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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005329 ID=TCONS_00005329|Name=TCONS_00005329|organism=Clytia hemisphaerica|type=transcript|length=2638bpRun BLAST on NCBI protein sequence of TCONS_00005329-protein >TCONS_00005329-protein ID=TCONS_00005329-protein|Name=TCONS_00005329-protein|organism=Clytia hemisphaerica|type=polypeptide|length=635bp MSGGLEQKTLTAADWSIIGIYFAICLGLGVYSKFGKNKNNTAEEYFLAGRRun BLAST on NCBI transcript from alignment at sc0000052:274343..284555- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005329 ID=TCONS_00005329|Name=TCONS_00005329|organism=Clytia hemisphaerica|type=transcript|length=10213bp|location=Sequence derived from alignment at sc0000052:274343..284555- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000052:274343..284555- >TCONS_00005329 ID=TCONS_00005329|Name=TCONS_00005329|organism=Clytia hemisphaerica|type=CDS|length=20988bp|location=Sequence derived from alignment at sc0000052:274343..284555- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00005329 vs. Swiss-Prot (Human)
Match: SC5AB (Sodium/myo-inositol cotransporter 2 OS=Homo sapiens GN=SLC5A11 PE=1 SV=1) HSP 1 Score: 443.351 bits (1139), Expect = 4.750e-143 Identity = 278/591 (47.04%), Postives = 394/591 (66.67%), Query Frame = 2
Query: 140 QKTLTAADWSIIGIYFAICLGLGVYSKFGKNKNNTAEEYFLAGRSMMWWAVGGSLYASNMGSEHFXXXXXXXXXXXXXXXXYEWHASWILLLLGFFFVPIYIRSKIYTMPEYLRNRFQSKWMRIYLTVVSLISYITTKISVDLFAGALFLREAIGLNIYISSAALLVFTALYTLLGGLSAVIYTDVMQCTLMVIGALSLSILGFKEVGGLEGLWEKYPKAIGSPLNTTMLMNATDNATLGCYGSVETYWGNMFRPYDDGEFPWPGIIFSLPITGIWYWCTDQVIVQRTLGAKNMVQARLGTIVAGFLKLLPLFIMVMPGMISRVLYADRVACGSPEACFDFCENKYGCSNQAYPLLVLNILPXXXXXXXXXXXXXXXXXXXXXXFNSSSTIFTMDIWRVLRPKANDKEMLXXXXXXXXXXXXXXXAWMPNVSQGHSGQLFTYLQTIQSYLAPPTCAVFLVGMLWTGLTEVGALSSMLFGLVFGIVRISLDVAYPKPHCGQVDDRPSFVK-LHFMYYALIMFAACIIIMCVLSLFTRPVPLDLLGALTWKTINKPRFKEGMKSAEHTVSADLKLDDVRISTSNSQVGLNADQ 1909
QK L D +++ +YF L +G++S K K +T + YFLAG M+WW VG SL+ASN+GS HFIGLAGSGAA+GI V AYE + + +L+L + F+PIYI ++ TMPEYLR RF + I L V+ L YI TKISVD++AGA+F+++++ L++Y++ LL TA+YT+ GGL+AVIYTD +Q +M+IGAL+L F VGG+EGL EKY A+ S N ++N++ G + +FR + PWPG++F + I +WYWCTDQVIVQRTL AKN+ A+ G ++A +LK+LPLFIMV PGM+SR+L+ D+VAC PE C C N GCS+ AYP LVL +LP+GL GLM+AVMVAALMSSL+S FNS+STIFTMD+W LRP+A++KE+++VGRV V+++V + I W+P V GQLF Y+Q+I SYL PP VF++G W E GA ++ GL+ G+VR+ LD Y +P C Q D+RP VK +H++Y+++I+ +I + +S FT P +++ LTW T + P ++ +S L + + ++S+S V Q
Sbjct: 21 QKGLEPGDIAVLVLYFLFVLAVGLWSTV-KTKRDTVKGYFLAGGDMVWWPVGASLFASNVGSGHFIGLAGSGAATGISVSAYELNGLFSVLMLAWIFLPIYIAGQVTTMPEYLRKRFGGIRIPIILAVLYLFIYIFTKISVDMYAGAIFIQQSLHLDLYLAIVGLLAITAVYTVAGGLAAVIYTDALQTLIMLIGALTLMGYSFAAVGGMEGLKEKYFLALAS--------NRSENSSCGLPREDAFH---IFRDPLTSDLPWPGVLFGMSIPSLWYWCTDQVIVQRTLAAKNLSHAKGGALMAAYLKVLPLFIMVFPGMVSRILFPDQVACADPEICQKICSNPSGCSDIAYPKLVLELLPTGLRGLMMAVMVAALMSSLTSIFNSASTIFTMDLWNHLRPRASEKELMIVGRVFVLLLVLVSILWIPVVQASQGGQLFIYIQSISSYLQPPVAVVFIMGCFWKRTNEKGAFWGLISGLLLGLVRLVLDFIYVQPRCDQPDERPVLVKSIHYLYFSMILSTVTLITVSTVSWFTEPPSKEMVSHLTWFTRHDPVVQKEQAPPAAPLSLTLSQNGMPEASSSSSVQFEMVQ 599 The following BLAST results are available for this feature:
BLAST of TCONS_00005329 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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