TCONS_00005327 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005327
Unique NameTCONS_00005327
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2487

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005327 ID=TCONS_00005327|Name=TCONS_00005327|organism=Clytia hemisphaerica|type=transcript|length=2487bp
AAGTTATATCACAACTCAAACCATTACCTCCCTAATCCTTCGCCACGAAA
GCTTGTGTTTTTctacaatttttattttgtaagaaaaatcatcacaaaaa
caacaacacatCAGATCAGGCGACTGTAAAATCAAGCAGTCAAGGGGTTG
CGAGTTAAAGTTTCAGAGTACCTATTCCTCTTTTCTTGCAGTGAGGATAT
AGTTATTTTGCAAGAAAATGTCTTCACCATCACCTGGTAAAAGACGTATG
GATACTGACGTTGTCAAATTGATTGAAAGCAATCATGACGTAACAATCCT
TGGAGGTCTTAATGAATTTGTTGTGAAGTTTTTTGGTCCTAAAGACACTC
CTTACGAAGGTGGAATTTGGAAGATTCGTGTTGATCTACCAGATAAATAT
CCCTTCAAGTCTCCATCGATTGggtttttgaataaaattttccatccaaa
tATTGACGAGGCGTCAGGTTCTGTTTGCTTGGATGTTATCAATCAAGCCT
GGACTGCTCTTTAtgATTTGAACAATGTTTTTGAATCATTTCTCCCGCAA
CTCTTGTCATATCCAAATCCAGTGGACCCACTGAATGGCGATGCGGCCGC
TCTTTATTTACACAAACCTGAagattataaaaccaaaatcaaAGATTACG
TAAAGAAGTATGCATCACCAGAGGTACTTGGTGAGAAAGACGAGGACAAC
ATGTCGACATCGTCTGAAAGTTCTCTCTCTGATTTCTCTGACGATGGAGA
CGCAGCTGGAATGGAATTATGATGAAAGAAACTCTTTTGTTGTTTGAAAT
GTGTGCATGGGAAAAGTAGACAATTAGTGAGATTTCAATCACTTTTTGTC
ACTCATGcttaaaagcaaaataaaacttttctggATTGTCAAAAGGCTCA
ATTCGAGATATTCTTAATGTGATGCATCATGGAAGCACCCAAAATAACCG
GGTGTGTAccaataattttgaattttaatcaatACAACTAGTGACAAACG
TCCGGGCTGTTTTTTATTGCTTTCGTATGAAACATGACATCATGAATATC
GTGACTTTATAAGCCCCCAAAAAACCGTTAACACGCATCCCGGTCAGGTT
AACTGAATCATCTTTGCGATTATCCAATCGAGTGAATTTTTTCGGATTTT
AGCTCTGTACCCAATAAGAATTTGATGACATCGATGTCAAAAAAAGgagt
ttccaaaaaaatcaatccgagaatataaaagaatataactacagttgact
ttctctaattcgattttcaaggggaattggattttcatcgaataagggac
cGTATCTAATAGTAGAGCTTCGTTTTATGATAGTTTCTTGTTGATGTTGG
CTTGCAAATTATCAAATAATGGAGcatatcgaataatagaacgtcaaatt
agagagcgtcaactttgggttttctttgatttttattCGTCGTTGAGTTC
AACATCCATGTACAGACTTTAGGTATTGTTTTAATATGAAATCTTATAAT
ATAGATATGGATAGCAATTTTAGTTCTCATAGTTTACTATTTTTAtggag
attttttttcaagtttttatatCTTTTAGTGGAGGAAAAGGGTGCTGCGt
tttatccttttttttttttgaagcaaagCTTAGATTTTGAAGTGgatatt
taagaaaaatttgtaaAGGACTGCCTCGGGCCTTTAAGCTTGTATACTTt
ataatgataataaaaaaaagcttcttatttttgatttgaaagccGCGCTG
CCCTCTTTGGAAGATGTTCAAGAAAAAAGCTCCCTTTACTCCCTTGTAAA
TACAATAATTTTTGGTGTATATaagttagatttttttctctgacGCTGAA
ACATTCAGAATTTTTTCAGCtgtaaagaaaatatattttgtacAGTTGTG
TAGCATATTATCTTAATAATCATTATTATTATACTTAATgtattgacaat
ttttttgccgatgattttttttgctgggTTTAATTTTGTGGAGTacctta
