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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005309 ID=TCONS_00005309|Name=TCONS_00005309|organism=Clytia hemisphaerica|type=transcript|length=1150bp
tagtaccgacccccccccctgataataCATGTATTTCTTCCTTGTTCCTT
CTTTTTTGCGTCTTTCAGTTTTGACACAAAGTATATCGTTTTGTAATTTT
GTCTAATACAGTTATCCATTAAAGACTACAGAAACCGTCGGAAAGTCACA
TCAACCGCCGCCACCAGTACACCGCCTTCAACCACCCCTAACACATCTTC
TTACACCCTTGCCGCCACCACGTCACCTTCTTCAATATCTTCAATATCTT
CGATATCTCCTGGTCAGAAAATTCACCAAGCCGCAGACGCCCTTTTAACG
CCAAATACGTTGTCACTAAGAGACCATCAAACGTCAGGTTACCACCCTTC
AGGGAACATAACGGGTGGCAACACCATTACGAACAATGTTAGTAGTAACA
TTACAACAAACTCTCTTGAGGAGATTAAAAAACGGACTTACCTCGGGCAA
AATGATTCAGTGCCCGTTGATAGAAAATCTAATAGTGATCCGCGACTTGA
ACAACACCCTCTAAAGGTGACATCGCTAGATGGAAAGACCTTACCTAATC
ATACAGTAACCCGGAAAGATGTTTCTTCACCGTCAGCGGCCGCGCCTCGA
CGTCCATCGAACGAGCGGACGGTTCAACTGCAACAACAAGCGATGTTCGA
ACCGGTCAGTCCACTAAGCGATGAAACATTAAACAGTCCTAAAGAAGAGC
CTTCAGGGAATTCGATACATTCAGATATCACGAAAAATCCTTTCAGCATT
CACAACAGTATAACGAAACACCCATTTGTAAAGAAACAGCAGCAGCCAAC
AAAACCACCCGCCCAAGACCACAACATGTTACACGAGAATAATGTTTCTA
CGGCAACCGAGAATGATGAAGATACTTCATCTAACCATTCAAGCATCTCT
TCAACATCGTTCGGTTCCGGTGATGTCGTTCACGATAGGTCGAGTTATTC
GAGCTACCAACGCATCACTTCGAGTGCATCCACCAACAACTCGAGCCGTG
ACACTTATACTGTCGGTCGTGATTTCTACGGGGTAAGTTTCTGAGACTTG
CTTGTTTGAACTATAAGATATAGCTCTGCATTAAGTGACGTCCTAAACAT
TGTTGAATTTGCGAAGCTCCTGCTACTATTGATAGACGCAGCTCTGTTTA Run BLAST on NCBI transcript from alignment at sc0000052:639781..645090+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005309 ID=TCONS_00005309|Name=TCONS_00005309|organism=Clytia hemisphaerica|type=transcript|length=5310bp|location=Sequence derived from alignment at sc0000052:639781..645090+ (Clytia hemisphaerica)
tagtaccgacccccccccctgataataCATGTATTTCTTCCTTGTTCCTT
CTTTTTTGCGTCTTTCAGTTTTGACACAAAGTATATCGTTTTGTAATTTT
GTCTAATACAGTTATCCATTAAAGACTACAGAAACCGTCGGAAAGTCACA
TCAACCGCCGCCACCAGTACACCGCCTTCAACCACCCCTAACACATCTTC
TTACACCCTTGCCGCCACCACGTCACCTTCTTCAATATCTTCAATATCTT
CGATATCTCCTGGTCAGAAAATTCACCAAGCCGCAGACGCCCTTTTAACG
CCAAATACGTTGTCACTAAGAGACCATCAAACGTCAGGTTACCACCCTTC
AGGGAACATAACGGGTGGCAACACCATTACGAACAATGTTAGTAGTAACA
TTACAACAAACTCTCTTGAGGAGATTAAAAAACGGACTTACCTCGGGCAA
AATGATTCAGTGCCCGTTGATAGAAAATCTAATAGTGATCCGCGACTTGA
ACAACACCCTCTAAAGGTGACATCGCTAGATGGAAAGACCTTACCTAATC
ATACAGTAACCCGGAAAGATGTTTCTTCACCGTCAGCGGCCGCGCCTCGA
CGTCCATCGAACGAGCGGACGGTTCAACTGCAACAACAAGCGATGTTCGA
ACCGGTCAGTCCACTAAGCGATGAAACATTAAACAGTCCTAAAGAAGAGC
CTTCAGGTATTGTGAATCTCTTatgaaatgaaataattttgaactTAAAT
AATTTCACCATCGTTAGagaaaaaatggcatttcaatAAATGAACGTCAA
