TCONS_00005319 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005319
Unique NameTCONS_00005319
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1115

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005319 ID=TCONS_00005319|Name=TCONS_00005319|organism=Clytia hemisphaerica|type=transcript|length=1115bp
TCGAGATCTTAGTGTACTCTGTCCATCAGTCCAGAAAAGTTTTTGCAAAA
ACAGTATTTATCAACAAACCTGTCCAAAGCATTGTGGGTTGTGCTCAGAC
CCTTCTACAAAAACCACTGAAGGACCGGTGCTACCAACAAAACAGTTTAC
TACGACCGCGGCTACAACAATCCCAACGACAAGAAGATTGACTACAAAGA
AACCTATCACCATAGCAACGACCATGTCTACAACACCAACCCAAACTACA
ACCAAACCTTTAACCGTATCTTCAAAGACCATGTCTACAACACCAACCCA
AACTACAACCAAACCTTTAACCGTATCTTCAAAGACCATGTCTACAACaa
acaaaattacaaaaccTACAACCTTATCAACGACCACTCCTACGCCGACA
GCCCAAACCACAAAAAAGCCATTTACAAAGCAGACAACTAGAAGATCAAC
CACATTGGTACCTGCTACACCAGACAAAACAAACGCACCACCACCTAAAG
GATCTTGTGGATATTCTCAAATCCCTCAATCTAGAATCATCGGCGGCAAA
GATACAAAACCTCACTCATGGCCCTGGCAAGTTGGAATTTACAGAAATGG
TAAATATGCTTGTGGAGGAACGCTTATCGACAGTCGTTGGATTGTGACCG
CTGCACATTGTGTTTACAGAAGACCTGTCAGAATTTTCACCGCAAAGTTA
GGAGACCACAACAGAGACATCGTTGAAGGAGAACAATCCATCCAAGTATC
TAATTATATTGTCAACGAAAATTACCAAAACACACGACTAAACAATGATC
TAGCTCTCGTGCAGCTTGAAAAACCAGTGATCTTTGGAAGAACTGTACAA
CCTATATATTTACCAGAACAAGGAGAAAGGACAGATGTTGGAAAGAAATG
CTACGTGACAGGTTGGGGCAAGACAAGCAATCCTGGGATGGTGAACAACA
TCCTTCAACAACTTGCAATGACGGTACAAAACAAAACACGATGTTCAACA
ATGAACAGCAAATATGCACCGTTGACTGGTCAAATGTTGTGTGCAGCCAA
TACTGAAGTGGTAGAGAATCAATCAGTTTGTCATGGGGATTCCGGCAGTC
CGTTTGTTTGCCAAG
Run BLAST on NCBI

transcript from alignment at sc0000052:92114..107947-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005319 ID=TCONS_00005319|Name=TCONS_00005319|organism=Clytia hemisphaerica|type=transcript|length=15834bp|location=Sequence derived from alignment at sc0000052:92114..107947- (Clytia hemisphaerica)
TCGAGATCTTAGTGTACTCTGTCCATCAGTCCAGAAAAGTTTTTGCAAAA
ACAGTATTTATCAACAAACCTGTCCAAAGCATTGTGGGTTGTGCTCAGAC
CCTTCTACAAAAACCACTGAAGGACGTAAGAATATCACATATATATAAAA
ACATCACGAAATCATCATTTAATCAAAATTGTTTTTGGAAAATTAAGTAG
AAATAAAGTAGATAATTTTGAAAAAAAGAAGAATTCAGTCAGTACCCCCT
TCAGTATCCTGTCCGGGATAGGTATCCTGGTATCGAGAAATACAATATAG
AACTATTATAGTCTATCCTCACAGATAAATCTTCAGAGAAAGGCACACTT
TGATCTTAAGCTGAGATAGGTGACATCAACTCAAACAAAATTGTGTAAAT
TAATCTATAATGCCAGACTTGAAGTTGTTTCAATGTACAAGCTTTTTTTA
ATAAGAAGCAGTAAATTTTGACTCAGGCCGGGCCGTTCTTACTTTTTTGA
AATTTTCTGGCTTAAATTTTCCTACGATGTTCTTTAATAATAATTTGTTT
AATACGCTTAGTTTCAAAATCTGTTAAAATCAGTAGTCTTAGTAATTTCT
TAAATCTAAGGCTAAGATTGTTCTTAATTTGTTCTTAGGATTAGGCCAAT
TTTCAGCCTCTTAAGGCACAACGAATTTTTCTATACAACCAATAACTTCT
CTTAAGGGCTCTGACCATAGTCGAAAAATTGCTTTAAGTATTTGAACATG
AAAGTTATGTTTTAGGTTCTTTAACACTTTTGACAAAGAATTGCCTTTAT
AAATTGCTTTTTAATCTAATCCCTTAAGAGTAATTAAGAATTTAATTGCA