ttttttcaaaatgtttcgtTTGTACACGTGACAGAAGGTGCTAGGCTGAG
TTTGTCCCTATTATAGTAAATAAGGAGGTTACAAGGTAGAATTCCCTCAA
CTATAAGgtgactttttattttagcaaaaacaagataaaacttcatccga
aaattgattttgccatGGATCTATATGGAGTCAgatcaaaaacaacaaag
tctccgtttttttaaaaactaatAGTTCGCTTCACAACAAAAGCATCGTC
ATATATGATAGTAATACTGTAAATGTTGAATAAATTTCTAGNATATTTCG
CTTCACAACATATGCATCATCATCGTTAATACTGAACAAATTTctcgaaa
aatcaaaaatcaactaGCGGGACAAATTCAAGTCTCATTATTTTTACATT
CCACAAAAagttttctagaatttttcgTCGTAGAATATTATGAATTTAGT
GATTATTTATCATATTTTGATGAATTATATGTTTTTG
Run BLAST on NCBI

protein sequence of TCONS_00005327-protein

>TCONS_00005327-protein ID=TCONS_00005327-protein|Name=TCONS_00005327-protein|organism=Clytia hemisphaerica|type=polypeptide|length=184bp
MSSPSPGKRRMDTDVVKLIESNHDVTILGGLNEFVVKFFGPKDTPYEGGI
WKIRVDLPDKYPFKSPSIGFLNKIFHPNIDEASGSVCLDVINQAWTALYD
LNNVFESFLPQLLSYPNPVDPLNGDAAALYLHKPEDYKTKIKDYVKKYAS
PEVLGEKDEDNMSTSSESSLSDFSDDGDAAGMEL
Run BLAST on NCBI

transcript from alignment at sc0000052:206565..213046-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005327 ID=TCONS_00005327|Name=TCONS_00005327|organism=Clytia hemisphaerica|type=transcript|length=6482bp|location=Sequence derived from alignment at sc0000052:206565..213046- (Clytia hemisphaerica)
AAGTTATATCACAACTCAAACCATTACCTCCCTAATCCTTCGCCACGAAA
GCTTGTGTTTTTCTACAATTTTTATTTTGTAAGAAAAATCATCACAAAAA
CAACAACACATCAGATCAGGCGACTGTAAAATCAAGCAGTCAAGGGGTTG
CGAGTTAAAGTTTCAGAGTACCTATTCCTCTTTTCTTGCAGTGAGGATAT
AGTTATTTTGCAAGAAAATGTCTTCACCATCACCTGGTAAAAGACGTATG
GATACTGACGTTGTCAAATTGTATGTTTTTTACATAATTCACATCTATAT
TTTACTAGTTTTTTTCTATGATGGAAAAAGTTACTTGAATTTGTGCCGAG
TTTTGCATTTCTTTTAAATTTATCAATTTGCTGATGTTTTCAATGTTGTA
ATTATAATATCTTTACAGGATTGAAAGCAATCATGACGTAACAATCCTTG
GAGGTCTTAATGAATTTGTTGTGAAGTTTTTTGGTCCTAAAGACAGTAAA
TATCTTCTTTTATTTTGAAATTCTTTTGTTACATGAGCGAGGGGTATAAA
ATGGGCCATTCCAGAAATTTTTTATTACCCCGCGTCGGACGACGTGCAAT
TTTTAATTTTTTCTAGCCTTGGAAATTTTTTTTTCAGTGGTGGTCGGAAA
TTCTGATGAAAATCCATCTACTTTCTCAAAATGCGTCGGAAATTCCACTC
AATTTTGCCTTCTATAATTCAATTGTCGTGGAAATTCATAATTTTTCTTC
TCTCGCCTTGGAAATTTTGAATTTTGGTGAAAACTTTTGTCCTCAGAAAT
CCTGTGTCGTCCGCCCCCTGTTACAGACAAATTCTGGAATGGCCTGGTAA
TAAAATCATGACCCACTGAATGGCCTGAGCTTTTGCACGCCAATTGGAGA
TTTTGAACTTGAAAAAGTCTGGACAGATGACCCGAACTGGCCTGGGCCAT
CATACCGTGGGCGGGCCATGGTAAATCTCAATTAGTTTTGAAGATACAGT
GTCTCAAGGATAATATAATAGGCTAGTTAAGCAAAAACTGACCCCCCCTA
AAAGTTGTCAATTCAAGACGGTGTTAATCGAACAAATCAAACTCTGAATC
AATTGAATAAATCGAACGTACCTTAAGGGGATTAATTTTCGCGGGGATTA
