TCONS_00005323 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005323
Unique NameTCONS_00005323
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length644

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005323 ID=TCONS_00005323|Name=TCONS_00005323|organism=Clytia hemisphaerica|type=transcript|length=644bp
GAGATGGAAAGGTAGacctttttgattttctttatgtgGCAAACCATCAC
CATCAGCTGAAATGAGATCTCTGGTACTCTTAGCTGTCTTGGTGACAGTA
TCCCTTGCTTGCGAGGATAAAATCACCACCTGCTACAAACTttcgaaaga
attttgtcaataCAAATCATGGAGAGAATCTTGTGAACGTTATTGCAACG
TGTGTACCCCACCTACTCAACCTCCAAGAGAACGTTCAGATTGCCGTGAT
ATTAGCAGTTTGTGTTCAAACTACAACCGTTACGAATATTGTAAAAACGG
TTATTACCAACGAGTGTGCAAGAAACGTTGTGGATTGTGTTCGAAAACTG
AGAAGACAACACCAGAGTTGGCAACAACACCAAAGTTGGCATCAACACCA
GGTTTATCAACAACAAACATACCAGCAAAACAGACCTCAGAAAGTCCATC
TGGATCATGCAAAGACACACACAAGGATTGTCGGTACATGAAGAATCTCT
GCAACAATTACGAATTCGTTAGAGGATTGTGTCCCAAACTTTGCAACATG
TGTTAAATATAACAGATTATTAAAGGATATATTTTGGGCACCAAAACTAT
ACTGTATATAGTTCATCTACTAAAGTCAAACGGTTACTTTAAGT
Run BLAST on NCBI

protein sequence of TCONS_00005323-protein

>TCONS_00005323-protein ID=TCONS_00005323-protein|Name=TCONS_00005323-protein|organism=Clytia hemisphaerica|type=polypeptide|length=164bp
MRSLVLLAVLVTVSLACEDKITTCYKLSKEFCQYKSWRESCERYCNVCTP
PTQPPRERSDCRDISSLCSNYNRYEYCKNGYYQRVCKKRCGLCSKTEKTT
PELATTPKLASTPGLSTTNIPAKQTSESPSGSCKDTHKDCRYMKNLCNNY
EFVRGLCPKLCNMC
Run BLAST on NCBI

transcript from alignment at sc0000052:122993..126840-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005323 ID=TCONS_00005323|Name=TCONS_00005323|organism=Clytia hemisphaerica|type=transcript|length=3848bp|location=Sequence derived from alignment at sc0000052:122993..126840- (Clytia hemisphaerica)
GAGATGGAAAGGTAGACCTTTTTGATTTTCTTTATGTGGCAAACCATCAC
CATCAGCTGAAATGAGATCTCTGGTACTCTTAGCTGTCTTGGTGACAGTA
TCCCTTGGTAAGTTAGAACTTTCTTAAACCCCTGTCTCACAGCCCCAGTG
GAACTTTTTCCTCAGTGGGGATAAAAATTCCAATTGAAATCCCATTGAAT
TTCGATTAAGGATGAATTCAAAGTCAATTTCCCAGTGGGAATGAAATTTC
AGGGTATTTTTCCACTGGGGACGAAATTTTTGTCAAATTTTCCAGTGGGG
CTGGAGTCTCAGCGGGTCTGTGACACAGGGATGTTCTTTCTTTTAATAAA
AAGCATTACACTCTTTTTCTTTAATATGAACAATTTTATAAGAACAATTT
TATAAGAAAAATTTTATAAGAACAATTTTATAAGAACTGATCCTGATCCC
ACAATCCCAGACAAAAGGTTGTAGACTTTTCAAAAATACATTTACAAAAA
TTTCGAAATAAGCTCTGAAAACCCATTTTCACCAGGGCCAATGTTATTTT
TATTAGATTTGGAGAGTTGGGTGATAAGTCTAGAAGCCAAATCCACTCGA
CATTGAAGAAAATGAATTTTTGCAAAGTCTTCAGGCCTTTTTTTTTGTCT
GAGATTGAAGGTTGAAGGTTCAATGAGTTTTGCAACTTTTTCGAGAAGAC
AACTAATTAGACCATATTCGAGATGGTTTAATCAATTATAAACAACTTTT
