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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005308 ID=TCONS_00005308|Name=TCONS_00005308|organism=Clytia hemisphaerica|type=transcript|length=1379bp ACCACTACACCACTAaaagtcatgatgtctgaaactttagtaccgacccc cccccctgataataCATGTATTTCTTCCTTGTTCCTTCTTTTTTGCGTCT TTCAGTTTTGACACAAAGTATATCGTTTTGTAATTTTGTCTAATACAGTT ATCCATTAAAGACTACAGAAACCGTCGGAAAGTCACATCAACCGCCGCCA CCAGTACACCGCCTTCAACCACCCCTAACACATCTTCTTACACCCTTGCC GCCACCACGTCACCTTCTTCAATATCTTCAATATCTTCGATATCTCCTGG TCAGAAAATTCACCAAGCCGCAGACGCCCTTTTAACGCCAAATACGTTGT CACTAAGAGACCATCAAACGTCAGGTTACCACCCTTCAGGGAACATAACG GGTGGCAACACCATTACGAACAATGTTAGTAGTAACATTACAACAAACTC TCTTGAGGAGATTAAAAAACGGACTTACCTCGGGCAAAATGATTCAGTGC CCGTTGATAGAAAATCTAATAGTGATCCGCGACTTGAACAACACCCTCTA AAGGTGACATCGCTAGATGGAAAGACCTTACCTAATCATACAGTAACCCG GAAAGATGTTTCTTCACCGTCAGCGGCCGCGCCTCGACGTCCATCGAACG AGCGGACGGTTCAACTGCAACAACAAGCGATGTTCGAACCGGTCAGTCCA CTAAGCGATGAAACATTAAACAGTCCTAAAGAAGAGCCTTCAGGGAATTC GATACATTCAGATATCACGAAAAATCCTTTCAGCATTCACAACAGTATAA CGAAACACCCATTTGTAAAGAAACAGCAGCAGCCAACAAAACCACCCGCC CAAGGTCTACTCCAGCTTTTGTCGGCCCAAAAATATCCACACCTTGCCAC CCTAACGAACCATTCAAACAGCACTATCCCGAACACTAGCCTCACTCCGC CACCTGCTCATGTGAACGCCAGCACAGAATACAGGCTAACACCACCTCCT CCTTCTTCTGCAAACCCTGCGCACCAACACCTTATTAATAACGAATACCA CAACATGTTACACGAGAATAATGTTTCTACGGCAACCGAGAATGATGAAG ATACTTCATCTAACCATTCAAGCATCTCTTCAACATCGTTCGGTTCCGGT GATGTCGTTCACGATAGGTCGAGTTATTCGAGCTACCAACGCATCACTTC GAGTGCATCCACCAACAACTCGAGCCGTGACACTTATACTGTCGGTCGTG ATTTCTACGGGGTAAGTTTCTGAGACTTGCTTGTTTGAACTATAAGATAT AGCTCTGCATTAAGTGACGTCCTAAACATTGTTGAATTTGCGAAGCTCCT GCTACTATTGATAGACGCAGCTCTGTTTA Run BLAST on NCBI protein sequence of TCONS_00005308-protein >TCONS_00005308-protein ID=TCONS_00005308-protein|Name=TCONS_00005308-protein|organism=Clytia hemisphaerica|type=polypeptide|length=197bp
MFEPVSPLSDETLNSPKEEPSGNSIHSDITKNPFSIHNSITKHPFVKKQQ QPTKPPAQGLLQLLSAQKYPHLATLTNHSNSTIPNTSLTPPPAHVNASTE YRLTPPPPSSANPAHQHLINNEYHNMLHENNVSTATENDEDTSSNHSSIS STSFGSGDVVHDRSSYSSYQRITSSASTNNSSRDTYTVGRDFYGVSF Run BLAST on NCBI transcript from alignment at sc0000052:639744..645090+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005308 ID=TCONS_00005308|Name=TCONS_00005308|organism=Clytia hemisphaerica|type=transcript|length=5347bp|location=Sequence derived from alignment at sc0000052:639744..645090+ (Clytia hemisphaerica) ACCACTACACCACTAaaagtcatgatgtctgaaactttagtaccgacccc