AATTTCGCAAATTTTGCATGTTTTTCCAAAATTTGCGAAAATTAATCCTC
GCAAAAATTTTAAAAACATTTGGATTCGCGAAATTTGTAAAATGTAATCC
TCGCGAAAAATTTAAAATCATGATTTTTGCCTGAACCCCTAGGAAAATGA
AAGAAATTCGGTCAAAAAGGGGCTGATTCGTGAAATATTATCCCGTGAAA
ATTAAATTATTTTGCAAAAAAATTGTCTCGCAATACGTTCCCGCGAAAAT
TAATCCCCTTAAGGTAATTGAATAATTGTGATTCGTTTGTCAGTTAGTGG
AAATACTTCCATTTAAAGCATGTTCAAATTCACAATAACCAGTCCACTTT
CTTTTTTTTACGGAAACCAAACAAGTGCGAACAAGTCATTAAAACTAAAA
GTCAGCGCTCCATGGCTGTGTTGTAGGTTTTGTAATCAATTTTCACAGTT
TTTTGATTCTACGTCATTTTATAAACCTCTTAGTAGGAAAGTGTGTCATT
CATTAAGGAATTTTATAACACTTCATGGCAGATTAAAAAGACAATTAGAA
AACGAAAGTTTCTGCGTTTTTCATTTTCACAATTATGCGGAATAATCAAA
TTTTCAGAAGATGCTTTACCGTCAATTGCTCTAACTTGGGACTATCTGAA
AAAACATGGGACAGCCATTTGGTCGTAAGTCAAGTGAAAATACACCCCAG
AAATCAGATTTGACCAATCGTCCCAAGTTAGAGCAGTTGACAGTATTCGA
TATGACGATTCTTGTTTCTGTAAAATCGCAATTCCCCATGGTTGCGAAAT
GGTAGCTATAGGTAATTTATTTGTTCTTTTGCTATTTTCTTTTGTTCGGT
GTGAAGTAAAGACGCTTCGTAAATCGAAGTACTTCCACTAGCTGTTTGTT
GGGCGCAATCGACTGGTAATCGAATATTACCCAGGANTTTGTTCTGTGTG
AAGTAAATCGAAGTACTTCCACTAACTATTTGTTGGGCGCAATCGAATGG
TAATCGAATATTACCCAGGATAACTCCTTCATTTGCTGCCATTACGTTCA
ATTGTACTCTATTATGCTCGATTTGACTTTTTATGTTTTAAATAAATCAC
TTGTGAAAATTTGAGTAGTGGTACGACAAAAATTCCTGTAAATTATTTAA
GTCCTCAAGACTTAACTCACATCTTGACTTAAATCAATATTGTATAACTC
TCAAGCAAAAATATATTGATAGTAAAATATATTTCTTTCTTTGTTATCCC
CAAATTGTCAATAGTCTTCCTAAGCTTTAACATGTCTTTTCTCAATAGCT
CCTTACGAAGGTGGAATTTGGAAGATTCGTGTTGATCTACCAGATAAATA
TCCCTTCAAGTCTCCATCGATTGGTGAGTTGTCGTGTATAAATGTGTATG
ACTGATTTTCATGTTGGAAAATGGTTGTTGTTGTTTGTTTTGAAGAGTTT
CCGAATAACTAATTTCATGAAGCCAAATTGGAATCGTCTAAGATGTAATC
ACCCATTAACACCATGCTATTGATTTTATTTATTTTCTTTCAGGGTTTTT
GAATAAAATTTTCCATCCAAATATTGACGAGGCGTGAGTCATTTTTTAAT
TTGTATGTTTCTTCAAATTGAAGAAAATGATAAATCCAAAGATAAGATAA
TTTTGTGATTGTGTTTGTATCTGTTATTTTCTATAGTTATTTTTCAGTTT
GTTAAAATTTAAAAACGTATGTATTGTCACATACAAATTGAAATCTTGAT
AATCTTTTTGATTTCCTTTCTGAAGATTTTTATAGAGATTTGCATCCAAA
ATATTTATTTATTTTCACCTTTATAGGTCAGGTTCTGTTTGCTTGGATGT
TATCAATCAAGCCTGGACTGCTCTTTATGGTAAAATTTTATATTTTCAGG
GTCTATTTTAAACTGGTCTTAGTAATGGGTTCTAGGAAATTTACTCAAGA
ACAAAATCACACCCAATCTGATTATTATTATTAAAATGAATAATGAATAT
TCAGAGTGGCATCTTGAGCATGAAAAGGGTCATCAAACAACGAAACTCTA
AGGTCGGACTAAAAATGATAAAGATAATTGCGAGAAATTATATCCAGGTT
TGATTATAGGTTGAAGTTAAAAAGGCATTTTTCATTTTTCATGTAAAATA
AAGCCTTTTTCCTAAGGAAAATTATTTCTAGGTGGTCTTTTTCTGGGCAC
AGGCTCACTAAGGTGTCCTTCTGGGAATACCAAATTTCTCAGACAGAATT
TTTCTGTCAATATTTTTTGAAATTTTTTATATATGGGACAGTAAAAAAAG
GATTCCTTTGACATGGATCTGGTCAGAATCCTGCAGAATCATGTATTTTC
