TCONS_00005322 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005322
Unique NameTCONS_00005322
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length384

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005322 ID=TCONS_00005322|Name=TCONS_00005322|organism=Clytia hemisphaerica|type=transcript|length=384bp
ATTTTTTCATACAAACATCTCAACATGAAGAGCGTTGCGATTCTTATATC
CCTGTTTGTACTGGATGTAGCATTCGGGGCAGCGGCAGACACTGAAGATT
GTCGAAATGTGAAGTCATATTGTCACTTAATTCCCAAATCCATCATGTGC
CATTCACTTTTGAATTGGAAATGCAGGAAGTATTGTGGATTGTGTGTCAT
CAAAACCACTAAAAGACCAGAGACTACAAAAAGAATAACAACAAAACCAA
CAACGCCATCAACAACCACCACAGAACAGACTACAAAAAGAATGACAACA
CAACCAACAACGCCATCAACAACCACCACAGCACGTGAGTTAACCATCGA
TAAAAGATTCTAGGATTCTAGTTTGAATTATTAA
Run BLAST on NCBI

protein sequence of TCONS_00005322-protein

>TCONS_00005322-protein ID=TCONS_00005322-protein|Name=TCONS_00005322-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
IFSYKHLNMKSVAILISLFVLDVAFGAAADTEDCRNVKSYCHLIPKSIMC
HSLLNWKCRKYCGLCVIKTTKRPETTKRITTKPTTPSTTTTEQTTKRMTT
QPTTPSTTTTARELTIDKRF
Run BLAST on NCBI

transcript from alignment at sc0000052:108397..120033-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005322 ID=TCONS_00005322|Name=TCONS_00005322|organism=Clytia hemisphaerica|type=transcript|length=11637bp|location=Sequence derived from alignment at sc0000052:108397..120033- (Clytia hemisphaerica)
ATTTTTTCATACAAACATCTCAACATGAAGAGCGTTGCGATTCTTATATC
CCTGTTTGTACTGGATGTAGGTAAGTAAAAAACTCGTCGGGGGAGGGGTC
GGGCGTCACTCTAGGCTGCTGGCATCCACTAACGGATTCGTGCTCCTTAT
AGAGGATGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNAACTCGCCAAGATTTCCTTTGCGAACCGGAAAGCGGTTGGTAGATC
ATTAAGCAGACCTATACTACCTGTGGTTTTGTAGAGGTCTGCGATTCAGA
CTAGCGTCACTCAAGTTAGGCGATCTACACGTTTTTTTATAAGAACATCC
AAAATTTTTAAAGCCTTCAGATATTCTTAACTTTCTGAGTTTTAAGCCAA
AAAATGTTTTTAACATGTTCTTATTTTGACCATTTTGACACCCCTGTGTC
ACAGGCCCGGTGGACCCCCCACCCCGGTGGAAAAATAGACCAAAAAATCA
TCCCCGGTGGAAAAAATATCTTACAATTTTAACCCAGCTGCAAAATTGCT
CTATGATTTTATCCCCATTGAAAACTGATTGTAAAAAATTGCACTCCAAA
ACTTTCCCCACTGGAATTTTCGAGCTGGAAACAATAGATTTTCTATCCCC
ATTGGCATTTTGATAAAAATTTTCATCCCCACTGAGGGAAAAATTTCTAC
CGGGGCACTGAGACAGGGCTGTATTTTGTGAATATCTTTGACCATTTCAC
TAAGAAATTGCGTGTTTTCAAGTCCGCAAAGCCTTAATATGTTCTTAACT
TGTTCTTAATATTTTTGCCATCGAAGCCTCATGTTCATAAAAATAAGTAA
