TCONS_00005308 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005308
Unique NameTCONS_00005308
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1379

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005308 ID=TCONS_00005308|Name=TCONS_00005308|organism=Clytia hemisphaerica|type=transcript|length=1379bp
ACCACTACACCACTAaaagtcatgatgtctgaaactttagtaccgacccc
cccccctgataataCATGTATTTCTTCCTTGTTCCTTCTTTTTTGCGTCT
TTCAGTTTTGACACAAAGTATATCGTTTTGTAATTTTGTCTAATACAGTT
ATCCATTAAAGACTACAGAAACCGTCGGAAAGTCACATCAACCGCCGCCA
CCAGTACACCGCCTTCAACCACCCCTAACACATCTTCTTACACCCTTGCC
GCCACCACGTCACCTTCTTCAATATCTTCAATATCTTCGATATCTCCTGG
TCAGAAAATTCACCAAGCCGCAGACGCCCTTTTAACGCCAAATACGTTGT
CACTAAGAGACCATCAAACGTCAGGTTACCACCCTTCAGGGAACATAACG
GGTGGCAACACCATTACGAACAATGTTAGTAGTAACATTACAACAAACTC
TCTTGAGGAGATTAAAAAACGGACTTACCTCGGGCAAAATGATTCAGTGC
CCGTTGATAGAAAATCTAATAGTGATCCGCGACTTGAACAACACCCTCTA
AAGGTGACATCGCTAGATGGAAAGACCTTACCTAATCATACAGTAACCCG
GAAAGATGTTTCTTCACCGTCAGCGGCCGCGCCTCGACGTCCATCGAACG
AGCGGACGGTTCAACTGCAACAACAAGCGATGTTCGAACCGGTCAGTCCA
CTAAGCGATGAAACATTAAACAGTCCTAAAGAAGAGCCTTCAGGGAATTC
GATACATTCAGATATCACGAAAAATCCTTTCAGCATTCACAACAGTATAA
CGAAACACCCATTTGTAAAGAAACAGCAGCAGCCAACAAAACCACCCGCC
CAAGGTCTACTCCAGCTTTTGTCGGCCCAAAAATATCCACACCTTGCCAC
CCTAACGAACCATTCAAACAGCACTATCCCGAACACTAGCCTCACTCCGC
CACCTGCTCATGTGAACGCCAGCACAGAATACAGGCTAACACCACCTCCT
CCTTCTTCTGCAAACCCTGCGCACCAACACCTTATTAATAACGAATACCA
CAACATGTTACACGAGAATAATGTTTCTACGGCAACCGAGAATGATGAAG
ATACTTCATCTAACCATTCAAGCATCTCTTCAACATCGTTCGGTTCCGGT
GATGTCGTTCACGATAGGTCGAGTTATTCGAGCTACCAACGCATCACTTC
GAGTGCATCCACCAACAACTCGAGCCGTGACACTTATACTGTCGGTCGTG
ATTTCTACGGGGTAAGTTTCTGAGACTTGCTTGTTTGAACTATAAGATAT
AGCTCTGCATTAAGTGACGTCCTAAACATTGTTGAATTTGCGAAGCTCCT
GCTACTATTGATAGACGCAGCTCTGTTTA
Run BLAST on NCBI

protein sequence of TCONS_00005308-protein

>TCONS_00005308-protein ID=TCONS_00005308-protein|Name=TCONS_00005308-protein|organism=Clytia hemisphaerica|type=polypeptide|length=197bp
MFEPVSPLSDETLNSPKEEPSGNSIHSDITKNPFSIHNSITKHPFVKKQQ
QPTKPPAQGLLQLLSAQKYPHLATLTNHSNSTIPNTSLTPPPAHVNASTE
YRLTPPPPSSANPAHQHLINNEYHNMLHENNVSTATENDEDTSSNHSSIS
STSFGSGDVVHDRSSYSSYQRITSSASTNNSSRDTYTVGRDFYGVSF
Run BLAST on NCBI

transcript from alignment at sc0000052:639744..645090+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005308 ID=TCONS_00005308|Name=TCONS_00005308|organism=Clytia hemisphaerica|type=transcript|length=5347bp|location=Sequence derived from alignment at sc0000052:639744..645090+ (Clytia hemisphaerica)