TGTCCTCTAGTACTTTTTATCACTTTATAGTGCATTTTTTGAGTAGAGGG
ATCTCAATTAGTAGAGAGATAATTTAAGAAGCAAGATCAAATGATTAAGT
GCCGTATATCCACCCAATATTCCAGGGCCGGCGAAACCGGGGGGCTAGGG
GGGCTGTAGCCCCCCCACTTTTTTGCAAAAAAAAAAAAAAAGGGGGAGAA
AAAAAGGGGGGGGGAAAGGGGGGGGGGGGGGGGGGTGTCCCCCCCCCCCT
TTTTTGAAAAAAAAAAAAAAAAGAGTGAGAGAGAAAGAGAGGGTGAGAAA
AAAGACTTGGCTACGTTCAACAATGAAGCCAAAACGGTTTAACAATCTTT
CTTTGCTCCATATTAATATAAAAATCTAACGGATAAACTTGATTTAGATG
AAGTTGGTAGAGAGTTTGTGTCGACTCGAGAGCATTGCTTTAATTACTTT
CGACAATTTTAATTAACGTGTACTAGTATATTCTTTGGTGATTATCAGTA
TAAAAAACGCCTAACTTTTTTGATTTTTTCATTCCAATAACTTCACAAAA
ATTAAATTTAGACCACTTCTAGGCCAATATAGAGTACCATAATTTCAAAA
ATTTTCCGGCCCGTCGGCCCCAACCATGGTGGGGCCTCCTTAGTCTCTAT
ATCATTTAGACCCCTCACTTTTAAAACCGATTCGCCGGCGCTGTATTCAG
TGGTAATAACTAATCTATTTCATTCTTTCAGATTTGAACAATGTTTTTGA
ATCATTTCTCCCGCAACTCTTGTCATATCCAAATCCAGTGGACCCACTGA
ATGGCGATGCGGCCGCTCTTTATTTACACAAACCTGAAGATTATAAAACC
AAAATCAAAGGTATGAAGGCTTTATAATGTAGTAAAATTGATCGTACTTA
AGGCTAGAGTCGAAGTAAGTCACTTTGTGCAGTAAAGTTTGGACTTGCAA
CAAGAAATGTAAAGTTATAAATTCAAACAGTTCTTATTAATGCTCGAGCA
TCTTCTGTTTCATTATGAACTTTTTCAGTTCTAGGCTAATGGCGTGTATA
TGACTACCTATGATTTTGCAGAGATCTGTGTTTCAGAGTTGTAAACTTTC
TTGATTTTCAATCTTTATGATTTTATGGTTTCTTTTCAGATTACGTAAAG
AAGTATGCATCACCAGAGGTACTTGGTGAGAAAGACGAGGACAACATGTC
GACATCGTCTGAAAGTTCTCTCTCTGATTTCTCTGACGATGGAGACGCAG
CTGGAATGGAATTATGATGAAAGAAACTCTTTTGTTGTTTGAAATGTGTG
CATGGGAAAAGTAGACAATTAGTGAGATTTCAATCACTTTTTGTCACTCA
TGCTTAAAAGCAAAATAAAACTTTTCTGGATTGTCAAAAGGCTCAATTCG
AGATATTCTTAATGTGATGCATCATGGAAGCACCCAAAATAACCGGGTGT
GTACCAATAATTTTGAATTTTAATCAATACAACTAGTGACAAACGTCCGG
GCTGTTTTTTATTGCTTTCGTATGAAACATGACATCATGAATATCGTGAC
TTTATAAGCCCCCAAAAAACCGTTAACACGCATCCCGGTCAGGTTAACTG
AATCATCTTTGCGATTATCCAATCGAGTGAATTTTTTCGGATTTTAGCTC
TGTACCCAATAAGAATTTGATGACATCGATGTCAAAAAAAGGAGTTTCCA
AAAAAATCAATCCGAGAATATAAAAGAATATAACTACAGTTGACTTTCTC
TAATTCGATTTTCAAGGGGAATTGGATTTTCATCGAATAAGGGACCGTAT
CTAATAGTAGAGCTTCGTTTTATGATAGTTTCTTGTTGATGTTGGCTTGC
AAATTATCAAATAATGGAGCATATCGAATAATAGAACGTCAAATTAGAGA
GCGTCAACTTTGGGTTTTCTTTGATTTTTATTCGTCGTTGAGTTCAACAT
CCATGTACAGACTTTAGGTATTGTTTTAATATGAAATCTTATAATATAGA
TATGGATAGCAATTTTAGTTCTCATAGTTTACTATTTTTATGGAGATTTT
TTTTCAAGTTTTTATATCTTTTAGTGGAGGAAAAGGGTGCTGCGTTTTAT
CCTTTTTTTTTTTTGAAGCAAAGCTTAGATTTTGAAGTGGATATTTAAGA
AAAATTTGTAAAGGACTGCCTCGGGCCTTTAAGCTTGTATACTTTATAAT
GATAATAAAAAAAAGCTTCTTATTTTTGATTTGAAAGCCGCGCTGCCCTC
TTTGGAAGATGTTCAAGAAAAAAGCTCCCTTTACTCCCTTGTAAATACAA