AAAATGACGTTATGAACTTTAAAAAGACGTTAATAATATGTTGCGTCACT
TTCTTCTATAAAAAGTGCTAAGTTTTAATGGGTAATTAACCTTTTTGTTT
AGACGCTTTTTCAAACTGTCCGCAAAGAATTGAACTGTTTTAAATTTTTC
GGAAAAATTTTCTAAATTAATGCATCAAAAGTTATGGCTGTTTTTCTATG
AAAAATTGGGATGGATAATTGGTTAAAAAGCACTATTTTCAAGATTTTAA
AGCAAATAAGCTTTAAGAAAAACTTTCCGAAAAAACAGTTTTAGTTTGAT
AAAAGATACACCGTCTACCGCAAAAAAAATTTAAAATGTTTTTTCTTCGC
CGAAACTAAGCTCTTCAAAGTTGAAATAATCTTCTTTGCGAAAATCTTTT
CATTGCGATTCTTAAATTTTCAGACTCACGGATAATTGGCCTAACAGAAA
ATGTATAACATGCCAAAATTTTGTGTGCTACATCAAGTAGAACTGGTTGT
TTTGACACTTTACGCAAACTTTAAACCAATTTCTTCAAGACACGACAAAT
CTTTCTACACAACCAGTTACTTTTCTTAAAACTACTTCTAAAAAACCTTC
AACCTCAGCGGTGCTACCAACAAAACAGTTTACTACGACCGCGGCTACAA
CAATCCCAACGACAAGAAGATTGACTACAAAGAAACCTATCACCATAGCA
ACGACCATGTCTACAACACCAACCCAAACTACAACCAAACCTTTAACCGT
ATCTTCAAAGACCATGTCTACAACACCAACCCAAACTACAACCAAACCTT
TAACCGTATCTTCAAAGACCATGTCTACAACAAACAAAATTACAAAACCT
ACAACCTTATCAACGACCACTCCTACGCCGACAGCCCAAACCACAAAAAA
GCCATTTACAAAGCAGACAACTAGAAGATCAACCACATTGGTACCTGCTA
CACCAGACAAAACAAACGCACCACCACCTAAAGGATCTTGTGGATATTCT
CAAATCCCTCAATCTAGAATCATCGGCGGCAAAGATACAAAACCTCACTC
ATGGCCCTGGCAAGTTGGAATTTACAGGTGATAATCATAGATTTATAAAG
CCCAAAGGGCTAGATGGCGTACTTTAAATAGCTGAAATGTGTGTCGTGGT
TAGCTAGAAATCCTACATAGGTCACGCGACATTACAATAGAATTTCAGCG
CTTGACCAATCAAAAGATTCACGGGTTTTCGAAAACAATAGCAACAATAT
TTTTTCCGATATTCACTTTGATTTGCTTTCTTTGCCCTGTTTAAGCCATT
GCTTAAAGCTTGACATCTAGCCCTTCGGGCTTTATAAATCAATGGTGATA
ATCAATTTATTGGACAGGAATAAAAATAAACCTTGTCGTTATTTGATGTC
TAGGCTTGTCTGATTCAAACTCTATAGATAACTTCCTATAAAAAAACTTT
TCATTGGAGTAGGATGAGCAAAAGCCTCGGCTAAGCCATTTTACAAAATT
CGTGACTTTCTTATAATATAGTTAGACCAAGCTTAGTAATCTAGACCTTT
CAGGTATTAGAGTGTTAAAAAATAAGTTTTTGAATCGGGTAAAGGTTTGT
TTTTGGAGATTATGTACTGGTAGACGGTGATTTTTTCATTGACTTAACAA
AATTCGTACACCCCTGTTAATGAGATCATTTCGTCGTTCCTAGTTTATCA
GTAGGGCACTTGATTTGAGTTTTCTTCAAAGTCAAGTGAGATTACAAGGA
AAAAAAGTTCTTAATTTTAAAGGACGCTTCCTTATGAATAGGAACTTTTG
GAATGTAGCGAAACTTGTAAAATGAGTTTTCAAAATTTCATTAGATGACA
TTTGAGATTGACATTTTTGTTTCAAAACCTGTAAAATCTTCAATAAAGGT
ATTAAACCAAAATTAAGACTGTATACCCTTTCAAAAATGCATGCAGACAC
CTGTTTCCTTTTAGCAGCATTTTGTAAACATATTTTTCAGTATTCCCTTT
TTAGAAACAGTAAAATTAAACATTCTTAAACAGAAATGGTAAATATGCTT
GTGGAGGAACGCTTATCGACAGTCGTTGGATTGTGACCGCTGCACATTGT
GTTTACAGAAGACCTGTCAGAATTTTCACCGCAAAGTTAGGTAATACTCT
GAGGTTTCCATAGGAGAACCCAGGGAGGTTTCCATAGGAGAACCCAGGAC
ATGTTTTTTTATTTTCTGGGAACAGGGCGACGGCGCAGTTTTCCGTCTGA
GCAAATTTATCAAATCACTACAATTCAAATACTGCCAAGTCTCTCTAATT
CGAACCTCTATTATTCGACTCTCTCTGTAATTCGAATTAAAATATTAGCC
CCCTTAGGTGGAAAGTCATATAAAATACTTTCTGTAATTCGAATCTTTCT
CTAATTCGAAGAAAATCCTTAGTCGCTTAAAGATGGAATTAGATAGAGTC
AACTTTGATCTCATGAAAACTAACAAAGTGAATTCCGATTAGAAGTATCA
ACTTAAAACAATTTAGCTCTAGTTTAGACGGTCAACTTTTCGCCCTGCCT
ATTCGAATTGTTAATTAAAGTGGGCAGATAGTTTAATGTCTAAAGTCAAT