CAGAGCTCTCTGGTGCTCCCAGCACCCACCACCTGTGGGGATGAAGTTCA
CCCATTTTCAGCCATTTTCAGTCATTTGAAGGTTTTGGAAGTCTAAAATT
CACAAGGACTAAAGCCATAAGGATTGCTAGCTAGCCTGTAGTGAGTGTCT
GCTGGCAAATAATCACTTATGGTTCATTTGGGGAATTTCCCAAATGCTAA
AAGGGCTTTTTTTTGGCACTTTTGACTAATTTTTAAAGTCTACATATCTT
TTGTCCATGATTTCAATTTAGGGGTCAAAATAGTAAAAATTGAGTAAAGG
CCTCAAATACCTCAATTAGACTCTGAAAATAAGAACAGGATAAGAACAGT
TTGAGGCTCAAAGCTTAAGAAACAGCACAAAAACACTCGCAAAATGGTGA
AAATACGAACATGTTAAGAACATAATTTTTAGGCTTGTAAGTCAAAATGT
TAAGAACATCCAGAGGCTTCTTTATAAAAAACAACGTGTAGACTTAGGAC
AGACGATTCTTTCCAATCTCATAGCTGTGAGATGCTTCCAAGGTACCGGA
TATAATCATATCAATATATCATTATTATTTCAGCTTGCGAGGATAAAATC
ACCACCTGCTACAAACTTTCGAAAGAATTTTGTCAATACAAATCATGGAG
AGAATCTTGTGAACGTTATTGCAACGTGTGTACCCCACCTACTCAACCTC
CAAGAGAACGTTCAGGTAAGAACAAAAACTTGTGTCAGTGAAGTTAAGAT
ATTTTTGGCACCTGCTTTAAAGTTTATTCGCTTTGAGTGAGCACTTTATC
TTTTAGTCATATGAAAACCACTCAAGGAAATTGGTCTCATTACGACTTCC
ACATGGTAGTAAAAAAGAGTGTACTTAAAACGACTGGACTTTAGTAAAGC
TTTTATATGCGAATAAATTTGATCAAAATTATCAGAGTTGGTAAGGAAAA
CACATGGTATCAGCCCCCCCCCCCAGAAATCTGAAGGGCACTTAGGCCAG
GTTAGTAGAGGGGGCTAATGCCTTGCAATTCTTTGGGGTTACCTATCCAT
TAAGGGTACCTAGCTGTTTTGATGGAGGCTCTGGGGGCTGGTTATATTTT
CCAAATCTAATATTTCAAAATATTTCAAATTATTGAATTTTTTTACCCCA
GCACCTAGTTTCCCATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
AGCATGATTTTAGGAATGACAAAAGAACAAAAAGTGTCAATTCAAAGAAA
TTATCTGCTGAATAGGGGTACCTAACTCAAAGCAATTTTTCAAGGGGACC
GAAATTGCTGGGGGCACCACCATGCTCAATGGGGGCACCTGAAAAGTGGG
CTGAAACCATGAAAACAATTGTTTCAACATCAGTTCTAACCATGATCTTC
ACCTTTGAGATAAATTGAGTTAGTTTTCTTCCAGTATTGCAGAATTCTTT
CTTAATTTACTTTTTATTCGAGAAATCGAAGTGCATCAATTTTTTTCTTC
TAGTTTTTGTGCTTTACAATGTCTAAAACTGACAAAAACTAAAGGTGAGC
AATTTATTGAAGGAGTTCCCCTTTGATCTGTTATAGATTGCCGTGATATT
AGCAGTTTGTGTTCAAACTACAACCGTTACGAATATTGTAAAAACGGTTA
TTACCAACGAGTGTGCAAGAAACGTTGTGGATTGTGTTCGAAAACTGAGA
AGACAACACCAGAGTTGGCAACAACACCAAAGTTGGCATCAACACCAGGT
TTATCAACAACAAACATACCAGCAAAACAGACCTCAGAAAGTCCATCTGG
TAAACTACAGTTAATAATTCGACGTTCTACTATTCTACATATTCCATTAT
TCAATGATATTGAAAGTCACTGTCAACATGAAACTCTCATAAACGACGCT
CTACAATTTAATGATGCGTTCTCTTGCGCTCTTATTTGATGAAAATCCAA
TTCCCCTGGAATATCGAATTAGAAAACCTCTACATTTAAGGAATGCAACA
GTAAATTATGTTAAAAAGCGGATTAAATTTCGCGTGGATTGATTTTTGCG
ATTTTCGCGAATTTTGATCGTGATATTTATGATCATGATTTTTGCAAAAA
AACCTAAAATGAAAGAAGTTATTTGATAAAGAGGCTGATTCGCAAAATTA
TGTCCTCGCGAAAATTTCGAATCTTCTAATCGCCAAAATGCTTCTCGCGA
AAATTCATTAACTGGATGTGTTCAATTCTCTATCCCTGATAGATCCAATC
CTTTCGTGATCCCTGTCATATAACATGAAAAAAAAAACGAACCGAGGAGC
TGAACTCGATCCGACATATTCTATACCATATTCTACCATTTATCTTCGTT