TAATTTTTGGTGTATATAAGTTAGATTTTTTTCTCTGACGCTGAAACATT
CAGAATTTTTTCAGCTGTAAAGAAAATATATTTTGTACAGTTGTGTAGCA
TATTATCTTAATAATCATTATTATTATACTTAATGTATTGACAATTTTTT
TGCCGATGATTTTTTTTGCTGGGTTTAATTTTGTGGAGTACCTTATTTTT
TCAAAATGTTTCGTTTGTACACGTGACAGAAGGTGCTAGGCTGAGTTTGT
CCCTATTATAGTAAATAAGGAGGTTACAAGGTAGAATTCCCTCAACTATA
AGGTGACTTTTTATTTTAGCAAAAACAAGATAAAACTTCATCCGAAAATT
GATTTTGCCATGGATCTATATGGAGTCAGATCAAAAACAACAAAGTCTCC
GTTTTTTTAAAAACTAATAGTTCGCTTCACAACAAAAGCATCGTCATATA
TGATAGTAATACTGTAAATGTTGAATAAATTTCTAGNATATTTCGCTTCA
CAACATATGCATCATCATCGTTAATACTGAACAAATTTCTCGAAAAATCA
AAAATCAACTAGCGGGACAAATTCAAGTCTCATTATTTTTACATTCCACA
AAAAGTTTTCTAGAATTTTTCGTCGTAGAATATTATGAATTTAGTGATTA
TTTATCATATTTTGATGAATTATATGTTTTTG

Coding sequence (CDS) from alignment at sc0000052:206565..213046-

>TCONS_00005327 ID=TCONS_00005327|Name=TCONS_00005327|organism=Clytia hemisphaerica|type=CDS|length=3885bp|location=Sequence derived from alignment at sc0000052:206565..213046- (Clytia hemisphaerica)
ATTACGTAAAGAAGTATGCATCACCAGAGGTACTTGGTGAGAAAGACGAG
GACAACATGTCGACATCGTCTGAAAGTTCTCTCTCTGATTTCTCTGACGA
TGGAGACGCAGCTGGAATGGAATTATGAATTTGAACAATGTTTTTGAATC
ATTTCTCCCGCAACTCTTGTCATATCCAAATCCAGTGGACCCACTGAATG
GCGATGCGGCCGCTCTTTATTTACACAAACCTGAAGATTATAAAACCAAA
ATCAAAGGTCAGGTTCTGTTTGCTTGGATGTTATCAATCAAGCCTGGACT
GCTCTTTATGGGTTTTTGAATAAAATTTTCCATCCAAATATTGACGAGGC
CTCCTTACGAAGGTGGAATTTGGAAGATTCGTGTTGATCTACCAGATAAA
TATCCCTTCAAGTCTCCATCGATTGGATTGAAAGCAATCATGACGTAACA
ATCCTTGGAGGTCTTAATGAATTTGTTGTGAAGTTTTTTGGTCCTAAAGA
CAATGTCTTCACCATCACCTGGTAAAAGACGTATGGATACTGACGTTGTC
AAATTATTACGTAAAGAAGTATGCATCACCAGAGGTACTTGGTGAGAAAG
ACGAGGACAACATGTCGACATCGTCTGAAAGTTCTCTCTCTGATTTCTCT
GACGATGGAGACGCAGCTGGAATGGAATTATGAATTTGAACAATGTTTTT
GAATCATTTCTCCCGCAACTCTTGTCATATCCAAATCCAGTGGACCCACT
GAATGGCGATGCGGCCGCTCTTTATTTACACAAACCTGAAGATTATAAAA
CCAAAATCAAAGGTCAGGTTCTGTTTGCTTGGATGTTATCAATCAAGCCT
GGACTGCTCTTTATGGGTTTTTGAATAAAATTTTCCATCCAAATATTGAC
GAGGCCTCCTTACGAAGGTGGAATTTGGAAGATTCGTGTTGATCTACCAG
ATAAATATCCCTTCAAGTCTCCATCGATTGGATTGAAAGCAATCATGACG
TAACAATCCTTGGAGGTCTTAATGAATTTGTTGTGAAGTTTTTTGGTCCT
AAAGACAATGTCTTCACCATCACCTGGTAAAAGACGTATGGATACTGACG
TTGTCAAATTATTACGTAAAGAAGTATGCATCACCAGAGGTACTTGGTGA
GAAAGACGAGGACAACATGTCGACATCGTCTGAAAGTTCTCTCTCTGATT
TCTCTGACGATGGAGACGCAGCTGGAATGGAATTATGAATTTGAACAATG
TTTTTGAATCATTTCTCCCGCAACTCTTGTCATATCCAAATCCAGTGGAC
CCACTGAATGGCGATGCGGCCGCTCTTTATTTACACAAACCTGAAGATTA
TAAAACCAAAATCAAAGGTCAGGTTCTGTTTGCTTGGATGTTATCAATCA