GCATTGCCCTCTTTTGACGTCAATGCAATGACTTCTTTCAACCCTTTTCA
AGCAAAGATTTTAACTGCCCACTTTTTGCCCACTTTTCGCCTACTCTAAG
TCTAACAGCTAGAATAGGCAGGGCAGAAAGTCGGCCGTCTAAACTAGAGC
TTAGTATCTTCTGATACCGTAGGATGGGTACAAACTTTCTCATTCCCGGG
AAAACTTTCCTATCGCCACTTTACAACGGAAAAAGGTCCAACACTCTATA
TGGGTAGGAAGATAGTTTCAACTTGTGTGTTATCTACGCATATGTACGCA
GCAAGTATGCCGGTATGCCTGTAAAAACAGCAAAATAGATCCCAGAAATA
TGCTGATGTTTTCCACGGAAGAAGAAAGTATTTCACCCTACGGTAAAATA
AAACGTAAGAGAACAAGCCATTTTCGTAATTTTCAATCACTAGGCGACCA
CGACAAAGACGTAGATGAAAATGAACAAACGATCCAAGTATCTAATTATA
TTGTCCATGAAAATTACCAAAACCCGCGGTTGAGTAATGATCTAGCTCTC
GTGCAGCTTGAAAAACCAGTGATCTTTGGAAGAAATGTACAACCAATATG
TTTACCGAAACAAGGAGAAAGGACAGATGTTGGAAAGAAATGCTACGTGA
CAGGTTGGTTAAAAAGTTACACGTGTTTTTATAAGAACAAACTATATAAG
AACATAAGGCCTCGATGGCTAAAATGTTAAGAACAAGTTAAGAACATTTT
AAGGCTTTAAACTCAAAAAGTTAAGAACATCCGAAGGCTTCAAATATTTT
GGATGTTGTTATAAAAAAACGTGTATGGCTGCATGGAGCAAAGTTTTGTA
CTGGGCCAAGGCTAGTGGTCAAAGCAAGGATTTTCGTCAGATATGTAAAA
CGGATTTTACACAGCCAATTAGCACATATTCTTGAAATTTTTGGTGAAAA
TGGAAAAGCCTCTTTATAAAATTTTCCAAGACAGGAATCCGTCTACAGCG
GAAGATATTTTGAAAAGAGCTGTTAAAAATGAACAATAAGCAAAGCAAAA
ACCCAAACATCATTTGAATGTTGTGCCGCTTTGCCTGCATTTATTATATG
AAAAGTAACTTAAAATACAATCCCAAATCAAATCTCAGGTTGGGGCAAGA
CAAGCAACCCAGGGATGGTGAACAACATTCTCCAACAACTTCCAATGACA
GTACAAAACAAAACACGATGTTCAACAATGAACAGCAAATATGCACCGTT
GACTGATCAAATGTTGTGTGCAGCCAATACTGAAGCCGTAGAGAATCAAT
CAGGTATCGTAATGCTTTCAGCCACCCACTTCTCACAGACCCGGTAGGAT
TTTTTCAGCCAGTGGGGATAAAAATAACGGACTAAAACTCGATGGGGATT
GATATTCCTGTTTTTTATGGCTGGGGGTTTCAATTATTTAGTTTTCAAGT
GCAAGAAAATTCAGTGGGGATGAGATTCAAGAATCTCATAAAGAGAATGC
CTTTTAAAAGAACTCTCATCAATCAAAATTTTACTTTTGTCACTTTTCCT
TCTCTAGTTTGTCATGGAGATTCTGGCAGTCCGTTTGTTTGCCAAGAAAG
CAATGGTTCATGGACATTACATGGTTCGGTGAGCTGGGGATCACCACAAT
GTGATATCAAAGATGCTTTCACTGTCTTTGCAAGGATCAGTGAATTTAGA
AACTGGATTGACCAAAATATAAAATAGAAATAACTGTTTTACTCGAAGAT
GATACTTTCAAAGAAAAAGAGTTCTAAAGTCTGAATCATTTTCTTCTTCA
TTCCCTTTTGTTCTTGTACTTTTCTGTTAGTAAAGACTCAAACACTCAAG
GGGAAAACAAATTTGTTTGAATGATGGAAATTTCGAGTCATGGGGTAAGG
TTTATAAGGTATTTTTAACTAAAAGGACCGTAAAGCTTGTTCAAGTCAAG
GAGACATTTTGAGTTATGGGGTTCGAGTTAAAGGGGCTCCACTGAATTCA
AATTTGATTATCTTTCCAACAAGCTCAAAACCGTAATCTAATTCGAATTC
TATCAAAAATTACAACCGTTTTTGTCATAGCTGCAGATGATATTGAGAGA
GACTGTAGTGTTTTTTAAATAACCTCGACACAGCTCCTTCTCATAGGCCC
GGTAGAATTTTTTCAGCCAGTGGGGGTGAAGGGGTAACGGACTGAAACTT
TATGGATGGGGATTGAAATTTCATTGTTTTCAAGTCAGAAAATTCAGTAG
GGATTGGAGAAAAGCATAATATTTTGCGGACAATAATTGGAGTATAATTT
TCCACTGGGGAAGAAATTTTGGTCAATTTTTTCAGGAAGGGGTTCCAGTG
GGTCTGTGATAAAGGGGTGTCTTGACTTACGACTGGTTATTTTTAACTTG
TTGAAAAAAAAACAAAAAACGAATACGATTCATCGGTTTCTAAAAGGTTT
TCGAAAGGTATTTAAGAGCTTACAGGACTCTCGTCCACTCGGCCTCCGTT
GCATGCCAGACTACTGGTAGAGTTACGAGTTGTGAAAATTTCGTATTTCG
TGCCCATACAAGGAACCATTTGGGATCCTACCATAGATTTATAAAGCCCG