CATGCTGAATGGACCTACCTGATGATGAAAGTTAGATAGCAATAAGGAGA
AAAATGAAAACAATCAGTCAGACGATATAGTGTTTTGCGAAAATGCNNAG
AACATACTAAGGCTTTGGAGACTTAAAAACATGCATTTTCTTAAGAAATT
ACATCAAAATGCTCAAAAAACGCTGAAAATAAGAACATTTTAAGAGCATT
TTTAGGCTTCAAATCCATAAAACTAAGAACATCCGAAGGCTTCGAAAATT
TTTGACGTTCTTATAAAAAAAACAACGTGTAACGCATTAAATTTTCATTG
ATTGTTGATGGGGGAAGAGGGAAGGGGAGTAGGGAAAATAGAAATAGAAA
GTTCCGGTTGCAAACATCAGTTTTATTGACAATTGAATCATGCTTAATGG
TGGGCATTGTTATCAATAATGTTTTTGTGTGAAAAAAAAAACAAAGAAAT
AAAGGAAAAAGTCAAATCTGCAAAAACGGTGATTTCCAGTGTTACAGTAA
AATATTACTCCCCAAAATTTATACTCTCCAGTCATTATTTACTGGGAAAT
AATTACTCCCCAGTTATCTTTTCCCAGGAAATTATTACTTCCGGGAGTAT
AAATTTACGCGAAAATAATGACTCCCTTCGGGAAATTTTTACTCCCCTGA
TAGTATACCAAAAAAACTGGCATAGATCACGATCAACATTCGGTTTCCTA
ATCTTTTTTTTCCTGTTTATCATGAGATAAATAACAAAAACAATATGGAA
ACTTTTACTGTTATTTTGACATTTAAATTGAATTTAAACTTTTTTCTTGA
GTGCGATTTGCTTGGGTTAGAAAATTGGAGAGATATTTTAAAAACCTGGC
TATATCTTGACACTGCAACACTGTTTTCTTTATTTTGAAATAATTCTTGA
AATTGAATTCAAAAAATTCTTGTTCGTAGAGCTTTTTCTTGGCCCAATAA
AGATTATAATAAAAAGGCATCTTTCTTGACTATACTGATTTCGAACCCCC
CGTTTATTCAACCCCCCCGTCTATTATATTTTACAGAAATTTCAGACCCC
CTCCCCCTTTTATATTTGGACCCTCTATTATTCGGGTCCTTAGAGTAGAA
TATTTCAAAAGGAAAATGAAGATAAAAAATCGCTACAGTCGGGATAGCAT
TCTTTGATTTTTCCCCGAACGGATGAAAATATTCTTGTCGTCACCAGTGG
TACAGTTCAACGGGATGGGCGGGGTAACAACGGTTCACTTTAACTTGTAG
ATGATTTTATGGCTAGGTTTTCTTTTACAGCAACCACAAAAATAAAGTTT
ATGGATTACAGTATGCATACATTTTTAAGACGTCTCTACTTAGCAAATGA
CTTCATTGATTGGAATGTCCAAATCGAATGTTTAATTCGAATATGCAATA
GCCGGAATTCTCAGGGAGTCATAATTTACTGGGAAAATAACACTCCCCCC
TAATTAGAGCAAATAAATTTGCAATTTGAAGGGGAGTAATTTTTTCCACG
GGGGAGTAATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TTTTTCCACGGGGGAGTAATAATTTCTCAGGTAATTATTACTCCGGGGGT
CATTTTTTCCCGGGAAATTATAACTGAGGGAGTGATTTTTTCCGGGGAGT
AAAAATTTACGGTTACACCGGCATTTTCAACCGGAAAAAATGTTTCTCAA
AAATCGAACTCTGCCATGTTTTGAGCATTGCGAATACGCATCTTTCTGCA
AAAAATCTGAAAAGATTAAGGATGAAAATTCGAGAAAATGTAAAAAAAAC
CGGTTTTTCCGGCATATTTCTGGCATTTTGGGCCGGAAAAAAATGTTTTT
TGAAAATCGGGCTCTGTCACATTTTAGGTATTATCATTTTACATCAGTGT
GCAAAATTTCATCAAAAAATATAAAGTACAGCTTGAGAAATTCAAGAAAT
ACTATCTTTCCGGCGAAAATAGGTTGTTCCGGCGATTTTTGAATAGTTCC
GGCTTCAAAAATCATTTTTTTGAAAATTGAAACATGCTTGATGGTGGGCA
TTGCTATTAATAATGTTTTTGAATGAAAAAACAACCAATCATAAGAAAAA
AATCCAATGAAAATCCAGAAAAACGGCGATTCCCTGCATATTTCCGGCAT
