TCONS_00005299 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005299
Unique NameTCONS_00005299
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2147

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005299 ID=TCONS_00005299|Name=TCONS_00005299|organism=Clytia hemisphaerica|type=transcript|length=2147bp
ATTTTGGAGTTAGGTTGGGTGGTTGGAAAatccttttatttttataattt
atgaTAGTTCAGTTTACATTTGggtcattttgaaataaaaatggaaGAGC
TAGAAGGGAATTCGCAATTCTTGATCTTAAGATAGAATGAGAGGGACGCA
ATAGAGGTTCTGATTTTGAGAAACAATTCTTTTAAATGGCAATATAATTT
TTAGGTTTGGCAGGTTTCCAGGTACCGACATTTTTTCTGTCCAGCCTAAT
TCTCCTATATTAATATATATAATTTAAAGGGTATATTATTTAATGTAAGG
GTGATTTGGCACACAGAAAAtgataaatatgattattttctatattttag
ataacaaaacaaatttactaaataaaaattatatatttataCATAAAATG
TCGTCAAGGAAGAAAGTATTATTAAAAGTTATTATACTCGGTGACAGTGG
aGTTGGCAAAACTTCTTTAATGAACCAATatgtcacaaaaaaattcagca
ACCAATATAAAGCTACGATAGGAGCAGATTTTTTAACGAAAGAAGTTATG
GTTGACGACAGGCTAGTCACAATGCAGATTTGGGATACAGCTGGACAAGA
ACGCTTCCAATCTCTTGGTGTTGCATTTTACAGAGGTGCTGATTGTTGTG
TACTGGTATTCGATGTCACTGCACCAAATTCATTCAAAACGTTAGATTCC
TGGAGGGACGAATTTCTCATCCAAGCCAGTCCAAGAGACCCAGAAAATTT
CCCTTTCGTCGTTCTTGGTAACAAAGTGGATCTTGAAAACAGAGCGGTAT
CAGCAAAACGAGCCCAACAATGGTGTCATAGTAAAAACGAAATTCCATAC
TTTGAGACGTCGGCTAAAGAAGGAATAAACGTCGAACACGCTTTCCAAGC
TATCGCACGAAAAGCACTTGCACAAGAAACCGAAGTCGAACTTTACAATG
AATTTCCAGACCAAATTAAATTGACGAATGAGTCCAAACCAAGATCTAGT
GATTGTGCATGTTAATATGTTCACCAATCtcgctgaaaatatttttcttc
ggTCAAAATTAATtatattcttgttttaaaaatcataCACCACCACGACT
ATCGTCACAGTCAAGTCAGATGCAGTTGGATGTAATATTCGAAGCTTTAG
GAATCTTTATGAATTAATTTGGATTCTTCCAATGCAATGCTCTTGTCTGT
TAGTAGAATCGACGATGAAAAATTGCAATATGGCTGTATTATGCTGGAGT
AAAATGAATATATTTATTCATACCATTGGAATTTTCGTTTGCCTTAAATC
TATCCTTAAAATTGATCATCTTTTTGGTTGCTTTTGTTTGACATGGACAT
TTTCAACGATTTCAAATATTCTGTCTTATTGATAgagaatattttatttt
aaaaccgTAAAAGTCTCCTTGGAATTATTCAGAATTTTCGGTTTCGATGT
GTGAAATTCCTCCATAATCAGCNGAATTATtcagaattttcggttttgat
GTGTGAAATTCCTCCATAATCAGCACTCAAATATAGTGATGGATGCTTGT
TAGTCTACTCTTAAAATAGATATTTCTGGAAATGACCCTTCTCATCTTAG
GATTTTTTgctattgtttaatttatttaatttgtctgaatgaataaataa
aatactttaCTTTTGTATGAAAAACACTGTGATGTGATGGATTTGTTCTC
CCTAAACTTGGTTGAGGGTTTAGGAACCTTCACTACATAGACATGTTTTA
CCATGCATCATTTGATACTTTCCCTCTCTAAATGAGTACATCTCTTTTGC
AAATTTGATAACACCAAGATTTGCACTACTTGTATTCAAACTTACTGGCT
TACACCATACAGCCTTACTCCTGTAAAGATTTTTTAGTAttgttttttgt
tctttttatgttaatttttcagggttatttttccaaatattttttgacta
tATGCAATTATTATAAACAAatccttgaattttttttttttttgtgattt
ataaataattaaaaatggaATAAGAAGCGTTGTCGTAAATTATTTCACTT
