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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005295 ID=TCONS_00005295|Name=TCONS_00005295|organism=Clytia hemisphaerica|type=transcript|length=3996bpRun BLAST on NCBI protein sequence of TCONS_00005295-protein >TCONS_00005295-protein ID=TCONS_00005295-protein|Name=TCONS_00005295-protein|organism=Clytia hemisphaerica|type=polypeptide|length=764bp MESPNYQFTKKSNDFDSEATETDVEENSGNVSDKKDSEKLLSNEDDEQEERun BLAST on NCBI transcript from alignment at sc0000052:584928..599617+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005295 ID=TCONS_00005295|Name=TCONS_00005295|organism=Clytia hemisphaerica|type=transcript|length=14690bp|location=Sequence derived from alignment at sc0000052:584928..599617+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000052:584928..599617+ >TCONS_00005295 ID=TCONS_00005295|Name=TCONS_00005295|organism=Clytia hemisphaerica|type=CDS|length=36720bp|location=Sequence derived from alignment at sc0000052:584928..599617+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00005295 vs. Swiss-Prot (Human)
Match: CXXC1 (CXXC-type zinc finger protein 1 OS=Homo sapiens GN=CXXC1 PE=1 SV=2) HSP 1 Score: 238.81 bits (608), Expect = 3.728e-66 Identity = 121/311 (38.91%), Postives = 189/311 (60.77%), Query Frame = 2
Query: 1232 RSNKKDPSSTNRKEKEKEVYTPKHCLGPGCVNAAKLNSKYCSNECGVQLQIRRLQVILPTRGINCSKIYNATVLAEEK----IQKYKRTQQECQEILLALDKEYKQLDELIQKSKGLTIKEENQNEEDKDGDIDLTTYCVSCGIP---RIAFRHMEKCWAKLECLMSFGAIQKS----AGNLFCDTFMVQQGTYCKRLKIMCPEHYKEGKIEANEVCGCPLVDDQQKETNKFCRQARKKCIRHVAWQRLRKGEIDLKRVHQWWKLEEAYEQERQQQIEISNRRNVLAVLLNDTFDHNYNRSPEKVSLSSNA 2131
R++ KDP+S CLGPGCV A+ +SKYCS++CG++L R+ ILP R + + +AEE +++ +R QQ + L +++ + +L+ +I ++K ++E+ ++ E D DL +CVSCG P R+A RHME+C+AK E SFG++ + A LFCD + Q TYCKRL+++CPEH ++ K+ A+EVCGCPLV D + T FCR +++C RH W++LR+ E+DL+RV W+KL+E +EQER + ++NR +LA++L+ T H+ P L S+A
Sbjct: 363 RADAKDPASL------------PQCLGPGCVRPAQPSSKYCSDDCGMKLAANRIYEILPQR---IQQWQQSPCIAEEHGKKLLERIRREQQSARTRLQEMERRFHELEAIILRAKQQAVREDEESNEGDSDDTDLQIFCVSCGHPINPRVALRHMERCYAKYESQTSFGSMYPTRIEGATRLFCDVYNPQSKTYCKRLQVLCPEHSRDPKVPADEVCGCPLVRDVFELTGDFCRLPKRQCNRHYCWEKLRRAEVDLERVRVWYKLDELFEQERNVRTAMTNRAGLLALMLHQTIQHD----PLTTDLRSSA 654 The following BLAST results are available for this feature:
BLAST of TCONS_00005295 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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