cccccctgataataCATGTATTTCTTCCTTGTTCCTTCTTTTTTGCGTCT
TTCAGTTTTGACACAAAGTATATCGTTTTGTAATTTTGTCTAATACAGTT
ATCCATTAAAGACTACAGAAACCGTCGGAAAGTCACATCAACCGCCGCCA
CCAGTACACCGCCTTCAACCACCCCTAACACATCTTCTTACACCCTTGCC
GCCACCACGTCACCTTCTTCAATATCTTCAATATCTTCGATATCTCCTGG
TCAGAAAATTCACCAAGCCGCAGACGCCCTTTTAACGCCAAATACGTTGT
CACTAAGAGACCATCAAACGTCAGGTTACCACCCTTCAGGGAACATAACG
GGTGGCAACACCATTACGAACAATGTTAGTAGTAACATTACAACAAACTC
TCTTGAGGAGATTAAAAAACGGACTTACCTCGGGCAAAATGATTCAGTGC
CCGTTGATAGAAAATCTAATAGTGATCCGCGACTTGAACAACACCCTCTA
AAGGTGACATCGCTAGATGGAAAGACCTTACCTAATCATACAGTAACCCG
GAAAGATGTTTCTTCACCGTCAGCGGCCGCGCCTCGACGTCCATCGAACG
AGCGGACGGTTCAACTGCAACAACAAGCGATGTTCGAACCGGTCAGTCCA
CTAAGCGATGAAACATTAAACAGTCCTAAAGAAGAGCCTTCAGGTATTGT
GAATCTCTTatgaaatgaaataattttgaactTAAATAATTTCACCATCG
TTAGagaaaaaatggcatttcaatAAATGAACGTCAAACAGGGAAACAAA
Tggatatctatatattaatagcggtgctttgtgtgtctgtgtgtcaccac
tttcgttttcgctttgtttgtgttttaaaattatgacttttagtctcttg
ctcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcaacatccaaagga
cttttagtgcgttcagctacagcttaaccggcgtgcgaagccgggtaccg
gctagtttttCATACACAGGATAGGTGATGCTTTTAATTTTGCTAATTCT
CTATGGATATCTGTTAGACGtccaaattttttggaaaatactaGAAGACA
TTGAACCTGGAGTTTTTGTCGAGCAAACAAACACAAACAAATACTCCATG
TAGTTCGAATTCGTGGTGTCCCTCGAGGGCCGAATGACAGGGAGTCAGCT
GCACGAGTAGAGactttttttcagtgatttttttaaggatgttttttttt
ttttttttgtaaaagtgtACGAGATTTGTGAGTTGATTTACCTTGCGCTT
TGTAATGTACAGCGACATTGAGGGATATAACCTCATCTTTCTACTATTAC
AGGGAATTCGATACATTCAGATATCACGAAAAATCCTTTCAGCATTCACA
ACAGTATAACGAAACACCCATTTGTAAAGAAACAGCAGCAGCCAACAAAA
CCACCCGCCCAAGGTATCCTGATTGAATATTCTTGGTATTATGATTACAC
TCGTGCGTAGAACGAAATTCTACGTCATATCCCTGGCTCCGTTGCCCAAA
AAGTTACAAAAGTTCAACATTTAAAGGGAATATTTTCACTTCTTTTGTAA
CATTTGGATTTTCCCCGATgaagctcgaagggctagaaaAGAATCTTCGA
TCTTTCCCAAACAAGAAAATagactttctttgttttatgcGATACACTTT
TCGGAATATTGCGATAGGTTCTACTTTCAATTCAACGTTTGTATGAAAGC
CACGTTGGTCCATTTTGGATAGGAAAGAAGCTAAGCTTTCGCTCTAGCCC
TTCAAGCTTTAAACTACATGACATATGGCGCAGACACCAAATTATCTGTG
CAACGGTTTAATTTGCAGATCAACAACCTTTTGTTATTTCGAATTAGACG
TCGATATCCCGTAGTCCATATGTAAAATAAACTAACAGCAGGATTTTCCG
GTTTCTCTGCAGAATGCCTATGTATCATTTTGTTTATTAAGTTTTAATGA
ATATTTATGTGCAATAACTTCACTGTCTATTTGTCTGTTTGTCTGCACTG
TTTCATCCGTAGCACGTATACATGTAACATACTAATTAAATGCACTTCTC