AAGGAAAACGAAGGAAAAGTGAATATCGGAAAAATTATTGTTACTATTGT
TTTCGAAAACCCGCGAAGCTTCTGATTGGCCAAGCGCTGAAAATTCTATA
TAATGTCACGTGACTTAGGTAGGTTTTCCTACCTTAACCACGGCACACTT
TTCAGCAAAAGTACGACATCTAGCCCTTCGGGCTTTATAAAGATATGGAT
CCTATTGTTACACATGCGCGACAAAATAATTTTTAAGTCCGTCGCAACAG
GTTAAACTTCAAAGGGAGCTGAACACAGGGCTGCTCACAAATTTTGATCA
AAGTTGTGTGTGTAATCAGTTATATAGACTGACTGGTCACATTTCAAAAA
AGTTTTTCATTAATTTTCACGTGATCATTAATTTTCTTTCTGAAATGAAG
GCAAGCGGTTCTTTAAAATTAAATATTGAGCTACACTGAAAATTTAATAT
CTACCAAAACTTAATATTTACGTTTTGAAGAACGATACCATCCAATAGGG
TATAGACTTTAAGAGCAGGTGCATGTTTGATATTACTTAGCGCAAATAAG
AGAAACAAGTCTCGTTAAATTAAAGTTGATGAAAAAAATAGTTTGAGTTT
TAGTCACACCGTAGCCTGCAGTTTGATATCAAAAATACCATTTTAAGATG
AAAACTGCAGCAATCATTGTGATTTTGGTCGCCCTCAATGTTGGTATGGA
TATTTTTTTGTCGTCAGACATTCATTCATTTTGATTTCAACATTTTCAAG
GCCTTTTTTACGAAGTTCAACGTGCTCGAGATTTCTTGTTATTAAGCAGG
GATGAAATATTGAAAGTTTTCGAGAGTCGACGAATTGATACATTTGAATT
AGTTTTGTGATCAATATTTTTGTATTCTTTATTTTTTAAATATTTTTCTT
TTGTTACATTTCAGCAACAGCGACACATAAATCAGGTAAATTTGTTCATC
AAACAAAAAAAGAAGCCAAATAACACGTCATACTTCATATTTTTGCCCTT
TATATAAGCATCCAAATAATTATTTTCCCTCTTTGTTTAATCCTTTAAGT
GCCAATGTCAGTCGTATATATCAGACATGGGCTATGTATGTAGGAGGACA
AAGCCCTCCTGTAATGCCCAGTTTGAGTTAAAAATCATCATTTTTTTTCT
AACTCGTAGGAATTGAATTGGGTTTCATGGTCAAGCAAAAAAATAAATAA
TCAAAAGTGAGTCTTTTCAGCGAGATTTTAAGCCAAAAAGTAAAAAAAAT
GCAAACATTTGACAAAAATCCATTTTTTTAAGATCTTGACCGTTTTTTGA
CCATTTTTGGAAACGAGTGATCCAAGAACCTCCATTGGCCATGATTCTTT
GACCTTTGACCGTGGTACTTAAAGGGTTAATAGCAAGGAATCAGCCACTA
TAGGCCATTGAGTCCTTGATCACGCTATCACCAATGCTGGACAAAAGGTT
GTAGACAAATGAAATTTCAGTGAAAAATGATGAGAAATAGAGCAAAAATG
ACTCTTCAATTGAGTTGCTTTTGAGGGAACCACAAGCAAAAAATCAGCGT
TTCGATACTGGTGTAAGCCAGTTAATCAATCCCTTGTGGTTAGGCTGCAG
TGGGTGACTTTGGAAAGCACCCAGAACCTCATGGGAACTTGTTTTTGATC
GATATTGAAGTATTTTGCAAATATTGCAGAAGTCTATAAACCTTTTGTTC
ATGATTGACGCCAAAAATATTCTCTCATCACGCAATCACTATTGTCGCGG
CGCTCTTTAAGAGGGTGGCGCTGAATAGAGGAACTGCAGTACTCCATTTT
ATATGTTATAGGATGTCGTGATTTAAGCTCGACCTGCTCGAAGTACAGCA
AAACCAACTGTAGATCGAGCAAGTTTAACAAATATTGTAAAAAGTATTGT
GGATTATGCTCGTCAGGTAATGTTTCAAAGCACTAATTTCTAATTTCATG
ACTGAATGTGGCTTACCATATAAACGGATTTACAAGACGGCTAGGGTGCT
ACTGTACAATGCGTTAACTTACGGATTCATGCTCCTTGTAGATACACTGC
ATGTTTTGTAGAGGTCTGTGATTCAGACTAGGTGTAAAACGCCATAATAA
TGCTTTTATTCCCCTGCTTGACATTTACATGATTCGAATGTTTTAAAATT
CAAAATAAAAAAGATACGAAAAACTAGTGTTAAACATATGATCGCCCCCA
AACCAGAAGAAAAACGGTCATAATCTAGGTCCTTTCATATTTTTTAAACC
AAAAAATAGAAGTTGAAGAGGAAACAACAACAATTTCACTTTAATCTTTA
CAAGGAGATTTAAATCTAAAATTGTGCCCAATTCTTGAAAATCTTCCTCA
TGGTAACAGTGTTAATGATAGGTTTTCGACCGGACCCGAAAACATGATTG
CCACAGTACTTATTCAGAGATCGTAAAATTTAGTCGCATTGTTTCTACCA
AATCTGTTTACTCTTTAGAATGTCGCGATTATAGAAAATATTGCTACAAG
GTCCCGAAATCGTCTTGTATAAAGAGTGTTTATAAAAAAAGATGTCCGAA
ACATTGTGATGAGTGTCCGAAACCCACCAAAAGTATGACAACAAGAACGG