AGCCTGGACTGCTCTTTATGGGTTTTTGAATAAAATTTTCCATCCAAATA
TTGACGAGGCCTCCTTACGAAGGTGGAATTTGGAAGATTCGTGTTGATCT
ACCAGATAAATATCCCTTCAAGTCTCCATCGATTGGATTGAAAGCAATCA
TGACGTAACAATCCTTGGAGGTCTTAATGAATTTGTTGTGAAGTTTTTTG
GTCCTAAAGACAATGTCTTCACCATCACCTGGTAAAAGACGTATGGATAC
TGACGTTGTCAAATTATTACGTAAAGAAGTATGCATCACCAGAGGTACTT
GGTGAGAAAGACGAGGACAACATGTCGACATCGTCTGAAAGTTCTCTCTC
TGATTTCTCTGACGATGGAGACGCAGCTGGAATGGAATTATGAATTTGAA
CAATGTTTTTGAATCATTTCTCCCGCAACTCTTGTCATATCCAAATCCAG
TGGACCCACTGAATGGCGATGCGGCCGCTCTTTATTTACACAAACCTGAA
GATTATAAAACCAAAATCAAAGGTCAGGTTCTGTTTGCTTGGATGTTATC
AATCAAGCCTGGACTGCTCTTTATGGGTTTTTGAATAAAATTTTCCATCC
AAATATTGACGAGGCCTCCTTACGAAGGTGGAATTTGGAAGATTCGTGTT
GATCTACCAGATAAATATCCCTTCAAGTCTCCATCGATTGGATTGAAAGC
AATCATGACGTAACAATCCTTGGAGGTCTTAATGAATTTGTTGTGAAGTT
TTTTGGTCCTAAAGACAATGTCTTCACCATCACCTGGTAAAAGACGTATG
GATACTGACGTTGTCAAATTATTACGTAAAGAAGTATGCATCACCAGAGG
TACTTGGTGAGAAAGACGAGGACAACATGTCGACATCGTCTGAAAGTTCT
CTCTCTGATTTCTCTGACGATGGAGACGCAGCTGGAATGGAATTATGAAT
TTGAACAATGTTTTTGAATCATTTCTCCCGCAACTCTTGTCATATCCAAA
TCCAGTGGACCCACTGAATGGCGATGCGGCCGCTCTTTATTTACACAAAC
CTGAAGATTATAAAACCAAAATCAAAGGTCAGGTTCTGTTTGCTTGGATG
TTATCAATCAAGCCTGGACTGCTCTTTATGGGTTTTTGAATAAAATTTTC
CATCCAAATATTGACGAGGCCTCCTTACGAAGGTGGAATTTGGAAGATTC
GTGTTGATCTACCAGATAAATATCCCTTCAAGTCTCCATCGATTGGATTG
AAAGCAATCATGACGTAACAATCCTTGGAGGTCTTAATGAATTTGTTGTG
AAGTTTTTTGGTCCTAAAGACAATGTCTTCACCATCACCTGGTAAAAGAC
GTATGGATACTGACGTTGTCAAATTATTACGTAAAGAAGTATGCATCACC
AGAGGTACTTGGTGAGAAAGACGAGGACAACATGTCGACATCGTCTGAAA
GTTCTCTCTCTGATTTCTCTGACGATGGAGACGCAGCTGGAATGGAATTA
TGAATTTGAACAATGTTTTTGAATCATTTCTCCCGCAACTCTTGTCATAT
CCAAATCCAGTGGACCCACTGAATGGCGATGCGGCCGCTCTTTATTTACA
CAAACCTGAAGATTATAAAACCAAAATCAAAGGTCAGGTTCTGTTTGCTT
GGATGTTATCAATCAAGCCTGGACTGCTCTTTATGGGTTTTTGAATAAAA
TTTTCCATCCAAATATTGACGAGGCCTCCTTACGAAGGTGGAATTTGGAA
GATTCGTGTTGATCTACCAGATAAATATCCCTTCAAGTCTCCATCGATTG
GATTGAAAGCAATCATGACGTAACAATCCTTGGAGGTCTTAATGAATTTG
TTGTGAAGTTTTTTGGTCCTAAAGACAATGTCTTCACCATCACCTGGTAA
AAGACGTATGGATACTGACGTTGTCAAATTATTACGTAAAGAAGTATGCA
TCACCAGAGGTACTTGGTGAGAAAGACGAGGACAACATGTCGACATCGTC
TGAAAGTTCTCTCTCTGATTTCTCTGACGATGGAGACGCAGCTGGAATGG
AATTATGAATTTGAACAATGTTTTTGAATCATTTCTCCCGCAACTCTTGT
CATATCCAAATCCAGTGGACCCACTGAATGGCGATGCGGCCGCTCTTTAT
TTACACAAACCTGAAGATTATAAAACCAAAATCAAAGGTCAGGTTCTGTT
TGCTTGGATGTTATCAATCAAGCCTGGACTGCTCTTTATGGGTTTTTGAA
TAAAATTTTCCATCCAAATATTGACGAGGCCTCCTTACGAAGGTGGAATT