TTTCGACCGGAAAAAATTTTTCTCAAAAATTGGACTCAGCCATGTTTTGG
GCATTGTTAATACGCACCTTTGAGCAAAAAAATCAGAAAAAATAATGAGT
CAACATTAAGAAACGCTATATTTTCTTATTTGGTTAAAGGGAATTCCCCC
AAATTCCCCCGTTTTTTAAGGCGAATAATAATTTCCGGGAAAAACCACTT
CAGCCATTCTTTAGAGAATCTTGCCCTCCATCTTTGTACAAAAAATCAGA
AAAAAGTAATGACAGGATTTTGCACAAAGTCCAAAAAACCCTATTTTTAG
GTAGTTTTTGGCCCAAATTTGCCTTATGCTGCTGGCATCCACTAACGGAT
TCATGCTCCTTATAGAGGATGCTTAATAAGCGATATTTCCTTTGTCCAGA
GATTTGCCGCCTTTAGCCGATATACGGTTAAAGACATTTTTAGCTGGCGA
GTGTCTACAAATATTACATTACGTAATGTTTAAGTTTTCTGTGAGGCACC
AAATNTGGCGAGTGTCTACAAATATAACATTACGTAATGTTTACATTTTC
TGTGAGGCACCGAATCATAGATTGGAAAATATATTTGGATTTCGAAAAAA
AAGTAGGCGGGAGGAAGTTTGCTTCTTTTTCTTCCTCCTTTCTTGTTTAA
TACACCTTTCCCGTAATTCAAATTTCTCAGAAATGGCCCTCCACCGTTGT
GTATGTTTTACGAATTACGGGAAAGGTGTATTCTTCTTGTTTAATGTGGA
GATTTTGTAAAAGATTAGAAATTAAATTTATTGAATTTAAGTGCCCTGAT
GTATTTTCTGTGTGCACCAACAAAATTTTGCTTCATAAAACTAAATTTTG
ATGCTTGAATTTGGACTTGTGTGAGTGTATATTTTTTTACCACACTGGAT
TCTTTGATCACTTTGGCTCCAGATAATTGTTTTGTCAGTTCTACAGATAT
GTTGCAGATTATTTCAATGTATTCTAGTTATGTATATACAGTACATTTTG
GGGGTTATATTGAATATTTCTGAAATTACTTCTTTATGATTCTACAAAAG
GGAGTGTTGTTGTTCCCTTGTTAAATGTTAAAACAAACAAAAAACTTTTC
TTCAGATTTGGCATTTCACTTTTCGATACTCTGTGGCCTTTGTGTTTATC
TTTTTCATGTACTTAGCTTCAATCCTTTTGAAGAGATTGGAGTGTTTTTG
GTTGTTTTCTTTCACTTTTTTGTTCATATTTGTATTTTTGAGCTTCGACG
GAAGAGCTGAATGAATTGTTTTGATAAATTTACAGACCAGATATCTTATA
AAAGCAAAAGTCAAAAATAAATCTACAGACTGTACAAAATGCGCGCATCA
GATTGTTTTTTATCTTTCTTTCTGTTTTGTTTTTCTGGTCTGGGATTCGA
ATTTCGAATGTAAACATTCTATTGAAAACGTTCGAAACAGTCGTCTTTGC
GCGCACATAAATATCAATCAAATTATTTACTCGCTAAGATTTTGTAAAAT
ACACGAATCGGAAAGCGGTTGGTAGATCATTTAGCAGAAAATTTGCCCAA
ATAAATTTTTTCTCAAAAATCGGGCTCCGTCACGTTCTGGGCATTGCCAT
TTTGCATCATTGTGCAAAAAATCAGAGCCAATCCTGAAAAAAGCTGGTAA
CAGACGGACTGACGAACGTACGAACGGGGGTTAATTTATAGGACCTCCAC
CGGGGTACCCGGAGGTAGGTCCAACAAAACGTGTACCGTAGGTGCAGACA
TAGAGTTGACGATGATAAATTTCGCTTCTTTTTGGTTAAGTATGGCAGTT
AAGTATTTTGAAACCCTAATCTTCGTCTGCACAAATGATCACTTTCAATA
TGATATTACGCGATTTATCCTGAGAGGGCTTAGGGCTCTAACTTCAGATA
GCGATCTTTGTTTGAGATGAATTTTCAGAATAGTAAATAATCATGAGTAA
TAATAATAATTTGAGAGGATTTTGCACGACAGAAGAAGTTTAGAAAAATA
AAAAAATGGTTTTTATTTTTAGCAGACAAAACGGTGGAGGGTAACAAAAT
ATGCGCGTATTACTTATCACCGAAATCCAGGAAATTTGTAACCAGCCTCT
TTAAAAGTTTTACGACAGGGTTAAAAAGAAAGTCATAAATCTTTTACTCT
AAATAGAATACCTCAGTAACCTAGTGGACTCCGAAAACCCCCCGGGCTAA