CCATAGGATCATGCAAAGACACACACAAGGATTGTCGGTACATGAAGAAT
CTCTGCAACAATTACGAATTCGTTAGAGGATTGTGTCCCAAACTTTGCAA
CATGTGTTAAATATAACAGATTATTAAAGGATATATTTTGGGCACCAAAA
CTATACTGTATATAGTTCATCTACTAAAGTCAAACGGTTACTTTAAGT

Coding sequence (CDS) from alignment at sc0000052:122993..126840-

>TCONS_00005323 ID=TCONS_00005323|Name=TCONS_00005323|organism=Clytia hemisphaerica|type=CDS|length=1980bp|location=Sequence derived from alignment at sc0000052:122993..126840- (Clytia hemisphaerica)
GATCATGCAAAGACACACACAAGGATTGTCGGTACATGAAGAATCTCTGC
AACAATTACGAATTCGTTAGAGGATTGTGTCCCAAACTTTGCAACATGTG
TTAAATTGCCGTGATATTAGCAGTTTGTGTTCAAACTACAACCGTTACGA
ATATTGTAAAAACGGTTATTACCAACGAGTGTGCAAGAAACGTTGTGGAT
TGTGTTCGAAAACTGAGAAGACAACACCAGAGTTGGCAACAACACCAAAG
TTGGCATCAACACCAGGTTTATCAACAACAAACATACCAGCAAAACAGAC
CTCAGAAAGTCCATCTGCTTGCGAGGATAAAATCACCACCTGCTACAAAC
TTTCGAAAGAATTTTGTCAATACAAATCATGGAGAGAATCTTGTGAACGT
TATTGCAACGTGTGTACCCCACCTACTCAACCTCCAAGAGAACGTTCAGA
TGAGATCTCTGGTACTCTTAGCTGTCTTGGTGACAGTATCCCTTGGATCA
TGCAAAGACACACACAAGGATTGTCGGTACATGAAGAATCTCTGCAACAA
TTACGAATTCGTTAGAGGATTGTGTCCCAAACTTTGCAACATGTGTTAAA
TTGCCGTGATATTAGCAGTTTGTGTTCAAACTACAACCGTTACGAATATT
GTAAAAACGGTTATTACCAACGAGTGTGCAAGAAACGTTGTGGATTGTGT
TCGAAAACTGAGAAGACAACACCAGAGTTGGCAACAACACCAAAGTTGGC
ATCAACACCAGGTTTATCAACAACAAACATACCAGCAAAACAGACCTCAG
AAAGTCCATCTGCTTGCGAGGATAAAATCACCACCTGCTACAAACTTTCG
AAAGAATTTTGTCAATACAAATCATGGAGAGAATCTTGTGAACGTTATTG
CAACGTGTGTACCCCACCTACTCAACCTCCAAGAGAACGTTCAGATGAGA
TCTCTGGTACTCTTAGCTGTCTTGGTGACAGTATCCCTTGGATCATGCAA
AGACACACACAAGGATTGTCGGTACATGAAGAATCTCTGCAACAATTACG
AATTCGTTAGAGGATTGTGTCCCAAACTTTGCAACATGTGTTAAATTGCC
GTGATATTAGCAGTTTGTGTTCAAACTACAACCGTTACGAATATTGTAAA
AACGGTTATTACCAACGAGTGTGCAAGAAACGTTGTGGATTGTGTTCGAA
AACTGAGAAGACAACACCAGAGTTGGCAACAACACCAAAGTTGGCATCAA
CACCAGGTTTATCAACAACAAACATACCAGCAAAACAGACCTCAGAAAGT
CCATCTGCTTGCGAGGATAAAATCACCACCTGCTACAAACTTTCGAAAGA
ATTTTGTCAATACAAATCATGGAGAGAATCTTGTGAACGTTATTGCAACG
TGTGTACCCCACCTACTCAACCTCCAAGAGAACGTTCAGATGAGATCTCT
GGTACTCTTAGCTGTCTTGGTGACAGTATCCCTTGGATCATGCAAAGACA
CACACAAGGATTGTCGGTACATGAAGAATCTCTGCAACAATTACGAATTC
GTTAGAGGATTGTGTCCCAAACTTTGCAACATGTGTTAAATTGCCGTGAT
ATTAGCAGTTTGTGTTCAAACTACAACCGTTACGAATATTGTAAAAACGG
TTATTACCAACGAGTGTGCAAGAAACGTTGTGGATTGTGTTCGAAAACTG
AGAAGACAACACCAGAGTTGGCAACAACACCAAAGTTGGCATCAACACCA
GGTTTATCAACAACAAACATACCAGCAAAACAGACCTCAGAAAGTCCATC
TGCTTGCGAGGATAAAATCACCACCTGCTACAAACTTTCGAAAGAATTTT
GTCAATACAAATCATGGAGAGAATCTTGTGAACGTTATTGCAACGTGTGT