CCCAGTTGCTTCGGGTTCCCAGGCGAGCAGTTTAGAATTCATTCAGTAAA
CAGTTTGATCTATTTTCTATCTAGATACCCTGCGTTAACTCACACTTCAT
AAGCACCACCAATAAGCACCTTTAATAACCTTCTTTCCTTTTCCCACCCA
ATCTTTCTTTTATCCGCCCTTAGGTCTACTCCAGCTTTTGTCGGCCCAAA
AATATCCACACCTTGCCACCCTAACGAACCATTCAAACAGCACTATCCCG
AACACTAGCCTCACTCCGCCACCTGCTCATGTGAACGCCAGCACAGAATA
CAGGCTAACACCACCTCCTCCTTCTTCTGCAAACCCTGCGCACCAACACC
TTATTAATAACGAATGTAAGTTTTTGTgtgtttgtttatttgttttgttt
tgtttgtcttATTTGTTCTGTTGTTTATTTAACACACCTGCTCAGATTTT
CCGGAATGACAAAAGTTGCTCAGAAGCAAAATAAAgcaattctattggtt
acaGACGAAGTTCGTCTTGAAATAAACCAATTAGATGCTTGCTAGTAAGG
GGACAACCCTTAGGATATGTGACAACAATTTTTGGAGTGGAATTTTCTTT
GCTCATTCGAAAGAAGAATCTTGCGTGATCCAGTGACGCCAATCGTacta
aaacggacaaaaattttttgctttaaatggtCGTTATTATTTGTATGTAT
GAGAAAGGGATACTTTTATTGCCCAGAATTCTATGCTTTAACCGATGAAG
TCGATCATTCATGTTGAATTTGATTTCAGCCATGTTTTTCCCTTAAAGTT
TTGCCTGTAACGTCAGCCTTTAGGCTATAAAAGATTTGCCGGACCTACTT
CACGTAACCCCTCTCAAGGAGTCTTtttaaaaatccattttttctttcaa
ataggccaaaaattccacttcaaaatttgttttgacgGGTCCTGAGGATT
GGTTCCCTTACTGTACATTTTGTTTCTGATTATTATGCactattgttaac
cggttactttttcgaagcgggctacatggctttttgcgcaatgcaattgg
ttcttttcgcattacgacgggcctacattgtccagagttgcccgtcgtta
ggaaaattcattgtgacgtcacttcttcaaaggaaaatgaacaatgcgtt
gacatcatttctatcattttttatttctgacgtcagaatttatagcaatt
ttttatctcttttcgcttgttttttctactttatttcgctatttttcctg
gataaagcgctaaaaatcaatcaaagttgaaggaaacggttaacaaatac
aataatgaccggtttttttcgggctgtacNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNtttttttcgggctgtactgaaaatattgccctcggtca
acacaacaacctcgcaagctcggtcgttacttgacctcgggcaatatttc
tcagtacagccctcactaaccggttaTTATTGTATTATAGTCAACGCACT
CTGATTCGATTTTCCAcgagaatttgatttttttatcgaGTACGGAAGTA
TGAGTAGGAGTAGTAGGAGTCTGATAACAACATCGAATAATTGAGTCCGG
GAAGAAAAATATGTGCAAGACTCAATATTCGACTACAGAAATTTTAATAC
GAAAAACAGCGAATTTCGAAGATTTTGCCGAAACCCAAGTTCTTTAAGAA
ACATTTCTGGTATTTTCACATCTAAAGAATTAGATATAATGTTTTTGACC
CAATTTCCATTCAGACCACAACATGTTACACGAGAATAATGTTTCTACGG
CAACCGAGAATGATGAAGATACTTCATCTAACCATTCAAGCATCTCTTCA
ACATCGTTCGGTTCCGGTGATGTCGTTCACGATAGGTCGAGTTATTCGAG
CTACCAACGCATCACTTCGAGTGCATCCACCAACAACTCGAGCCGTGACA
CTTATACTGTCGGTCGTGATTTCTACGGGGTAAGTTTCTGAGACTTGCTT
GTTTGAACTATAAGATATAGCTCTGCATTAAGTGACGTCCTAAACATTGT