ACAGGGAAACAAATggatatctatatattaatagcggtgctttgtgtgtc
tgtgtgtcaccactttcgttttcgctttgtttgtgttttaaaattatgac
ttttagtctcttgctcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNc
aacatccaaaggacttttagtgcgttcagctacagcttaaccggcgtgcg
aagccgggtaccggctagtttttCATACACAGGATAGGTGATGCTTTTAA
TTTTGCTAATTCTCTATGGATATCTGTTAGACGtccaaattttttggaaa
atactaGAAGACATTGAACCTGGAGTTTTTGTCGAGCAAACAAACACAAA
CAAATACTCCATGTAGTTCGAATTCGTGGTGTCCCTCGAGGGCCGAATGA
CAGGGAGTCAGCTGCACGAGTAGAGactttttttcagtgatttttttaag
gatgtttttttttttttttttgtaaaagtgtACGAGATTTGTGAGTTGAT
TTACCTTGCGCTTTGTAATGTACAGCGACATTGAGGGATATAACCTCATC
TTTCTACTATTACAGGGAATTCGATACATTCAGATATCACGAAAAATCCT
TTCAGCATTCACAACAGTATAACGAAACACCCATTTGTAAAGAAACAGCA
GCAGCCAACAAAACCACCCGCCCAAGGTATCCTGATTGAATATTCTTGGT
ATTATGATTACACTCGTGCGTAGAACGAAATTCTACGTCATATCCCTGGC
TCCGTTGCCCAAAAAGTTACAAAAGTTCAACATTTAAAGGGAATATTTTC
ACTTCTTTTGTAACATTTGGATTTTCCCCGATgaagctcgaagggctaga
aaAGAATCTTCGATCTTTCCCAAACAAGAAAATagactttctttgtttta
tgcGATACACTTTTCGGAATATTGCGATAGGTTCTACTTTCAATTCAACG
TTTGTATGAAAGCCACGTTGGTCCATTTTGGATAGGAAAGAAGCTAAGCT
TTCGCTCTAGCCCTTCAAGCTTTAAACTACATGACATATGGCGCAGACAC
CAAATTATCTGTGCAACGGTTTAATTTGCAGATCAACAACCTTTTGTTAT
TTCGAATTAGACGTCGATATCCCGTAGTCCATATGTAAAATAAACTAACA
GCAGGATTTTCCGGTTTCTCTGCAGAATGCCTATGTATCATTTTGTTTAT
TAAGTTTTAATGAATATTTATGTGCAATAACTTCACTGTCTATTTGTCTG
TTTGTCTGCACTGTTTCATCCGTAGCACGTATACATGTAACATACTAATT
AAATGCACTTCTCCCCAGTTGCTTCGGGTTCCCAGGCGAGCAGTTTAGAA
TTCATTCAGTAAACAGTTTGATCTATTTTCTATCTAGATACCCTGCGTTA
ACTCACACTTCATAAGCACCACCAATAAGCACCTTTAATAACCTTCTTTC
CTTTTCCCACCCAATCTTTCTTTTATCCGCCCTTAGGTCTACTCCAGCTT
TTGTCGGCCCAAAAATATCCACACCTTGCCACCCTAACGAACCATTCAAA
CAGCACTATCCCGAACACTAGCCTCACTCCGCCACCTGCTCATGTGAACG
CCAGCACAGAATACAGGCTAACACCACCTCCTCCTTCTTCTGCAAACCCT
GCGCACCAACACCTTATTAATAACGAATGTAAGTTTTTGTgtgtttgttt
atttgttttgttttgtttgtcttATTTGTTCTGTTGTTTATTTAACACAC
CTGCTCAGATTTTCCGGAATGACAAAAGTTGCTCAGAAGCAAAATAAAgc
aattctattggttacaGACGAAGTTCGTCTTGAAATAAACCAATTAGATG
CTTGCTAGTAAGGGGACAACCCTTAGGATATGTGACAACAATTTTTGGAG
TGGAATTTTCTTTGCTCATTCGAAAGAAGAATCTTGCGTGATCCAGTGAC
GCCAATCGTactaaaacggacaaaaattttttgctttaaatggtCGTTAT
TATTTGTATGTATGAGAAAGGGATACTTTTATTGCCCAGAATTCTATGCT
TTAACCGATGAAGTCGATCATTCATGTTGAATTTGATTTCAGCCATGTTT
TTCCCTTAAAGTTTTGCCTGTAACGTCAGCCTTTAGGCTATAAAAGATTT
GCCGGACCTACTTCACGTAACCCCTCTCAAGGAGTCTTtttaaaaatcca
ttttttctttcaaataggccaaaaattccacttcaaaatttgttttgacg
GGTCCTGAGGATTGGTTCCCTTACTGTACATTTTGTTTCTGATTATTATG
Cactattgttaaccggttactttttcgaagcgggctacatggctttttgc
gcaatgcaattggttcttttcgcattacgacgggcctacattgtccagag
ttgcccgtcgttaggaaaattcattgtgacgtcacttcttcaaaggaaaa
tgaacaatgcgttgacatcatttctatcattttttatttctgacgtcaga