TGGAAGATTCGTGTTGATCTACCAGATAAATATCCCTTCAAGTCTCCATC
GATTGGATTGAAAGCAATCATGACGTAACAATCCTTGGAGGTCTTAATGA
ATTTGTTGTGAAGTTTTTTGGTCCTAAAGACAATGTCTTCACCATCACCT
GGTAAAAGACGTATGGATACTGACGTTGTCAAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003031XLOC_003031Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005327-proteinTCONS_00005327-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005327-exon-sc0000052-1575043694:212777..213046TCONS_00005327-exon-sc0000052-1575043694:212777..213046Clytia hemisphaericaexon
TCONS_00005327-exon-sc0000052-1575043694:212552..212628TCONS_00005327-exon-sc0000052-1575043694:212552..212628Clytia hemisphaericaexon
TCONS_00005327-exon-sc0000052-1575043694:210524..210598TCONS_00005327-exon-sc0000052-1575043694:210524..210598Clytia hemisphaericaexon
TCONS_00005327-exon-sc0000052-1575043694:210314..210353TCONS_00005327-exon-sc0000052-1575043694:210314..210353Clytia hemisphaericaexon
TCONS_00005327-exon-sc0000052-1575043694:210018..210070TCONS_00005327-exon-sc0000052-1575043694:210018..210070Clytia hemisphaericaexon
TCONS_00005327-exon-sc0000052-1575043694:208687..208815TCONS_00005327-exon-sc0000052-1575043694:208687..208815Clytia hemisphaericaexon
TCONS_00005327-exon-sc0000052-1575043694:206565..208407TCONS_00005327-exon-sc0000052-1575043694:206565..208407Clytia hemisphaericaexon
TCONS_00005327-exon-sc0000052-1510915933:212777..213046TCONS_00005327-exon-sc0000052-1510915933:212777..213046Clytia hemisphaericaexon
TCONS_00005327-exon-sc0000052-1510915933:212552..212628TCONS_00005327-exon-sc0000052-1510915933:212552..212628Clytia hemisphaericaexon
TCONS_00005327-exon-sc0000052-1510915933:210524..210598TCONS_00005327-exon-sc0000052-1510915933:210524..210598Clytia hemisphaericaexon
TCONS_00005327-exon-sc0000052-1510915933:210314..210353TCONS_00005327-exon-sc0000052-1510915933:210314..210353Clytia hemisphaericaexon
TCONS_00005327-exon-sc0000052-1510915933:210018..210070TCONS_00005327-exon-sc0000052-1510915933:210018..210070Clytia hemisphaericaexon
TCONS_00005327-exon-sc0000052-1510915933:208687..208815TCONS_00005327-exon-sc0000052-1510915933:208687..208815Clytia hemisphaericaexon
TCONS_00005327-exon-sc0000052-1510915933:206565..208407TCONS_00005327-exon-sc0000052-1510915933:206565..208407Clytia hemisphaericaexon
TCONS_00005327-exon-sc0000052-1491911889:212777..213046TCONS_00005327-exon-sc0000052-1491911889:212777..213046Clytia hemisphaericaexon
