCATGAAGGNGACAGGTAGATGATCGTCCGTCGTTCGTCAAATTAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_003033	XLOC_003033	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000052	supercontig	sc0000052:277662..283711 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.0202317	2.36112	1.89504	4.74899	2.71656	2.9325	4.84507	17.1856	16.8508	4.52141	7.52994	8.14364	12.9659	14.1294	15.1203	9.39539	7.88506	0.43654	1.62952	7.04819	5.9404	0.188787	0.170304	3.08443	0.983339

Blast

[Close]

BLAST of TCONS_00005330 vs. Swiss-Prot (Human)
Match: SC5AB (Sodium/myo-inositol cotransporter 2 OS=Homo sapiens GN=SLC5A11 PE=1 SV=1)

HSP 1 Score: 413.305 bits (1061), Expect = 4.743e-136
Identity = 259/509 (50.88%), Postives = 353/509 (69.35%), Query Frame = 3

Query:   39 QKTLTAADWSIIGIYFAICLGLGVYSKFGKNKNNTAEEYFLAGRSMMWWAVGGSLYASNMGSEHFXXXXXXXXXXXXXXXXYEWHASWILLLLGFFFVPIYIRSKIYTMPEYLRNRFQSKWMRIYLTVVSLISYITTKISVDLFAGALFLREAIGLNIYISSAALLVFTALYTLLGGLSAVIYTDVMQCTLMVIGALSLSILGFKEVGGLEGLWEKYPKAIGSPLNTTMLMNATDNATLGCYGSVETYWGNMFRPYDDGEFPWPGIIFSLPITGIWYWCTDQVIVQRTLGAKNMVQARLGTIVAGFLKLLPLFIMVMPGMISRVLYADRVACGSPEACFDFCENKYGCSNQAYPLLVLNILPXXXXXXXXXXXXXXXXXXXXXXFNSSSTIFTMDIWRVLRPKANDKEMLXXXXXXXXXXXXXXXAWMPNVSQGHSGQLFTYLQTIQSYLAPPTCAVFLVGMLWTGLTEVGALSSMLFGLVFGIVRISLDVAYPKPHCGQVDDRPSFVK 1565
            QK L   D +++ +YF   L +G++S   K K +T + YFLAG  M+WW VG SL+ASN+GS HFIGLAGSGAA+GI V AYE +  + +L+L + F+PIYI  ++ TMPEYLR RF    + I L V+ L  YI TKISVD++AGA+F+++++ L++Y++   LL  TA+YT+ GGL+AVIYTD +Q  +M+IGAL+L    F  VGG+EGL EKY  A+ S        N ++N++ G       +   +FR     + PWPG++F + I  +WYWCTDQVIVQRTL AKN+  A+ G ++A +LK+LPLFIMV PGM+SR+L+ D+VAC  PE C   C N  GCS+ AYP LVL +LP+GL GLM+AVMVAALMSSL+S FNS+STIFTMD+W  LRP+A++KE+++VGRV V+++V + I W+P V     GQLF Y+Q+I SYL PP   VF++G  W    E GA   ++ GL+ G+VR+ LD  Y +P C Q D+RP  VK
Sbjct:   21 QKGLEPGDIAVLVLYFLFVLAVGLWSTV-KTKRDTVKGYFLAGGDMVWWPVGASLFASNVGSGHFIGLAGSGAATGISVSAYELNGLFSVLMLAWIFLPIYIAGQVTTMPEYLRKRFGGIRIPIILAVLYLFIYIFTKISVDMYAGAIFIQQSLHLDLYLAIVGLLAITAVYTVAGGLAAVIYTDALQTLIMLIGALTLMGYSFAAVGGMEGLKEKYFLALAS--------NRSENSSCGLPREDAFH---IFRDPLTSDLPWPGVLFGMSIPSLWYWCTDQVIVQRTLAAKNLSHAKGGALMAAYLKVLPLFIMVFPGMVSRILFPDQVACADPEICQKICSNPSGCSDIAYPKLVLELLPTGLRGLMMAVMVAALMSSLTSIFNSASTIFTMDLWNHLRPRASEKELMIVGRVFVLLLVLVSILWIPVVQASQGGQLFIYIQSISSYLQPPVAVVFIMGCFWKRTNEKGAFWGLISGLLLGLVRLVLDFIYVQPRCDQPDERPVLVK 517

The following BLAST results are available for this feature:

BLAST of TCONS_00005330 vs. Swiss-Prot (Human)

BLAST of TCONS_00005330 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SC5AB	4.743e-136	50.88	Sodium/myo-inositol cotransporter 2 OS=Homo sapien...	[more]

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TCONS_00005330 (transcript) - C. hemisphaerica