ACCCCACCTACTCAACCTCCAAGAGAACGTTCAGATGAGATCTCTGGTAC
TCTTAGCTGTCTTGGTGACAGTATCCCTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003029XLOC_003029Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005323-exon-sc0000052-1575043694:126734..126840TCONS_00005323-exon-sc0000052-1575043694:126734..126840Clytia hemisphaericaexon
TCONS_00005323-exon-sc0000052-1575043694:125376..125507TCONS_00005323-exon-sc0000052-1575043694:125376..125507Clytia hemisphaericaexon
TCONS_00005323-exon-sc0000052-1575043694:123742..123954TCONS_00005323-exon-sc0000052-1575043694:123742..123954Clytia hemisphaericaexon
TCONS_00005323-exon-sc0000052-1575043694:122993..123184TCONS_00005323-exon-sc0000052-1575043694:122993..123184Clytia hemisphaericaexon
TCONS_00005323-exon-sc0000052-1510915933:126734..126840TCONS_00005323-exon-sc0000052-1510915933:126734..126840Clytia hemisphaericaexon
TCONS_00005323-exon-sc0000052-1510915933:125376..125507TCONS_00005323-exon-sc0000052-1510915933:125376..125507Clytia hemisphaericaexon
TCONS_00005323-exon-sc0000052-1510915933:123742..123954TCONS_00005323-exon-sc0000052-1510915933:123742..123954Clytia hemisphaericaexon
TCONS_00005323-exon-sc0000052-1510915933:122993..123184TCONS_00005323-exon-sc0000052-1510915933:122993..123184Clytia hemisphaericaexon
TCONS_00005323-exon-sc0000052-1491911889:126734..126840TCONS_00005323-exon-sc0000052-1491911889:126734..126840Clytia hemisphaericaexon
TCONS_00005323-exon-sc0000052-1491911889:125376..125507TCONS_00005323-exon-sc0000052-1491911889:125376..125507Clytia hemisphaericaexon
TCONS_00005323-exon-sc0000052-1491911889:123742..123954TCONS_00005323-exon-sc0000052-1491911889:123742..123954Clytia hemisphaericaexon
TCONS_00005323-exon-sc0000052-1491911889:122993..123184TCONS_00005323-exon-sc0000052-1491911889:122993..123184Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005323-proteinTCONS_00005323-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000052supercontigsc0000052:122993..126840 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.081558	0	0	0.271033	0	0	0	0	0.0687274	0	0	0.108634	29.7787	33.573	17.7836	44.1329	1.53063	1.19233	113.574	108.868	5.75641	7.50022	2.61836	1.78535	2.18913	3.51675	0	0	0	0.0922287
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003582ShKT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005323 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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