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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005328 ID=TCONS_00005328|Name=TCONS_00005328|organism=Clytia hemisphaerica|type=transcript|length=1109bp
caagaacatttcaagaacatttttaggcttaaaagtcaAATGGTAAAggg
ttggatgttcttataaaagaaacggaCGTGTTTTGAAAGATGGTCAGTTG
GCAGGATCACAAAAAGTCAATCATTCATACCTTCCGTTTCTGGTTAAGAT
CATTTCAGTCCCAGTATTAAAGAAATCGTCCCATAACTTTTTGTTGATCA
ATTCAATTTCAACATTCCCTAAATGTTTATCGTAAATCTCTTTCGAATTG
TCTGGATATTTTGGTATGATTGCCAACGCACCAGGTCGAATATGTTTGGG
TGAGCGAGGCGCTgctgtgacgtcactttttcgcTTTCGCCGTTCGCTAC
CTTTTCGATCTTCGCTCttagaattttttgtttttttggatttagTATCA
ATTTTCTCACTGGTAGCTGAAGGGTGTGTTCCACCTTCTAAGTCTTTGAC
AGaaccaaattttaaaataaatggCATTTGCTGAGGGCTTTCAGCTGACG
TTGGCGGTGGTTGTATAAACCTTGGATAGGCCCCTGCCATGGGCGGATAG
ATCATATTTGGATTACTACCCGCCAATGGGCGTATTTGAATGAAACGTAC
TGGATGTTTATGACCGGGCGTCTGAATGGGTGGACCACGTACTAAGTACG
GATTGGTATTAGAGCCGTATGTTTGATTAACGAGTCCATaatattctttt
tcaaaatctccACATGTTTCCATCCGAACTTTCTCTAGAGCGTCATTATT
TTGATCCATCCATGAGGAGACTTTCGcgtttgattgttttgattcttgAT
CTCCAGAAGTATTGTCTAATATATCCGTATttgaaatctttgtttcctGT
TTCAAAGGTGATTTTTCAACCTCATTTTCATGTTCGTCCTTTACACTGCC
TGTGCTTTTCACTTCCATTTTTTCGATTTGCTCAtcgattttctttgata
tttCGACATCATTGGGTTGTATTGAAGATACATTTTCGATGACCTCATCA
TTTCCATTTTCACTTGGACGAGATTCGAAAAGACTTTCGTTTTCTTCTGT
CGTTGTTGCGTCACTGTGACTAATTTCATGGAGtgaatctttttcatttt
ctattgAAT Run BLAST on NCBI transcript from alignment at sc0000052:268701..270057- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005328 ID=TCONS_00005328|Name=TCONS_00005328|organism=Clytia hemisphaerica|type=transcript|length=1357bp|location=Sequence derived from alignment at sc0000052:268701..270057- (Clytia hemisphaerica)
CAAGAACATTTCAAGAACATTTTTAGGCTTAAAAGTCAAATGGTAAAGGG
TTGGATGTTCTTATAAAAGAAACGGACGTGTTTTGAAAGATGGTCAGTTG
GCAGGATCACAAAAAGTCAATCATTCATACCTTCCGTTTCTGGTTAAGAT
CATTTCAGTCCCAGTATTAAAGAAATCGTCCCATAACTTTTTGTTGATCA
ATTCAATTTCAACATTCCCTAAATGTTTATCGTAAATCTCTTTCGAATTG
TCTGGATATTTTGGTATGATTGCCAACGCACCAGGTCGAATATGTTTGGG
TGAGCGAGGCGCTGCTGTGACGTCACTTTTTCGCTTTCGCCGTTCGCTAC
CTTTTCGATCTTCGCTCTTAGAATTTTTTGTTTTTTTGGATTTAGTATCA
ATTTTCTCACTGGTAGCTGAAGGGTGTGTTCCACCTTCTAAGTCTTTGAC
AGAACCAAATTTTAAAATAAATGGCATTTGCTGAGGGCTTTCAGCTGACG
TTGGCGGTGGTTGTATAAACCTTGGATAGGCCCCTGCCATGGGCGGATAG
ATCATATTTGGATTACTACCCGCCAATGGGCGTATTTGAATGAAACGTAC
TGGATGTTTATGACCGGGCGTCTGAATGGGTGGACCACGTACTAAGTACG
GATTGGTATTAGAGCCGTATGTTTGATTAACGAGTCCATAATATTCTTTT
TCAAAATCTCCACATGTTTCCATCCGAACTTTCTCTAGAGCGTCATTATT
TTGATCCATCCATGAGGAGACTTTCGCGTTTGATTGTTTTGATTCTTGAT
CTCCAGAAGTATTGTCTAATATATCCGTATTTGAAATCTTTGTTTCCTGT
TTCAAAGGTGATTTTTCAACCTCATTTTCATGTTCGTCCTTTACACTGCC
TGTGCTTTTCACTTCCATTTTTTCGATTTGCTCATCGATTTTCTTTGATA
TTTCGACATCNCTCCACATGTTTCCATCCGAACTTTCTCTAATGCGTCAT
TGTTTTGATCCATCCATGAGGAGACTTTCGCGTTCGATTGTTTCGATTCT
CCGGGGGTATTGTCTATTATGTCTGTATTGGAAATCTTTGTTTCCTGTTT
CAAAGGTGATTTTTCAACCTCATTTTCATGTTCGTCCTTTACACTGTTTG
TGCTTTTCACTTCCATTTTTTCGATTTGCTCATCGATTTTCTTTGATATT
TCGACATCATTGGGTTGTATTGAAGATACATTTTCGATGACCTCATCATT
TCCATTTTCACTTGGACGAGATTCGAAAAGACTTTCGTTTTCTTCTGTCG
TTGTTGCGTCACTGTGACTAATTTCATGGAGTGAATCTTTTTCATTTTCT
ATTGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005328-exon-sc0000052-1575043694:269101..270057 | TCONS_00005328-exon-sc0000052-1575043694:269101..270057 | Clytia hemisphaerica | exon |
| TCONS_00005328-exon-sc0000052-1575043694:268701..268852 | TCONS_00005328-exon-sc0000052-1575043694:268701..268852 | Clytia hemisphaerica | exon |
| TCONS_00005328-exon-sc0000052-1510915933:269101..270057 | TCONS_00005328-exon-sc0000052-1510915933:269101..270057 | Clytia hemisphaerica | exon |
| TCONS_00005328-exon-sc0000052-1510915933:268701..268852 | TCONS_00005328-exon-sc0000052-1510915933:268701..268852 | Clytia hemisphaerica | exon |
| TCONS_00005328-exon-sc0000052-1491911889:269101..270057 | TCONS_00005328-exon-sc0000052-1491911889:269101..270057 | Clytia hemisphaerica | exon |
| TCONS_00005328-exon-sc0000052-1491911889:268701..268852 | TCONS_00005328-exon-sc0000052-1491911889:268701..268852 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000052 | supercontig | sc0000052:268701..270057 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001699 | TF_T-box |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005634 | nucleus |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003700 | transcription factor activity, sequence-specific DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| cellular_component |
GO:0005634 |
nucleus |
| molecular_function |
GO:0003700 |
transcription factor activity, sequence-specific DNA binding |
Blast
The following BLAST results are available for this feature:
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