ACCACTACACCACTAaaagtcatgatgtctgaaactttagtaccgacccc cccccctgataataCATGTATTTCTTCCTTGTTCCTTCTTTTTTGCGTCT TTCAGTTTTGACACAAAGTATATCGTTTTGTAATTTTGTCTAATACAGTT ATCCATTAAAGACTACAGAAACCGTCGGAAAGTCACATCAACCGCCGCCA CCAGTACACCGCCTTCAACCACCCCTAACACATCTTCTTACACCCTTGCC GCCACCACGTCACCTTCTTCAATATCTTCAATATCTTCGATATCTCCTGG TCAGAAAATTCACCAAGCCGCAGACGCCCTTTTAACGCCAAATACGTTGT CACTAAGAGACCATCAAACGTCAGGTTACCACCCTTCAGGGAACATAACG GGTGGCAACACCATTACGAACAATGTTAGTAGTAACATTACAACAAACTC TCTTGAGGAGATTAAAAAACGGACTTACCTCGGGCAAAATGATTCAGTGC CCGTTGATAGAAAATCTAATAGTGATCCGCGACTTGAACAACACCCTCTA AAGGTGACATCGCTAGATGGAAAGACCTTACCTAATCATACAGTAACCCG GAAAGATGTTTCTTCACCGTCAGCGGCCGCGCCTCGACGTCCATCGAACG AGCGGACGGTTCAACTGCAACAACAAGCGATGTTCGAACCGGTCAGTCCA CTAAGCGATGAAACATTAAACAGTCCTAAAGAAGAGCCTTCAGGTATTGT GAATCTCTTatgaaatgaaataattttgaactTAAATAATTTCACCATCG TTAGagaaaaaatggcatttcaatAAATGAACGTCAAACAGGGAAACAAA Tggatatctatatattaatagcggtgctttgtgtgtctgtgtgtcaccac tttcgttttcgctttgtttgtgttttaaaattatgacttttagtctcttg ctcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcaacatccaaagga cttttagtgcgttcagctacagcttaaccggcgtgcgaagccgggtaccg gctagtttttCATACACAGGATAGGTGATGCTTTTAATTTTGCTAATTCT CTATGGATATCTGTTAGACGtccaaattttttggaaaatactaGAAGACA TTGAACCTGGAGTTTTTGTCGAGCAAACAAACACAAACAAATACTCCATG TAGTTCGAATTCGTGGTGTCCCTCGAGGGCCGAATGACAGGGAGTCAGCT GCACGAGTAGAGactttttttcagtgatttttttaaggatgttttttttt ttttttttgtaaaagtgtACGAGATTTGTGAGTTGATTTACCTTGCGCTT TGTAATGTACAGCGACATTGAGGGATATAACCTCATCTTTCTACTATTAC AGGGAATTCGATACATTCAGATATCACGAAAAATCCTTTCAGCATTCACA ACAGTATAACGAAACACCCATTTGTAAAGAAACAGCAGCAGCCAACAAAA CCACCCGCCCAAGGTATCCTGATTGAATATTCTTGGTATTATGATTACAC TCGTGCGTAGAACGAAATTCTACGTCATATCCCTGGCTCCGTTGCCCAAA AAGTTACAAAAGTTCAACATTTAAAGGGAATATTTTCACTTCTTTTGTAA CATTTGGATTTTCCCCGATgaagctcgaagggctagaaaAGAATCTTCGA TCTTTCCCAAACAAGAAAATagactttctttgttttatgcGATACACTTT TCGGAATATTGCGATAGGTTCTACTTTCAATTCAACGTTTGTATGAAAGC CACGTTGGTCCATTTTGGATAGGAAAGAAGCTAAGCTTTCGCTCTAGCCC TTCAAGCTTTAAACTACATGACATATGGCGCAGACACCAAATTATCTGTG CAACGGTTTAATTTGCAGATCAACAACCTTTTGTTATTTCGAATTAGACG TCGATATCCCGTAGTCCATATGTAAAATAAACTAACAGCAGGATTTTCCG GTTTCTCTGCAGAATGCCTATGTATCATTTTGTTTATTAAGTTTTAATGA ATATTTATGTGCAATAACTTCACTGTCTATTTGTCTGTTTGTCTGCACTG TTTCATCCGTAGCACGTATACATGTAACATACTAATTAAATGCACTTCTC CCCAGTTGCTTCGGGTTCCCAGGCGAGCAGTTTAGAATTCATTCAGTAAA CAGTTTGATCTATTTTCTATCTAGATACCCTGCGTTAACTCACACTTCAT