CTTTCAAAAAATTGAAATTACAACCGTGTTTATTTTCTAAAAAATAGAAA
TTCACCAGGTTGCAATAGTTTGACTTACATTTCTTTGGGTTGATGACAAA
ACATAGCAATCCCCATTTGCGTTCAGCACAGGAGATCTTCATTTCTGTCC
TGCATCAAGTAATTAACCATAGTTTGCACCCCCCCTTTTTAATAGGGGGG
GATGCCAACTTTCTGGAGGGCCTTTGTAGGGGGGGTACCGAGATCTGCCG
AAAAAACTAGGGGGGATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTAAAAAAAAAGGGGGGATAAGATT
TCATTACAAAAGGGGGGGATGGGTATATAGGGGGGGATGAAATAAACCTA
GGGGGGTTCATACCCCTCTGCAAACTATGTTAACCATTTATTATGCTGAC
CTAACATCGAAAAAAGGAGAACAAATAAAGTATTTATTTTCATATTGGAA
ATGAACTGATTTAAAGGTCTAAAAGTAAGATTACTTCGTAATCGTGGAGT
AGTTTAAACCATTGGTTAGCCCTAGGAGAGAAGTTTGACAATAAAGAGTT
AGATTGCTGGAAAACGTACCCAGGGTACGTTCTACCGTACGTGCAGCCCT
TAAGGGTCCCTTTTCCCAAGCTTCCTAAAGTGCACTGTGTAAGGATCGAA
AAGTGCACTCTACTAAGGGTGCGAAATTTGGAAACTCTGACCTTATTTTG
CCTTGAAATGGTAAAAAGTCTTCAAGAAAATGCACGATTTTTCGCCAAAG
TTTGTTCAAATTGGCTAAACTGTTTTCTGCACTTTAAGGATCCGATTTCA
TAGGCCTTATTTGGGCCACACGTACGGTCGTTTTTTAATCGAGTGACAAT
GTTATATCAATGTATGCCAGACAGACAAATGCCCTTCTGATAATCTTGAG
TGGTTTTGAGTAGGATCCCGTCTCATTATAATGATCATGTGCAGTTAGGG
CAAACACTGGACCAGTGAAGTGAGGGCTTTGGGCGAATCATGTACTAGTG
GAAATGGTAAATTGGTTAAATACTGGACCAGTCATATTCCGGTCTTCAGA
ATTAGAAATCCCTTAAAAATTACATATTACAACTGGACTAGTAAAACCCA
CTGGTCCACAATTTGACCATGGGCACTGTAAATTGCACATGATCCGATAT
ACTTTGTAAAATGCAACGGGCCTTACCTTTGTTTATATTATATCGAGACA
TCTTTTCCACCAGCAAAAATGATCAGTTTTTCAAACGGTTTTATTTTTCA
TTAATATTTTTTTTTGTATCAGCTGAAAAGGAAACAGCTAAGTTTAAATA
GATGCATGCACCTTGTGTATTGTATTGTGGTCATTGAGCTCTTCCAGAAA
ATGTCCGTACATTGGGGGATGGAGGAGTGGAGGATATAGTGTCCGGGGAT
TTTGAAAAGTCTAAAGAATTTGTCTTGTCCAGTGGCTACAGTAAACTTGC
TCTGGGGGCAATTTTGCTTTGTTTTAGGGTATCTTTTAATATCCAGGGGG
TCAACTGATGCTTGTCCGGGGGTTAGACCTGCTATCCGGGTGTCAAAAGT
CACAATATCGGGCGGTAAATGTCCAAAAAATGCTAAATCCTCAACCTCCC
ATGTTCAATTTTTTTCTGGAAAAGTCTATTTTAGTAAAGTACTCGTGTTC
AACTTTTGTAACCTGATGAACAAAAAATATCATTAAAAGCAATGTCTTGT
TGGAAAGCTAGCTTTGAGTGGATTAATCTTTTTGAATTTTTTGAAATATT
CAGATAAGGGAGATAAAGAAGATTCTTATTTTATACCACGAAACAATATT
TTTTTATTACTTTATTTTAGCATTCGGGGCAGCGGCAGACACTGAAGGTA
TATTTAACATCTATTGAAAATGGGCCATTCCATTTTAGCCTATTTTATAA
CCATAAAGGAGGGTGGACGAACCTTTCCAGGGGGTAATCCGGGAAGAATT
TTCAGGAGTTCTAAAGAAATTTCAAGATCTGACACATCACAAGATCTTGC
AGGATCTTGGAAGAACTTTCAAGATCACTTACCAAGAATTTTGACCAGGG
AGCGTTTGGTTCAACTTCATTGGATTGACATTATCTTTATAATCATAATC