TCONS_00005327-exon-sc0000052-1491911889:212552..212628TCONS_00005327-exon-sc0000052-1491911889:212552..212628Clytia hemisphaericaexon
TCONS_00005327-exon-sc0000052-1491911889:210524..210598TCONS_00005327-exon-sc0000052-1491911889:210524..210598Clytia hemisphaericaexon
TCONS_00005327-exon-sc0000052-1491911889:210314..210353TCONS_00005327-exon-sc0000052-1491911889:210314..210353Clytia hemisphaericaexon
TCONS_00005327-exon-sc0000052-1491911889:210018..210070TCONS_00005327-exon-sc0000052-1491911889:210018..210070Clytia hemisphaericaexon
TCONS_00005327-exon-sc0000052-1491911889:208687..208815TCONS_00005327-exon-sc0000052-1491911889:208687..208815Clytia hemisphaericaexon
TCONS_00005327-exon-sc0000052-1491911889:206565..208407TCONS_00005327-exon-sc0000052-1491911889:206565..208407Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000052supercontigsc0000052:206565..213046 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.63669	5.30082	2.46325	2.18466	28.9205	23.831	38.6789	41.5371	25.8674	24.1012	26.303	18.4698	26.3223	18.2326	11.806	15.0526	27.0886	33.445	16.1086	20.9623	39.9031	41.0496	15.4666	19.8418	21.4242	25.0438	41.842	30.0038	16.737	18.2594
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR016135UBQ-conjugating_enzyme/RWD
IPR000608UBQ-conjugat_E2
IPR023313UBQ-conjugating_AS
Blast
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BLAST of TCONS_00005327 vs. Swiss-Prot (Human)
Match: UBE2H (Ubiquitin-conjugating enzyme E2 H OS=Homo sapiens GN=UBE2H PE=1 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 2.337e-92
Identity = 131/157 (83.44%), Postives = 149/157 (94.90%), Query Frame = 2 
Query:  218 MSSPSPGKRRMDTDVVKLIESNHDVTILGGLNEFVVKFFGPKDTPYEGGIWKIRVDLPDKYPFKSPSIGFLNKIFHPNIDEASGSVCLDVINQAWTALYDLNNVFESFLPQLLSYPNPVDPLNGDAAALYLHKPEDYKTKIKDYVKKYASPEVLGEK 688
            MSSPSPGKRRMDTDVVKLIES H+VTILGGLNEFVVKF+GP+ TPYEGG+WK+RVDLPDKYPFKSPSIGF+NKIFHPNIDEASG+VCLDVINQ WTALYDL N+FESFLPQLL+YPNP+DPLNGDAAA+YLH+PE+YK KIK+Y++KYA+ E L E+
Sbjct:    1 MSSPSPGKRRMDTDVVKLIESKHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYATEEALKEQ 157
The following BLAST results are available for this feature:
BLAST of TCONS_00005327 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UBE2H2.337e-9283.44Ubiquitin-conjugating enzyme E2 H OS=Homo sapiens ... [more]
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