TGAATTTGCGAAGCTCCTGCTACTATTGATAGACGCAGCTCTGTTTA Coding sequence (CDS) from alignment at sc0000052:639744..645090+ >TCONS_00005308 ID=TCONS_00005308|Name=TCONS_00005308|organism=Clytia hemisphaerica|type=CDS|length=2376bp|location=Sequence derived from alignment at sc0000052:639744..645090+ (Clytia hemisphaerica) ATGTTCGAACCGGTCAGTCCACTAAGCGATGAAACATTAAACAGTCCTAA AGAAGAGCCTTCAGGGAATTCGATACATTCAGATATCACGAAAAATCCTT TCAGCATTCACAACAGTATAACGAAACACCCATTTGTAAAGAAACAGCAG CAGCCAACAAAACCACCCGCCCAAGGTCTACTCCAGCTTTTGTCGGCCCA AAAATATCCACACCTTGCCACCCTAACGAACCATTCAAACAGCACTATCC CGAACACTAGCCTCACTCCGCCACCTGCTCATGTGAACGCCAGCACAGAA TACAGGCTAACACCACCTCCTCCTTCTTCTGCAAACCCTGCGCACCAACA CCTTATTAATAACGAATACCACAACATGTTACACGAGAATAATGTTTCTA CGGCAACCGAGAATGATGAAGATACTTCATCTAACCATTCAAGCATCTCT TCAACATCGTTCGGTTCCGGTGATGTCGTTCACGATAGGTCGAGTTATTC GAGCTACCAACGCATCACTTCGAGTGCATCCACCAACAACTCGAGCCGTG ACACTTATACTGTCGGTCGTGATTTCTACGGGGTAAGTTTCTGAATGTTC GAACCGGTCAGTCCACTAAGCGATGAAACATTAAACAGTCCTAAAGAAGA GCCTTCAGGGAATTCGATACATTCAGATATCACGAAAAATCCTTTCAGCA TTCACAACAGTATAACGAAACACCCATTTGTAAAGAAACAGCAGCAGCCA ACAAAACCACCCGCCCAAGGTCTACTCCAGCTTTTGTCGGCCCAAAAATA TCCACACCTTGCCACCCTAACGAACCATTCAAACAGCACTATCCCGAACA CTAGCCTCACTCCGCCACCTGCTCATGTGAACGCCAGCACAGAATACAGG CTAACACCACCTCCTCCTTCTTCTGCAAACCCTGCGCACCAACACCTTAT TAATAACGAATACCACAACATGTTACACGAGAATAATGTTTCTACGGCAA CCGAGAATGATGAAGATACTTCATCTAACCATTCAAGCATCTCTTCAACA TCGTTCGGTTCCGGTGATGTCGTTCACGATAGGTCGAGTTATTCGAGCTA CCAACGCATCACTTCGAGTGCATCCACCAACAACTCGAGCCGTGACACTT ATACTGTCGGTCGTGATTTCTACGGGGTAAGTTTCTGAATGTTCGAACCG GTCAGTCCACTAAGCGATGAAACATTAAACAGTCCTAAAGAAGAGCCTTC AGGGAATTCGATACATTCAGATATCACGAAAAATCCTTTCAGCATTCACA ACAGTATAACGAAACACCCATTTGTAAAGAAACAGCAGCAGCCAACAAAA CCACCCGCCCAAGGTCTACTCCAGCTTTTGTCGGCCCAAAAATATCCACA CCTTGCCACCCTAACGAACCATTCAAACAGCACTATCCCGAACACTAGCC TCACTCCGCCACCTGCTCATGTGAACGCCAGCACAGAATACAGGCTAACA CCACCTCCTCCTTCTTCTGCAAACCCTGCGCACCAACACCTTATTAATAA CGAATACCACAACATGTTACACGAGAATAATGTTTCTACGGCAACCGAGA ATGATGAAGATACTTCATCTAACCATTCAAGCATCTCTTCAACATCGTTC GGTTCCGGTGATGTCGTTCACGATAGGTCGAGTTATTCGAGCTACCAACG CATCACTTCGAGTGCATCCACCAACAACTCGAGCCGTGACACTTATACTG TCGGTCGTGATTTCTACGGGGTAAGTTTCTGAATGTTCGAACCGGTCAGT CCACTAAGCGATGAAACATTAAACAGTCCTAAAGAAGAGCCTTCAGGGAA TTCGATACATTCAGATATCACGAAAAATCCTTTCAGCATTCACAACAGTA TAACGAAACACCCATTTGTAAAGAAACAGCAGCAGCCAACAAAACCACCC GCCCAAGGTCTACTCCAGCTTTTGTCGGCCCAAAAATATCCACACCTTGC CACCCTAACGAACCATTCAAACAGCACTATCCCGAACACTAGCCTCACTC CGCCACCTGCTCATGTGAACGCCAGCACAGAATACAGGCTAACACCACCT