TATAATATTTTTAGATTGTCGAAATGTGAAGTCATATTGTCACTTAATTC
CCAAATCCATCATGTGCCATTCACTTTTGAATTGGAAATGCAGGAAGTAT
TGTGGATTGTGTGTCATCAAAACCACTAAAAGACCAGGTTACCCTTCCTT
TGGTTATACCTCCTTGGTTACACTCGTTTTACGCATAGATATATAAAGCC
CGAAGGACTAAATGTCAAGCTTTAAGCTCTTCCAAGCAAAAAAAGTGAAT
ATCGCAAAAAATATTGCTGCTATTGTTTCGACAACCCGCGAAGCTTCTGA
TTGGCCAAGCGCTGAAATTCTATTGTTATGTCACGTGACCTAGGTATTCC
TACCTAACGTCGGCACACTTTTCATCCAAGGCATCTGGCCTTTCGGGCTT
TATAAATCGTTTTACAGATTACAATGGTTACTGGCGTCTCCAGTGCACGG
TTCTGTAACGAGCAGTTCAACTTTAATTCTTCAGTACTGTCAGAAAGACC
ATATTCACACGATACCGTTCCGTTGCACTCCGGTATGACTTTCGTTACGG
ATCGAGTGTGTTCATATTGGTTTCAGAACGTTTCGGAGCGAGAAAACGGA
GACGCTCCGTTCCGATGAAAAAAGTGGAGCGAAACAATTTCGATCTGTTT
TGCTTTGTAACGTCTTTTGACGTTTACACTTGTTTCGGAACCGTTTCGGA
ACCGCTTCGGAACGGAACGGAACCGTAAGGTCTGAATATGGTCTAAGTTT
AGAGATTTGTTTCAGTAAGTCAAATTCAAACGCAATTTCATCGGCTGCGG
CTTAAACAGGAAAGGTCGCTTTTGGGTTCGTTGGAAAGCTCTTTTCAAGA
TCCATCTTTTAAGCGTGCCCATTTTTGGAATGAGGTTCCAATAAAAATTA
CCAGCAACCGAAAGAATCGTCCATAAATAGACCTTTTCATAAATTACGTC
ACGAACATCACTTGCCTCATTTTGAAATTATTGCCATGGTGATTAACTCC
CAGCGGATTTTATTTAAACTACTTTCTTTTCATAAAAAATCATTTAATGT
CTCAAGGGACATAATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTCTATTTTGGTGTTTTTGCGACCCTACCTGGGACTCGTGGAGGTTAAA
AAAGGTACCCTGACCAGCGGAGCATCCCCGTAACCCATCTTGCCCTAGTA
CCCCCCCGGTAATCACCATAGTGATTGTTTGAAAACGAGGCAAGTGATGT
TCGTGACGTAATTTATGGAAAGGTCTATTAAACAAAATTTAGCTGGACAG
TACTGAAAAATTTCTAATAGTCTTCTCGGCAGAACTGTCTACGCTATAAC
ACAACTGTCTGCCATCTCGCTATATACTGATACACAGTTATTGGGGTAAG
AGTGTTGATCATGTGTGAACGACTAGGGGACAAGGTTTGCGTAATCTCAA
CTTCTCCACGATGTATCGATACCTAGCACAGTCACTGATGCTTCAGCACC
CAATTTCCTTCCCTTAAAAAAATATTTCGCGAGGACGCTTTTTAATGGAG
TCTTTTAAGTATCTGGGATTTCAAAGTTTTTTTTAAATCGTTTTTCAGAG
ACTACAAAAAGAATAACAACAAAACCAACAACGCCATCAACAACCACCAC
AGAACGTGAGTCGACAGTTGATAAAAGATTCTAATTTTCAGAACAAGATG
ATGATGAGTGAGGACGCTTTTTAATGGAGTCTTTTAAGTATATCTGGGGT
TTCAAAAGTTTTTTTTAAATCGTTTTTCAGAGACTACAAAAAGAATGACA
ACACAACCAACAACGCCATCAACAACCACCACAGCACGTGAGTTAACCAT
CGATAAAAGATTCTAGGATTCTAGTTTGAATTATTAA

Coding sequence (CDS) from alignment at sc0000052:108397..120033-

>TCONS_00005322 ID=TCONS_00005322|Name=TCONS_00005322|organism=Clytia hemisphaerica|type=CDS|length=1815bp|location=Sequence derived from alignment at sc0000052:108397..120033- (Clytia hemisphaerica)