TGAGCGATATTCTCGTCAACTTAGAAAGGAGATAATAATCAGGGAAATGA
AGAAATATCGCTTTTAATCTGAGATTTAACTCAAAATTATACGAGCA
Run BLAST on NCBI

transcript from alignment at sc0000052:615053..618254+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005299 ID=TCONS_00005299|Name=TCONS_00005299|organism=Clytia hemisphaerica|type=transcript|length=3202bp|location=Sequence derived from alignment at sc0000052:615053..618254+ (Clytia hemisphaerica)
ATTTTGGAGTTAGGTTGGGTGGTTGGAAAatccttttatttttataattt
atgaTAGTTCAGTTTACATTTGggtcattttgaaataaaaatggaaGAGC
TAGAAGGGAATTCGCAATTCTTGATCTTAAGATAGAATGAGAGGGACGCA
ATAGAGGTTCTGATTTTGAGAAACAATTCTTTTAAATGGCAATATAATTT
TTAGGTTTGGCAGGTTTCCAGGTACCGACATTTTTTCTGTCCAGCCTAAT
TCTCCTATATTAATATATATAATTTAAAGGGTATATTATTTAATGTAAGG
GTGATTTGGCACACAGAAAAtgataaatatgattattttctatattttag
ataacaaaacaaatttactaaataaaaattatatatttataCATAAAATG
TCGTCAAGGAAGAAAGTATTATTAAAAGTTATTATACTCGGTGACAGTGG
GTAAGTTTACATTCAATTTAGATTCTCTTTTTGGCACTAATAAAATTTTT
TCTATATAATTATCTTCTTTGAGGGATCAACTGAcagtttatttcatttt
ttaacaaGCTCCATTCTGTTCTTAGTTTGTTAAAAGTCTTTACtcttatt
tttccttttcagaGTTGGCAAAACTTCTTTAATGAACCAATatgtcacaa
aaaaattcagcaACCAATATAAAGCTACGATAGGAGCAGATTTTTTAACG
AAAGAAGTTATGGTTGACGACAGGCTAGTCACAATGCAGGTAAAAAACCT
TCAAGTGATTGTAAAATGTTACAGACAGGGTCAAATTGGTGCTTTGAGTT
ATcaattatttaatatttttgacTATTGATTGTCTGAATATTTTGTTTAA
GCTAAAGTtacattttcttcaaattatgtGCTGGTAATATCTACTTTCAT
AGTTTTCATGTCACTGATTTTTAGATTTGGGATACAGCTGGACAAGAACG
CTTCCAATCTCTTGGTGTTGCATTTTACAGAGGTAATTTCCTTAGAGAAA
AAGCAACTAGATATCCATGCGAAAAATATTCTTTAGAATTTTTAcaagcc
attttttcaaaaaagaaactttttctgttttcatcataaatatGAAATTG
TATTCATTTGACTTGTGCACAACATAGCCACTCCCATTTTTAGAATGAAG
GGTTTTAACTTATTCTCACAATAAAAATGATACTATTGTAAGTAACCTGT
ATTTATCTTATCAGGTGCTGATTGTTGTGTACTGGTATTCGATGTCACTG
CACCAAATTCATTCAAAACGTTAGATTCCTGGAGGGACGAATTTCTCATC
CAAGCCAGTCCAAGAGACCCAGAAAATTTCCCTTTCGTCGTTCTTGGTAA
CAAAGTGGATCTTGAAAACAGAGCGGTAAGTGAAAGAAATTACCTCTGAA
AggaaataattaaaattttctatGGTCACCAAAAATCTTAAAGAAGCACT
TCTGAAATTAGTTCTTGAAAAATTAGTTTGGCTCCTTTAAATAGGTAGCG
CTTATTGGGATCAGTTCTATGTTTTCCAGGTTCGTTGAGTTGTGCCAGAC
AGTTCAGTTGGGTTCAGTTGGGCCAAACAATGATCAGGACTTTATTTTGA
CATGACATAGGATTAAGTTTGCTTTTTCAGTCTGTTGATTTCGATGAATT
ATCACTGTCCTTGTTATGATATTAATGTTACAGtaggattttaggggaat
ttttcctgaggcataaacatcctatagagaaggtctggagaaagtttcag
ctagatcttattgttttcccgtaaattatgctaaacgaccccactaatAT
TAATGTTACAGTAAACAGATATTTCTTCATCGCCTTGTTCTTACATTACA
GGTATCAGCAAAACGAGCCCAACAATGGTGTCATAGTAAAAACGAAATTC
CATACTTTGAGACGTCGGCTAAAGAAGGAATAAACGTCGAACACGCTTTC