TAACCACGGCAACAAGGACACCAAGGACCACAACAAGAGAAGGTTAGTTT
TCCTTACTTTTGGTTTTCCATCATTCTCTTGTTTCTCATCGAAGGTTCAA
TAAGAATATTTTCGTTGATTGAAGGATACCAAGTGCAAATTACTACCTTA
TCTGTGGAAAATTTCATCGTCTAAAAGTGATGAAAGAATTGCTCGGTTAC
CAAATCTTTAGCCGACGAAAGTTTTTAGCCGACAAAAGAATCCGAGGTAA
TCGATAAGGTATTATAATGAAATTCACAGATTTTAAGGACTGACGTTCCT
TCTGATAGTGAACTCGAAATCTCTGGCTTACCAGGCAATTAATCGTTTTG
TTGCTACAATCGGAACCGAAATATTTGGCACAAAAGGGGAATTCCCTCAA
AACTATAAAACCGCAAGTGATTTTTAAGTGCTCTAAAGTACGGTTAGAAA
GTAGAGTTTTAAATCTGAGTTTTAACATTAGACTTAAGGCTCAGGAGGAC
CTTATAGGATCCCATTATCTAAAAGCTCAAAAATGTTCCAATATGGCAGA
GAACATATCCTGGCAGCCACTTTAACCCCTCCCAAATTGAAAAATTAACT
GGAACAAAGTGGATATACTGAAATTGCAATTCTCGCCCGAGCTTTAAATT
CTGGAAAACTTTAAAATACCCAAAATTGCCAATATATTTGGGCGCTGATT
GTAGACTAAGTGATATTCTTTAAAAAAGTATTATGATCTAGTGCCCAATC
CCCAATCAATCCTAGAACTTTTGTTTATTGTTTAGAATGTCGTGATTAAA
ATAAATTTTGTCCTTGGGTCCCAAAAGATTCATGCAAAAGGAGTATCCAC
CTTAAGAAATGTCCTAAACATTGTGGCTTCTGCTCAGAGCTTACCACGCC
AATGAATACTAAATCAACAACTACGACAACTTTTTTCACTAAAGCATCAA
CAAGATATACAACCAGGAGCACAACACCGACAACAAAAGCTAAGACAACT
AGAAAACCTACAAAAGCAACAAAAACAAAGCTGCCAACAACAACCGCAAC
ACCGACAACAAAACAAACGACACAAGGAAAAACTACAACAAAACCAACAA
AGATATCTACAACAAGGACGCTTCACACAACAAAAACATTGACAACACAA
AGAGCAACATTCACAACAAAAGAAAAGACTACAAACTTACCAACAACACA
TCGCCCATCCACCGCATCCACCACCAGAAGAACCACACTGGTACCTGCTA
CACCAGACAAAACAAACTCTCCACCACCTAAAGGATCTTGTGGATATTCT
CAAATCCCTCAATCAAGAATCATCGGTGGTAAAGATGCAAAACCTCACTC
ATGGCCCTGGCAAGTTGGAATTTACAGGTATGAAGCACAAATATCTGTAA
AGCCCAAAGGGCTAGATAGACAACTTTAAGCTTTTTCCAAAAAAATTTGA
CTTTTTAAATTCCGTGCCGATGGATAGGATCTAGCATTTTAATTGTTTTC
GGAGCGCAAGATCAAAAAAAGTAGGCGGCAAACGCTATTTCGCATCTCTC
AAACCAGTAAAATTGCTTGTTGTTACGTGATTTCTTTGGTAGGAAATCCA
ACCAAAACTTGCTTCACTTTTCGATAAAAGCCGCGGATCTAGCCCTTCGT
GCGTTACAGATCTGTGATATGGAGCCTTCTTATTTTCGTGTAACCAGTCT
GATTCGCAGTCCTTTGCAGTTTACTTTGCAATAAGAAACCTTTTCATTGG
GAAATTAATCGACCTTTTCATTAAGAACGTTACGAACATCACTTGCCTCG
TTTTGAAATTATTGCCATGGTGATTGACTCCCAGCGGATTTTATTAAAAC
TACTTCCTATTCATAAAAATTCATCTACTGTCTCAAGAGACTTAATCACC
ATGGTAATTGTTTGAATACGAGGCAAGTGATGTTCGTGATGTAATTTATG
AGGTCTATTGAGAACTTAACCTTCCCTTTAATCACTGAACATCAAGTAGA
GAGACATCAAGTGTCATATTTTATATAGTATGAAATCATTGGTACAACTC
GGCCGGGGATTGAACCTACAACCTTACGCATAGTAGCCGAATGTTCTACC
TGTGCACCACGGTCGCTTTAAATGATCTGTTGAGAAGAAACGTCTCCTTA
AGAACACCTTAAACATTCTTAAACAGAAATGGTAAATATGGTTGTGGAGG
AACGCTTATCAACAGTCGTTGGATTGTGACCGCAGCACATTGTGTTTACA
GAAGACCTGTCAGAATTTTCACCGCAAAGTTAGGTATGAAATTCTCGAAA
GCGTTTTTGCAAGTAGTGGCAAAATGTAAGCTAGAGATGAATTTGCCACT
ACTGGCAAAAAAACAGAATGTTTACTTAGAAAACTTTTGCTTATTTTCAG
CCCTAATTTATGCTTATTTATATGCTTCGACTTCAATTTGTTGATTTTCT
TTTGGTTCATGAAAATTTCATTGATACGGCTCAAAGAATGAAGCAGCACT
GCCCTAAAATAAAAACATCTTTTCACATACTTTAATCGTTAGGAGACCAC
AACAGAGACATCGTTGAAGGAGAACAATCCATCCAAGTATCTAATTATAT