atttatagcaattttttatctcttttcgcttgttttttctactttatttc
gctatttttcctggataaagcgctaaaaatcaatcaaagttgaaggaaac
ggttaacaaatacaataatgaccggtttttttcgggctgtacNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNtttttttcgggctgtactgaaaata
ttgccctcggtcaacacaacaacctcgcaagctcggtcgttacttgacct
cgggcaatatttctcagtacagccctcactaaccggttaTTATTGTATTA
TAGTCAACGCACTCTGATTCGATTTTCCAcgagaatttgatttttttatc
gaGTACGGAAGTATGAGTAGGAGTAGTAGGAGTCTGATAACAACATCGAA
TAATTGAGTCCGGGAAGAAAAATATGTGCAAGACTCAATATTCGACTACA
GAAATTTTAATACGAAAAACAGCGAATTTCGAAGATTTTGCCGAAACCCA
AGTTCTTTAAGAAACATTTCTGGTATTTTCACATCTAAAGAATTAGATAT
AATGTTTTTGACCCAATTTCCATTCAGACCACAACATGTTACACGAGAAT
AATGTTTCTACGGCAACCGAGAATGATGAAGATACTTCATCTAACCATTC
AAGCATCTCTTCAACATCGTTCGGTTCCGGTGATGTCGTTCACGATAGGT
CGAGTTATTCGAGCTACCAACGCATCACTTCGAGTGCATCCACCAACAAC
TCGAGCCGTGACACTTATACTGTCGGTCGTGATTTCTACGGGGTAAGTTT
CTGAGACTTGCTTGTTTGAACTATAAGATATAGCTCTGCATTAAGTGACG
TCCTAAACATTGTTGAATTTGCGAAGCTCCTGCTACTATTGATAGACGCA
GCTCTGTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005309-exon-sc0000052-1491911889:639781..640486 | TCONS_00005309-exon-sc0000052-1491911889:639781..640486 | Clytia hemisphaerica | exon |
| TCONS_00005309-exon-sc0000052-1510915933:639781..640486 | TCONS_00005309-exon-sc0000052-1510915933:639781..640486 | Clytia hemisphaerica | exon |
| TCONS_00005309-exon-sc0000052-1575043694:639781..640486 | TCONS_00005309-exon-sc0000052-1575043694:639781..640486 | Clytia hemisphaerica | exon |
| TCONS_00005309-exon-sc0000052-1491911889:642196..642306 | TCONS_00005309-exon-sc0000052-1491911889:642196..642306 | Clytia hemisphaerica | exon |
| TCONS_00005309-exon-sc0000052-1510915933:642196..642306 | TCONS_00005309-exon-sc0000052-1510915933:642196..642306 | Clytia hemisphaerica | exon |
| TCONS_00005309-exon-sc0000052-1575043694:642196..642306 | TCONS_00005309-exon-sc0000052-1575043694:642196..642306 | Clytia hemisphaerica | exon |
| TCONS_00005309-exon-sc0000052-1491911889:644758..645090 | TCONS_00005309-exon-sc0000052-1491911889:644758..645090 | Clytia hemisphaerica | exon |
| TCONS_00005309-exon-sc0000052-1510915933:644758..645090 | TCONS_00005309-exon-sc0000052-1510915933:644758..645090 | Clytia hemisphaerica | exon |
| TCONS_00005309-exon-sc0000052-1575043694:644758..645090 | TCONS_00005309-exon-sc0000052-1575043694:644758..645090 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000052 | supercontig | sc0000052:639781..645090 + |
Blast
The following BLAST results are available for this feature:
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