AAGCACCACCAATAAGCACCTTTAATAACCTTCTTTCCTTTTCCCACCCA ATCTTTCTTTTATCCGCCCTTAGGTCTACTCCAGCTTTTGTCGGCCCAAA AATATCCACACCTTGCCACCCTAACGAACCATTCAAACAGCACTATCCCG AACACTAGCCTCACTCCGCCACCTGCTCATGTGAACGCCAGCACAGAATA CAGGCTAACACCACCTCCTCCTTCTTCTGCAAACCCTGCGCACCAACACC TTATTAATAACGAATGTAAGTTTTTGTgtgtttgtttatttgttttgttt tgtttgtcttATTTGTTCTGTTGTTTATTTAACACACCTGCTCAGATTTT CCGGAATGACAAAAGTTGCTCAGAAGCAAAATAAAgcaattctattggtt acaGACGAAGTTCGTCTTGAAATAAACCAATTAGATGCTTGCTAGTAAGG GGACAACCCTTAGGATATGTGACAACAATTTTTGGAGTGGAATTTTCTTT GCTCATTCGAAAGAAGAATCTTGCGTGATCCAGTGACGCCAATCGTacta aaacggacaaaaattttttgctttaaatggtCGTTATTATTTGTATGTAT GAGAAAGGGATACTTTTATTGCCCAGAATTCTATGCTTTAACCGATGAAG TCGATCATTCATGTTGAATTTGATTTCAGCCATGTTTTTCCCTTAAAGTT TTGCCTGTAACGTCAGCCTTTAGGCTATAAAAGATTTGCCGGACCTACTT CACGTAACCCCTCTCAAGGAGTCTTtttaaaaatccattttttctttcaa ataggccaaaaattccacttcaaaatttgttttgacgGGTCCTGAGGATT GGTTCCCTTACTGTACATTTTGTTTCTGATTATTATGCactattgttaac cggttactttttcgaagcgggctacatggctttttgcgcaatgcaattgg ttcttttcgcattacgacgggcctacattgtccagagttgcccgtcgtta ggaaaattcattgtgacgtcacttcttcaaaggaaaatgaacaatgcgtt gacatcatttctatcattttttatttctgacgtcagaatttatagcaatt ttttatctcttttcgcttgttttttctactttatttcgctatttttcctg gataaagcgctaaaaatcaatcaaagttgaaggaaacggttaacaaatac aataatgaccggtttttttcgggctgtacNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNtttttttcgggctgtactgaaaatattgccctcggtca acacaacaacctcgcaagctcggtcgttacttgacctcgggcaatatttc tcagtacagccctcactaaccggttaTTATTGTATTATAGTCAACGCACT CTGATTCGATTTTCCAcgagaatttgatttttttatcgaGTACGGAAGTA TGAGTAGGAGTAGTAGGAGTCTGATAACAACATCGAATAATTGAGTCCGG GAAGAAAAATATGTGCAAGACTCAATATTCGACTACAGAAATTTTAATAC GAAAAACAGCGAATTTCGAAGATTTTGCCGAAACCCAAGTTCTTTAAGAA ACATTTCTGGTATTTTCACATCTAAAGAATTAGATATAATGTTTTTGACC CAATTTCCATTCAGACCACAACATGTTACACGAGAATAATGTTTCTACGG CAACCGAGAATGATGAAGATACTTCATCTAACCATTCAAGCATCTCTTCA ACATCGTTCGGTTCCGGTGATGTCGTTCACGATAGGTCGAGTTATTCGAG CTACCAACGCATCACTTCGAGTGCATCCACCAACAACTCGAGCCGTGACA CTTATACTGTCGGTCGTGATTTCTACGGGGTAAGTTTCTGAGACTTGCTT GTTTGAACTATAAGATATAGCTCTGCATTAAGTGACGTCCTAAACATTGT TGAATTTGCGAAGCTCCTGCTACTATTGATAGACGCAGCTCTGTTTA

Coding sequence (CDS) from alignment at sc0000052:639744..645090+

>TCONS_00005308 ID=TCONS_00005308|Name=TCONS_00005308|organism=Clytia hemisphaerica|type=CDS|length=2376bp|location=Sequence derived from alignment at sc0000052:639744..645090+ (Clytia hemisphaerica)