TGTCAACGAAAATTACCAAAACACACGACTAAACAATGATCTAGCTCTCG
TGCAGCTTGAAAAACCAGTGATCTTTGGAAGAACTGTACAACCTATATAT
TTACCAGAACAAGGAGAAAGGACAGATGTTGGAAAGAAATGCTACGTGAC
AGGTTTGTAACACCCAAAATAACAAACACTTTCAAGAAGGCTTGACTGAC
AGACAGCTACAAGTTATTCTGTTGAAGCTAAAAAGATCATAAATTTGGAT
TTAATACAGGTTAAGTCGCGGTTTAACTTTTATATGATAAGCGCATCATT
CTAATGGCTGGGTGGTTGCCCTCCGCCAACTGAGTCTACTTTGCTCGTAG
CCGCTTGATGTCATGTTCATAATGGCCATCGCAACTCCTTGTCGACGCTG
TAACTGGAAGCTGAGAGGAAAAATATTTTTTGCCTCCTTCTCTCCCTGCA
GTAATGGTTGTAGGCGATCCTCACTTATTTATGCTAATATTGTATTTATC
GGGACAAATTTCCCCTAAAACTTATTATTCGAGGATTAGCCATAATTTTA
CGCTAAACCCATATCTACTGACTCACACTTTACTTTTCAGCCGTCTGACT
ACTTGATTGTTTATTTTTAATTCTAACTAAGTCATCGGCAAATTGAAAGT
TAAAGTCATAACTTTTGGAAATCCCTGTAGTGAATTACACTAAAGTCTAT
TCACGATAAGTTAAGATATTTATTCAATATAAAGTTATGATACAAAGTTA
ATAAGTGATTGACCCCAAAAAACAGCAAAAAACTGCAGAAAACAGCGTTT
TTAGACGTCAATCAGCTAATAACTTTGTTTGATATCTTTTGACTGAATGA
TTATTTTTGAGAAATTTTTTCACAGTGATGACGTTCGATGATCAAGGATT
CACTTCAGTGAAAATGATAGTTATAGCACTTTTCTACAAGATCTTCATTT
TTTTCTTCTTCATTTTCGTCTTCATTTTTAGAATTTTTTTAAAGATTTTT
TTATTTCAAATTGTTCCACTCACTAATATCTTTCCAATGATACCAAATTT
ATAAAAATTGAAGAATTCCTTCAAAAGTTATAGGTGAAAGAAAAAAGAGG
GCACACTTATCGTGAATAGACTTTCATATATTGTTTAGAAAACCCATTCA
TAATAAAAGTCCATTGGAAACTTCGTAACTATATAGTGAATCCCTTGAGA
ATGGTTTTTACATGAGAGCAAAGCAGAGTGCACACCATTGAGTTTGAAGC
CCGAAGAGCTGGAGGCGAGACTTTAACACTTCTCAGGCAAGAGCAATTGA
AGCCACTTATTTCCCATCAAAACGCACAGAGAACGCGCTGTAATCATTAC
GACGGATTGTATCTAGCGGTTCCTTTGTTTTGGATGACTACATTTTTTGA
AATCTAGCGATAGATTTTAGTTTCAGTCCCGCGTTTGTGTAAAATCTACG
CGCGGGCGTTCTGGATGGGAAATAGGTGGTTTCATTTCCCATCCAGGAGT
CTCGCCTCTAGCCCTTCGGGCTTGAAACTCAATAGTGCACACCTATAGTC
AAGGAACTTTTTTTCCTTTTCCCAAATCAAATCTCAGGTTGGGGCAAGAC
AAGCAATCCTGGGATGGTGAACAACATCCTTCAACAACTTGCAATGACGG
TACAAAACAAAACACGATGTTCAACAATGAACAGCAAATATGCACCGTTG
ACTGGTCAAATGTTGTGTGCAGCCAATACTGAAGTGGTAGAGAATCAATC
AGGTACAAGTCTTACTTCAGGCACCCAAATATCTCACAAAATCTTTTCAA
CATCTTCTCTGATGTTGAATACAACTACGGATCCTTAATGTATAGAAGTT
TGCATAGGACCGAAATACAAATACCTCCTTCGTCGATCTAGGTATGTGAA
AACTACAATAACATCAGTGCCGTAGCAGCTGGGGGGGGGGGGGANNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNACGTTTTTCAGAATTTAAAGTTCGGGCGAGAATTGC
TATTTTAGCACTTCCACTTTCTTCCATTGAATATTTCGATTTTAGAGGGG
TTTGGTGGCTTCTGGGCTATATTCCAAGCCTCATTCGAGCAAATTTGAGC
TTTTAAATCCTGAGATCCTAAGCTCTTAAGTCTTAAGTCTCATGTTAAAA
CTCAGAGTTAAAACTCTACTTTCCAACTGTAGTTTAAGGCGCTTAAAAAT
CAATTGTGGTGTTCAAAATTACAGCGGGAACTCCCCTTTGTCTCAAATAT
TTCTTGAAGGATTGTAGGTCTGAAAACTGTGAAAATCAATTACACCCCTT
TCTCAGTGACCCGATGGCCTGTTTGGATAAAACGGGAGGAAGGTTAATAT
TTAGTTAAGTGGGTGAAAATCTCTTTGATGTTTTCAATGTGATGAGATTC
TAGGGATTCTAGGGATTCTAGATTGCAGCGAATCATTCATTAGCCGTTAA
TGTTTTTTGTGGGGTTTTAGTATAGTTTTCCAAAATAGCCATAGAGTTTT
GGAGCATTTTTTTCTAAAGGGAAGTGCGGGGGGAGGGTGGGTTCCTGTGT