CAAGCTATCGCACGAAAAGCACTTGCACAAGAAACCGAAGTCGAACTTTA
CAATGAATTTCCAGACCAAATTAAATTGACGAATGAGTCCAAACCAAGAT
CTAGTGATTGTGCATGTTAATATGTTCACCAATCtcgctgaaaatatttt
tcttcggTCAAAATTAATtatattcttgttttaaaaatcataCACCACCA
CGACTATCGTCACAGTCAAGTCAGATGCAGTTGGATGTAATATTCGAAGC
TTTAGGAATCTTTATGAATTAATTTGGATTCTTCCAATGCAATGCTCTTG
TCTGTTAGTAGAATCGACGATGAAAAATTGCAATATGGCTGTATTATGCT
GGAGTAAAATGAATATATTTATTCATACCATTGGAATTTTCGTTTGCCTT
AAATCTATCCTTAAAATTGATCATCTTTTTGGTTGCTTTTGTTTGACATG
GACATTTTCAACGATTTCAAATATTCTGTCTTATTGATAgagaatatttt
attttaaaaccgTAAAAGTCTCCTTGGAATTATTCAGAATTTTCGGTTTC
GATGTGTGAAATTCCTCCATAATCAGCNGAATTATtcagaattttcggtt
ttgatGTGTGAAATTCCTCCATAATCAGCACTCAAATATAGTGATGGATG
CTTGTTAGTCTACTCTTAAAATAGATATTTCTGGAAATGACCCTTCTCAT
CTTAGGATTTTTTgctattgtttaatttatttaatttgtctgaatgaata
aataaaatactttaCTTTTGTATGAAAAACACTGTGATGTGATGGATTTG
TTCTCCCTAAACTTGGTTGAGGGTTTAGGAACCTTCACTACATAGACATG
TTTTACCATGCATCATTTGATACTTTCCCTCTCTAAATGAGTACATCTCT
TTTGCAAATTTGATAACACCAAGATTTGCACTACTTGTATTCAAACTTAC
TGGCTTACACCATACAGCCTTACTCCTGTAAAGATTTTTTAGTAttgttt
tttgttctttttatgttaatttttcagggttatttttccaaatatttttt
gactatATGCAATTATTATAAACAAatccttgaattttttttttttttgt
gatttataaataattaaaaatggaATAAGAAGCGTTGTCGTAAATTATTT
CACTTTGAGCGATATTCTCGTCAACTTAGAAAGGAGATAATAATCAGGGA
AATGAAGAAATATCGCTTTTAATCTGAGATTTAACTCAAAATTATACGAG
CA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003020XLOC_003020Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005299-exon-sc0000052-1491911889:615053..615502TCONS_00005299-exon-sc0000052-1491911889:615053..615502Clytia hemisphaericaexon
TCONS_00005299-exon-sc0000052-1510915933:615053..615502TCONS_00005299-exon-sc0000052-1510915933:615053..615502Clytia hemisphaericaexon
TCONS_00005299-exon-sc0000052-1575043694:615053..615502TCONS_00005299-exon-sc0000052-1575043694:615053..615502Clytia hemisphaericaexon
TCONS_00005299-exon-sc0000052-1491911889:615665..615791TCONS_00005299-exon-sc0000052-1491911889:615665..615791Clytia hemisphaericaexon
TCONS_00005299-exon-sc0000052-1510915933:615665..615791TCONS_00005299-exon-sc0000052-1510915933:615665..615791Clytia hemisphaericaexon
TCONS_00005299-exon-sc0000052-1575043694:615665..615791TCONS_00005299-exon-sc0000052-1575043694:615665..615791Clytia hemisphaericaexon
TCONS_00005299-exon-sc0000052-1491911889:615977..616034TCONS_00005299-exon-sc0000052-1491911889:615977..616034Clytia hemisphaericaexon
TCONS_00005299-exon-sc0000052-1510915933:615977..616034TCONS_00005299-exon-sc0000052-1510915933:615977..616034Clytia hemisphaericaexon