ATGTTCGAACCGGTCAGTCCACTAAGCGATGAAACATTAAACAGTCCTAA
AGAAGAGCCTTCAGGGAATTCGATACATTCAGATATCACGAAAAATCCTT
TCAGCATTCACAACAGTATAACGAAACACCCATTTGTAAAGAAACAGCAG
CAGCCAACAAAACCACCCGCCCAAGGTCTACTCCAGCTTTTGTCGGCCCA
AAAATATCCACACCTTGCCACCCTAACGAACCATTCAAACAGCACTATCC
CGAACACTAGCCTCACTCCGCCACCTGCTCATGTGAACGCCAGCACAGAA
TACAGGCTAACACCACCTCCTCCTTCTTCTGCAAACCCTGCGCACCAACA
CCTTATTAATAACGAATACCACAACATGTTACACGAGAATAATGTTTCTA
CGGCAACCGAGAATGATGAAGATACTTCATCTAACCATTCAAGCATCTCT
TCAACATCGTTCGGTTCCGGTGATGTCGTTCACGATAGGTCGAGTTATTC
GAGCTACCAACGCATCACTTCGAGTGCATCCACCAACAACTCGAGCCGTG
ACACTTATACTGTCGGTCGTGATTTCTACGGGGTAAGTTTCTGAATGTTC
GAACCGGTCAGTCCACTAAGCGATGAAACATTAAACAGTCCTAAAGAAGA
GCCTTCAGGGAATTCGATACATTCAGATATCACGAAAAATCCTTTCAGCA
TTCACAACAGTATAACGAAACACCCATTTGTAAAGAAACAGCAGCAGCCA
ACAAAACCACCCGCCCAAGGTCTACTCCAGCTTTTGTCGGCCCAAAAATA
TCCACACCTTGCCACCCTAACGAACCATTCAAACAGCACTATCCCGAACA
CTAGCCTCACTCCGCCACCTGCTCATGTGAACGCCAGCACAGAATACAGG
CTAACACCACCTCCTCCTTCTTCTGCAAACCCTGCGCACCAACACCTTAT
TAATAACGAATACCACAACATGTTACACGAGAATAATGTTTCTACGGCAA
CCGAGAATGATGAAGATACTTCATCTAACCATTCAAGCATCTCTTCAACA
TCGTTCGGTTCCGGTGATGTCGTTCACGATAGGTCGAGTTATTCGAGCTA
CCAACGCATCACTTCGAGTGCATCCACCAACAACTCGAGCCGTGACACTT
ATACTGTCGGTCGTGATTTCTACGGGGTAAGTTTCTGAATGTTCGAACCG
GTCAGTCCACTAAGCGATGAAACATTAAACAGTCCTAAAGAAGAGCCTTC
AGGGAATTCGATACATTCAGATATCACGAAAAATCCTTTCAGCATTCACA
ACAGTATAACGAAACACCCATTTGTAAAGAAACAGCAGCAGCCAACAAAA
CCACCCGCCCAAGGTCTACTCCAGCTTTTGTCGGCCCAAAAATATCCACA
CCTTGCCACCCTAACGAACCATTCAAACAGCACTATCCCGAACACTAGCC
TCACTCCGCCACCTGCTCATGTGAACGCCAGCACAGAATACAGGCTAACA
CCACCTCCTCCTTCTTCTGCAAACCCTGCGCACCAACACCTTATTAATAA
CGAATACCACAACATGTTACACGAGAATAATGTTTCTACGGCAACCGAGA
ATGATGAAGATACTTCATCTAACCATTCAAGCATCTCTTCAACATCGTTC
GGTTCCGGTGATGTCGTTCACGATAGGTCGAGTTATTCGAGCTACCAACG
CATCACTTCGAGTGCATCCACCAACAACTCGAGCCGTGACACTTATACTG
TCGGTCGTGATTTCTACGGGGTAAGTTTCTGAATGTTCGAACCGGTCAGT
CCACTAAGCGATGAAACATTAAACAGTCCTAAAGAAGAGCCTTCAGGGAA
TTCGATACATTCAGATATCACGAAAAATCCTTTCAGCATTCACAACAGTA
TAACGAAACACCCATTTGTAAAGAAACAGCAGCAGCCAACAAAACCACCC
GCCCAAGGTCTACTCCAGCTTTTGTCGGCCCAAAAATATCCACACCTTGC
CACCCTAACGAACCATTCAAACAGCACTATCCCGAACACTAGCCTCACTC
CGCCACCTGCTCATGTGAACGCCAGCACAGAATACAGGCTAACACCACCT
CCTCCTTCTTCTGCAAACCCTGCGCACCAACACCTTATTAATAACGAATA
CCACAACATGTTACACGAGAATAATGTTTCTACGGCAACCGAGAATGATG
AAGATACTTCATCTAACCATTCAAGCATCTCTTCAACATCGTTCGGTTCC
GGTGATGTCGTTCACGATAGGTCGAGTTATTCGAGCTACCAACGCATCAC
TTCGAGTGCATCCACCAACAACTCGAGCCGTGACACTTATACTGTCGGTC
GTGATTTCTACGGGGTAAGTTTCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003022XLOC_003022Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005308-exon-sc0000052-1491911889:639744..640486TCONS_00005308-exon-sc0000052-1491911889:639744..640486Clytia hemisphaericaexon
TCONS_00005308-exon-sc0000052-1510915933:639744..640486TCONS_00005308-exon-sc0000052-1510915933:639744..640486Clytia hemisphaericaexon
TCONS_00005308-exon-sc0000052-1575043694:639744..640486TCONS_00005308-exon-sc0000052-1575043694:639744..640486Clytia hemisphaericaexon
TCONS_00005308-exon-sc0000052-1491911889:642196..642306TCONS_00005308-exon-sc0000052-1491911889:642196..642306Clytia hemisphaericaexon
TCONS_00005308-exon-sc0000052-1510915933:642196..642306TCONS_00005308-exon-sc0000052-1510915933:642196..642306Clytia hemisphaericaexon
TCONS_00005308-exon-sc0000052-1575043694:642196..642306TCONS_00005308-exon-sc0000052-1575043694:642196..642306Clytia hemisphaericaexon
TCONS_00005308-exon-sc0000052-1491911889:643117..643308TCONS_00005308-exon-sc0000052-1491911889:643117..643308Clytia hemisphaericaexon
TCONS_00005308-exon-sc0000052-1510915933:643117..643308TCONS_00005308-exon-sc0000052-1510915933:643117..643308Clytia hemisphaericaexon
TCONS_00005308-exon-sc0000052-1575043694:643117..643308TCONS_00005308-exon-sc0000052-1575043694:643117..643308Clytia hemisphaericaexon
TCONS_00005308-exon-sc0000052-1491911889:644758..645090TCONS_00005308-exon-sc0000052-1491911889:644758..645090Clytia hemisphaericaexon
TCONS_00005308-exon-sc0000052-1510915933:644758..645090TCONS_00005308-exon-sc0000052-1510915933:644758..645090Clytia hemisphaericaexon
TCONS_00005308-exon-sc0000052-1575043694:644758..645090TCONS_00005308-exon-sc0000052-1575043694:644758..645090Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005308-proteinTCONS_00005308-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000052supercontigsc0000052:639744..645090 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.8803 12.4682 5.09339 4.06528 39.1234 34.0747 32.0475 35.2861 13.9535 22.2714 16.333 11.5447 17.8497 17.8925 14.8197 18.8332 22.3895 19.0335 9.69212 9.73619 16.2137 18.0101 17.063 20.4353 26.1075 19.6122 33.8853 34.2488 26.5458 27.0797
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005308 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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