ATCTGTGATGCAAAAGTGCATACAATCAGATTTTGAATCAATTACAAGAC
AATAACATTGTAAGCAATCAAACAACCTTAAAATTCTTTCTCTAGTTTGT
CATGGGGATTCCGGCAGTCCGTTTGTTTGCCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003027XLOC_003027Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005319-exon-sc0000052-1575043694:107823..107947TCONS_00005319-exon-sc0000052-1575043694:107823..107947Clytia hemisphaericaexon
TCONS_00005319-exon-sc0000052-1575043694:106021..106489TCONS_00005319-exon-sc0000052-1575043694:106021..106489Clytia hemisphaericaexon
TCONS_00005319-exon-sc0000052-1575043694:105003..105064TCONS_00005319-exon-sc0000052-1575043694:105003..105064Clytia hemisphaericaexon
TCONS_00005319-exon-sc0000052-1575043694:97015..97059TCONS_00005319-exon-sc0000052-1575043694:97015..97059Clytia hemisphaericaexon
TCONS_00005319-exon-sc0000052-1575043694:96546..96755TCONS_00005319-exon-sc0000052-1575043694:96546..96755Clytia hemisphaericaexon
TCONS_00005319-exon-sc0000052-1575043694:94946..95110TCONS_00005319-exon-sc0000052-1575043694:94946..95110Clytia hemisphaericaexon
TCONS_00005319-exon-sc0000052-1575043694:92114..92152TCONS_00005319-exon-sc0000052-1575043694:92114..92152Clytia hemisphaericaexon
TCONS_00005319-exon-sc0000052-1510915933:107823..107947TCONS_00005319-exon-sc0000052-1510915933:107823..107947Clytia hemisphaericaexon
TCONS_00005319-exon-sc0000052-1510915933:106021..106489TCONS_00005319-exon-sc0000052-1510915933:106021..106489Clytia hemisphaericaexon
TCONS_00005319-exon-sc0000052-1510915933:105003..105064TCONS_00005319-exon-sc0000052-1510915933:105003..105064Clytia hemisphaericaexon
TCONS_00005319-exon-sc0000052-1510915933:97015..97059TCONS_00005319-exon-sc0000052-1510915933:97015..97059Clytia hemisphaericaexon
TCONS_00005319-exon-sc0000052-1510915933:96546..96755TCONS_00005319-exon-sc0000052-1510915933:96546..96755Clytia hemisphaericaexon
TCONS_00005319-exon-sc0000052-1510915933:94946..95110TCONS_00005319-exon-sc0000052-1510915933:94946..95110Clytia hemisphaericaexon
TCONS_00005319-exon-sc0000052-1510915933:92114..92152TCONS_00005319-exon-sc0000052-1510915933:92114..92152Clytia hemisphaericaexon
TCONS_00005319-exon-sc0000052-1491911889:107823..107947TCONS_00005319-exon-sc0000052-1491911889:107823..107947Clytia hemisphaericaexon
TCONS_00005319-exon-sc0000052-1491911889:106021..106489TCONS_00005319-exon-sc0000052-1491911889:106021..106489Clytia hemisphaericaexon
TCONS_00005319-exon-sc0000052-1491911889:105003..105064TCONS_00005319-exon-sc0000052-1491911889:105003..105064Clytia hemisphaericaexon
TCONS_00005319-exon-sc0000052-1491911889:97015..97059TCONS_00005319-exon-sc0000052-1491911889:97015..97059Clytia hemisphaericaexon