TCONS_00005299-exon-sc0000052-1575043694:615977..616034TCONS_00005299-exon-sc0000052-1575043694:615977..616034Clytia hemisphaericaexon
TCONS_00005299-exon-sc0000052-1491911889:616267..616427TCONS_00005299-exon-sc0000052-1491911889:616267..616427Clytia hemisphaericaexon
TCONS_00005299-exon-sc0000052-1510915933:616267..616427TCONS_00005299-exon-sc0000052-1510915933:616267..616427Clytia hemisphaericaexon
TCONS_00005299-exon-sc0000052-1575043694:616267..616427TCONS_00005299-exon-sc0000052-1575043694:616267..616427Clytia hemisphaericaexon
TCONS_00005299-exon-sc0000052-1491911889:616904..618254TCONS_00005299-exon-sc0000052-1491911889:616904..618254Clytia hemisphaericaexon
TCONS_00005299-exon-sc0000052-1510915933:616904..618254TCONS_00005299-exon-sc0000052-1510915933:616904..618254Clytia hemisphaericaexon
TCONS_00005299-exon-sc0000052-1575043694:616904..618254TCONS_00005299-exon-sc0000052-1575043694:616904..618254Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000052supercontigsc0000052:615053..618254 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
69.2961	71.0449	76.2195	78.8123	7.00152	2.89808	2.22499	3.71965	24.8963	23.3544	24.4217	23.7926	36.9136	30.3096	37.9745	38.4173	16.8892	25.2054	33.7714	30.9391	54.3811	46.5211	52.5516	56.0533	2.91986	2.48745	39.9616	41.7872	51.5887	51.4424
Blast
[Close]
BLAST of TCONS_00005299 vs. Swiss-Prot (Human)
Match: RAB7A (Ras-related protein Rab-7a OS=Homo sapiens GN=RAB7A PE=1 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 6.084e-125
Identity = 178/207 (85.99%), Postives = 188/207 (90.82%), Query Frame = 2 
Query:  398 MSSRKKVLLKVIILGDSGVGKTSLMNQYVTKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNSFKTLDSWRDEFLIQASPRDPENFPFVVLGNKVDLENRAVSAKRAQQWCHSKNEIPYFETSAKEGINVEHAFQAIARKALAQETEVELYNEFPDQIKLTNESKPRSS--DCAC 1012
            M+SRKKVLLKVIILGDSGVGKTSLMNQYV KKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPN+FKTLDSWRDEFLIQASPRDPENFPFVVLGNK+DLENR V+ KRAQ WC+SKN IPYFETSAKE INVE AFQ IAR AL QETEVELYNEFP+ IKL    + ++S   C+C
Sbjct:    1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKLDKNDRAKASAESCSC 207
The following BLAST results are available for this feature:
BLAST of TCONS_00005299 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB7A6.084e-12585.99Ras-related protein Rab-7a OS=Homo sapiens GN=RAB7... [more]
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