AGACTACAAAAAGAATGACAACACAACCAACAACGCCATCAACAACCACC
ACAGCACGTGAGTTAACCATCGATAAAAGATTCTAGAGACTACAAAAAGA
ATAACAACAAAACCAACAACGCCATCAACAACCACCACAGAACATTGTCG
AAATGTGAAGTCATATTGTCACTTAATTCCCAAATCCATCATGTGCCATT
CACTTTTGAATTGGAAATGCAGGAAGTATTGTGGATTGTGTGTCATCAAA
ACCACTAAAAGACCAGCATTCGGGGCAGCGGCAGACACTGAAGATTTTTT
CATACAAACATCTCAACATGAAGAGCGTTGCGATTCTTATATCCCTGTTT
GTACTGGATGTAGAGACTACAAAAAGAATGACAACACAACCAACAACGCC
ATCAACAACCACCACAGCACGTGAGTTAACCATCGATAAAAGATTCTAGA
GACTACAAAAAGAATAACAACAAAACCAACAACGCCATCAACAACCACCA
CAGAACATTGTCGAAATGTGAAGTCATATTGTCACTTAATTCCCAAATCC
ATCATGTGCCATTCACTTTTGAATTGGAAATGCAGGAAGTATTGTGGATT
GTGTGTCATCAAAACCACTAAAAGACCAGCATTCGGGGCAGCGGCAGACA
CTGAAGATTTTTTCATACAAACATCTCAACATGAAGAGCGTTGCGATTCT
TATATCCCTGTTTGTACTGGATGTAGAGACTACAAAAAGAATGACAACAC
AACCAACAACGCCATCAACAACCACCACAGCACGTGAGTTAACCATCGAT
AAAAGATTCTAGAGACTACAAAAAGAATAACAACAAAACCAACAACGCCA
TCAACAACCACCACAGAACATTGTCGAAATGTGAAGTCATATTGTCACTT
AATTCCCAAATCCATCATGTGCCATTCACTTTTGAATTGGAAATGCAGGA
AGTATTGTGGATTGTGTGTCATCAAAACCACTAAAAGACCAGCATTCGGG
GCAGCGGCAGACACTGAAGATTTTTTCATACAAACATCTCAACATGAAGA
GCGTTGCGATTCTTATATCCCTGTTTGTACTGGATGTAGAGACTACAAAA
AGAATGACAACACAACCAACAACGCCATCAACAACCACCACAGCACGTGA
GTTAACCATCGATAAAAGATTCTAGAGACTACAAAAAGAATAACAACAAA
ACCAACAACGCCATCAACAACCACCACAGAACATTGTCGAAATGTGAAGT
CATATTGTCACTTAATTCCCAAATCCATCATGTGCCATTCACTTTTGAAT
TGGAAATGCAGGAAGTATTGTGGATTGTGTGTCATCAAAACCACTAAAAG
ACCAGCATTCGGGGCAGCGGCAGACACTGAAGATTTTTTCATACAAACAT
CTCAACATGAAGAGCGTTGCGATTCTTATATCCCTGTTTGTACTGGATGT
AGAGACTACAAAAAGAATGACAACACAACCAACAACGCCATCAACAACCA
CCACAGCACGTGAGTTAACCATCGATAAAAGATTCTAGAGACTACAAAAA
GAATAACAACAAAACCAACAACGCCATCAACAACCACCACAGAACATTGT
CGAAATGTGAAGTCATATTGTCACTTAATTCCCAAATCCATCATGTGCCA
TTCACTTTTGAATTGGAAATGCAGGAAGTATTGTGGATTGTGTGTCATCA
AAACCACTAAAAGACCAGCATTCGGGGCAGCGGCAGACACTGAAGATTTT
TTCATACAAACATCTCAACATGAAGAGCGTTGCGATTCTTATATCCCTGT
TTGTACTGGATGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003028XLOC_003028Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005322-proteinTCONS_00005322-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005322-exon-sc0000052-1575043694:119964..120033TCONS_00005322-exon-sc0000052-1575043694:119964..120033Clytia hemisphaericaexon