TCONS_00005319-exon-sc0000052-1491911889:96546..96755TCONS_00005319-exon-sc0000052-1491911889:96546..96755Clytia hemisphaericaexon
TCONS_00005319-exon-sc0000052-1491911889:94946..95110TCONS_00005319-exon-sc0000052-1491911889:94946..95110Clytia hemisphaericaexon
TCONS_00005319-exon-sc0000052-1491911889:92114..92152TCONS_00005319-exon-sc0000052-1491911889:92114..92152Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000052supercontigsc0000052:92114..107947 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.00543118	0.0276759	0	0	0	0	0	0	0	0	4.01191	4.0533	0.489577	1.67383	0.179086	0.25831	9.82512	9.82572	2.01962	1.99935	2.57034	3.65627	4.56504	6.05709	0	0	0.839119	1.50753
Blast
[Close]
BLAST of TCONS_00005319 vs. Swiss-Prot (Human)
Match: OVCH1 (Ovochymase-1 OS=Homo sapiens GN=OVCH1 PE=2 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 1.077e-35
Identity = 76/199 (38.19%), Postives = 112/199 (56.28%), Query Frame = 2 
Query:  533 RIIGGKDTKPHSWPWQVGIYRNGKYACGGTLIDSRWIVTAAHCVYRR--PVRIFTAKLGDHNRDIVEG-EQSIQVSNYIVNENYQNTRLNNDLALVQLEKPVIFGRTVQPIYLPEQGERTDVGKKCYVTGWGKTSNPGMVNNILQQLAMTVQNKTRCSTMNSKYAP--LTGQMLCAANTEVVENQSVCHGDSGSPFVCQ 1114
            RI GG++  PH WPWQVG+   G Y CGG +I+  WI+TAAHCV  +  P+  +T   GDH+R++ E  EQ  +  + IV+E++     ++D+AL+QL  P+ +   V+P+ LP   E     + C VTGWG  S  G + + LQQ+ + V  +  C        P  +T +M+CA      E +  C GDSG P VC+
Sbjct:  574 RIAGGEEACPHCWPWQVGLRFLGDYQCGGAIINPVWILTAAHCVQLKNNPLS-WTIIAGDHDRNLKESTEQVRRAKHIIVHEDFNTLSYDSDIALIQLSSPLEYNSVVRPVCLPHSAEPLFSSEICAVTGWGSISADGGLASRLQQIQVHVLEREVCEHTYYSAHPGGITEKMICAGFAASGE-KDFCQGDSGGPLVCR 770

HSP 2 Score: 108.997 bits (271), Expect = 1.726e-25
Identity = 69/205 (33.66%), Postives = 111/205 (54.15%), Query Frame = 2 
Query:  530 SRIIGGKDTKPHSWPWQVGIYRNGKYACGGTLIDSRWIVTAAHCV---YRRPVRIFTAKLGDHN---RDIVEGEQSIQVSNYIVNENYQNTR--LNNDLALVQLEKPVIFGRTVQPIYLPEQGERTDVGKKCYVTGWGKTSNPGMVNNILQQLAMTVQNKTRCSTM--NSKYAPLTGQMLCAANTEVVENQSVCHGDSGSPFVCQ 1114
            SRI   +++     PWQV +  +  + CGG+LI    +VTAAHC+     + ++  T   G+++   +D  + EQ+I VS  I +  Y N+R  ++ D+AL+ L+  V FG  VQPI LP+  ++ + G  C  +GWGK S     +N+LQ++ + + +   C+T+  +    PL   MLCA   +       C GDSG P VC+
Sbjct:   45 SRISSWRNSTVTGHPWQVSLKSDEHHFCGGSLIQEDRVVTAAHCLDSLSEKQLKNITVTSGEYSLFQKD--KQEQNIPVSKIITHPEY-NSREYMSPDIALLYLKHKVKFGNAVQPICLPDSDDKVEPGILCLSSGWGKISKTSEYSNVLQEMELPIMDDRACNTVLKSMNLPPLGRTMLCAGFPD--WGMDACQGDSGGPLVCR 244
The following BLAST results are available for this feature:
BLAST of TCONS_00005319 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
OVCH11.077e-3538.19Ovochymase-1 OS=Homo sapiens GN=OVCH1 PE=2 SV=2[more]
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