CCTCCTTCTTCTGCAAACCCTGCGCACCAACACCTTATTAATAACGAATA CCACAACATGTTACACGAGAATAATGTTTCTACGGCAACCGAGAATGATG AAGATACTTCATCTAACCATTCAAGCATCTCTTCAACATCGTTCGGTTCC GGTGATGTCGTTCACGATAGGTCGAGTTATTCGAGCTACCAACGCATCAC TTCGAGTGCATCCACCAACAACTCGAGCCGTGACACTTATACTGTCGGTC GTGATTTCTACGGGGTAAGTTTCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00005308-exon-sc0000052-1491911889:639744..640486 | TCONS_00005308-exon-sc0000052-1491911889:639744..640486 | Clytia hemisphaerica | exon |
TCONS_00005308-exon-sc0000052-1510915933:639744..640486 | TCONS_00005308-exon-sc0000052-1510915933:639744..640486 | Clytia hemisphaerica | exon |
TCONS_00005308-exon-sc0000052-1575043694:639744..640486 | TCONS_00005308-exon-sc0000052-1575043694:639744..640486 | Clytia hemisphaerica | exon |
TCONS_00005308-exon-sc0000052-1491911889:642196..642306 | TCONS_00005308-exon-sc0000052-1491911889:642196..642306 | Clytia hemisphaerica | exon |
TCONS_00005308-exon-sc0000052-1510915933:642196..642306 | TCONS_00005308-exon-sc0000052-1510915933:642196..642306 | Clytia hemisphaerica | exon |
TCONS_00005308-exon-sc0000052-1575043694:642196..642306 | TCONS_00005308-exon-sc0000052-1575043694:642196..642306 | Clytia hemisphaerica | exon |
TCONS_00005308-exon-sc0000052-1491911889:643117..643308 | TCONS_00005308-exon-sc0000052-1491911889:643117..643308 | Clytia hemisphaerica | exon |
TCONS_00005308-exon-sc0000052-1510915933:643117..643308 | TCONS_00005308-exon-sc0000052-1510915933:643117..643308 | Clytia hemisphaerica | exon |
TCONS_00005308-exon-sc0000052-1575043694:643117..643308 | TCONS_00005308-exon-sc0000052-1575043694:643117..643308 | Clytia hemisphaerica | exon |
TCONS_00005308-exon-sc0000052-1491911889:644758..645090 | TCONS_00005308-exon-sc0000052-1491911889:644758..645090 | Clytia hemisphaerica | exon |
TCONS_00005308-exon-sc0000052-1510915933:644758..645090 | TCONS_00005308-exon-sc0000052-1510915933:644758..645090 | Clytia hemisphaerica | exon |
TCONS_00005308-exon-sc0000052-1575043694:644758..645090 | TCONS_00005308-exon-sc0000052-1575043694:644758..645090 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000052 | supercontig | sc0000052:639744..645090 + |
Blast
The following BLAST results are available for this feature:
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