TCONS_00005322-exon-sc0000052-1575043694:111137..111163TCONS_00005322-exon-sc0000052-1575043694:111137..111163Clytia hemisphaericaexon
TCONS_00005322-exon-sc0000052-1575043694:110747..110869TCONS_00005322-exon-sc0000052-1575043694:110747..110869Clytia hemisphaericaexon
TCONS_00005322-exon-sc0000052-1575043694:108629..108685TCONS_00005322-exon-sc0000052-1575043694:108629..108685Clytia hemisphaericaexon
TCONS_00005322-exon-sc0000052-1575043694:108397..108503TCONS_00005322-exon-sc0000052-1575043694:108397..108503Clytia hemisphaericaexon
TCONS_00005322-exon-sc0000052-1510915933:119964..120033TCONS_00005322-exon-sc0000052-1510915933:119964..120033Clytia hemisphaericaexon
TCONS_00005322-exon-sc0000052-1510915933:111137..111163TCONS_00005322-exon-sc0000052-1510915933:111137..111163Clytia hemisphaericaexon
TCONS_00005322-exon-sc0000052-1510915933:110747..110869TCONS_00005322-exon-sc0000052-1510915933:110747..110869Clytia hemisphaericaexon
TCONS_00005322-exon-sc0000052-1510915933:108629..108685TCONS_00005322-exon-sc0000052-1510915933:108629..108685Clytia hemisphaericaexon
TCONS_00005322-exon-sc0000052-1510915933:108397..108503TCONS_00005322-exon-sc0000052-1510915933:108397..108503Clytia hemisphaericaexon
TCONS_00005322-exon-sc0000052-1491911889:119964..120033TCONS_00005322-exon-sc0000052-1491911889:119964..120033Clytia hemisphaericaexon
TCONS_00005322-exon-sc0000052-1491911889:111137..111163TCONS_00005322-exon-sc0000052-1491911889:111137..111163Clytia hemisphaericaexon
TCONS_00005322-exon-sc0000052-1491911889:110747..110869TCONS_00005322-exon-sc0000052-1491911889:110747..110869Clytia hemisphaericaexon
TCONS_00005322-exon-sc0000052-1491911889:108629..108685TCONS_00005322-exon-sc0000052-1491911889:108629..108685Clytia hemisphaericaexon
TCONS_00005322-exon-sc0000052-1491911889:108397..108503TCONS_00005322-exon-sc0000052-1491911889:108397..108503Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000052supercontigsc0000052:108397..120033 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	10.2633	8.97377	3.88532	16.4207	1.27271	1.5066	11.9691	18.4668	7.11891	13.375	15.7588	18.4688	45.8232	57.6015	0	0.296671	10.1343	11.6235
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005322 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top