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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005294 ID=TCONS_00005294|Name=TCONS_00005294|organism=Clytia hemisphaerica|type=transcript|length=1369bp
ACGATTTATAGCAACCGAAAAAAACGTACATGACAAGCATTTTGAACTAC
CCTCGCTgttttgtttgacattttgaattcatttgtaATTGTGACAAAGT
GTAGTTTGTTTTACCTAGAAGTTTATATACCATCACGCAGCAATGAAGAA
GGGAAATTATTGTGGCATCGTGGCCTTCCTCGCATTACTTTCATTCGTTT
ACTGTGACCATACTGTAACGGTCAAACAATATTGCTGGGAGTGCTCCCTA
AAGAATAACACTCATTGTTCAGTGTGGCAATCAACAAAAGTCAGATGTCC
TGAACAAGATGAACTTCTCATCAACTTCTTGTGTTTTGAGAGAAGTTACA
ACGTGTCGAATACAATTTACAGTGAGAGAGGATGTATACGACAAGATTAT
TATGATGCCGGATACTTGTGCtttaaagatttggaaaattgCCAGACCAA
AGTTTGCGAAGACCACTTGTGCAACAGCTCACCAAACTTCCAATCCTCAT
TCGTCAACATCGCTTTTTTGTCTCTCTTGGCAACCGTATCTATggttaaa
aatttgttttgaaaatgaaaaaatgacacCTCCAGTTGAATATGGTTTTG
GCAATTCTTGATAtccatgacgtaatcttttaaacggaaacacccgaaaa
acaccgggcgtttttcaccacttttaaattttaaacaatcaaactggtgg
caaacgcctgatgtttttcgggtgttttcgcATAAAAGATTACgccatga
atatcaagaatatgGCGTGTAGCGAAAGGACCAATGAAGTCGAAATGTTC
TACCGGAAAGAATTGTCATTAAGATAACATTTTTCTCGAAAGTTGTTATT
ATACTTAACACGTATGTATGGTGAAGAAAACAATATACCTTGTAAATGTA
ATAATTTGATATAAAAATTTACAGGTCGTCCGGATTTTAATTGGATAATG
GACGGACTATAAACAAAATGatttaatcaaattaatttttgcgagatTAA
ATTCCGCGAGCCAAGAAAGACCTTCTTTTTTAATATCGCATAGcagcatt
ttgaaaaatttcgcaaatGTATCTAAAAGCACTTGAAAATTACGATGTTT
TTTTATGGCGAGACTCGGATTCTGAAAATTTCACGTgtatttattttcgc
gaaaaaagcaaaaaaacttaatctcgcgaaaattcgTCTGATTAAAGTAA
TtaatatttaaataaaatcctttgtaaataaaatttaaaCTATTCTTCAA
AAACTACTTTGGTTTAAACAAATTTTGGAAATGGATGTTCACGATAATAA
GCGATAAAGATATTGCATCGTCGCTAGAAGAATGACagcataaaaaaaat
taggagCAGGAAAAGAAGA Run BLAST on NCBI protein sequence of TCONS_00005294-protein >TCONS_00005294-protein ID=TCONS_00005294-protein|Name=TCONS_00005294-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
MKKGNYCGIVAFLALLSFVYCDHTVTVKQYCWECSLKNNTHCSVWQSTKV
RCPEQDELLINFLCFERSYNVSNTIYSERGCIRQDYYDAGYLCFKDLENC
QTKVCEDHLCNSSPNFQSSFVNIAFLSLLATVSMVKNLF Run BLAST on NCBI transcript from alignment at sc0000052:509982..514931+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005294 ID=TCONS_00005294|Name=TCONS_00005294|organism=Clytia hemisphaerica|type=transcript|length=4950bp|location=Sequence derived from alignment at sc0000052:509982..514931+ (Clytia hemisphaerica)
ACGATTTATAGCAACCGAAAAAAACGTACATGACAAGCATTTTGAACTAC
CCTCGCTgttttgtttgacattttgaattcatttgtaATTGTGACAAAGT
GTAGTTTGTTTTACCTAGAAGTTTATATACCATCACGCAGCAATGAAGAA
GGGAAATTATTGTGGCATCGTGGCCTTCCTCGCATTACTTTCATTCGGTA
AGAGACGATTATATCTATCTTTTAAATAAACTGTTTAGGGTGGCATATTT
CTGTTGTTTTCTTTAAAGCTTGTAAGATAAAAGTTCGATTGAATTAAATA
CCGCCGTAACACTATCACTTTTTTAAGACCTTTCGAGAGCGAGGATAAAA
TCCGCAAAACTTTAAACCTAAATTGACtcattaaatgaaaacaaactcTT
AGTCGATTGAGGATGAGCTTATGACTGTGATAAGATCTTTAGAGAAGGAG
GGGTGACAAGTAATAAAAGGTTGTCACAAAACTTGCTTCTTACTGTCACA
AAACTTTACTGGAAGGTTTTGTAAGtttcaaaaagatttgagaAATAGGG
GTTCTATTTGCCATCATATGTAGAATTAAATTCTAAGAAaggaatgaaaa
ttttgttttttccgGGTAGGGTTTATTTTGTGATGAAAAAGAAGATAGTA
ATAAAGGGAGTTGCAAATGCCCGTCGTCTACacactttaaaaaaagtttg
tgcaAAAAACGTTAACTATTATGCCGTAAGAAGCCTGTTAAACTAGCAAA
TATCCacttataattttcttttgtaGTTTACTGTGACCATACTGTAACGG
TCAAACAATATTGCTGGGAGTGCTCCCTAAAGAATAACACTCATTGTTCA
GTGTGGCAATCAACAAAAGTCAGATGTCCTGAACAAGATGAACTTCTCAT
CAACTTCTTGTGTTTTGAGAGAAGTTACAACGTGTCGAATACAATTTACA
GTGAGAGAGGATGTATACGACAAGATTATTATGATGCCGGATACTTGTGC
tttaaagatttggaaaattgCCAGGTacacattgggcttttccagaaaga
aatttacccccactgttgaagatattgatttttcgaagtatcgaaccccc
tggatatcctactttattagtaaagacgccctggatatccgctccctcgt
agatatttaacccccctggatatccacttttgaacaaaaatcgttaaccc
cctggatatccgatatcctcaataggggggggggggggggNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNTCAAAGAATGCTATCCCCACTGTAgcgattttttatc
ttcattttccttttgaaatattctactCTAAGGACCCGAATAATAAAGGG
GTCCAAATATAAATGGGGGAGGGGGTCCgaaatttctgtaaaatataact
aggtcacagtgtaacACACTGAGGCGACCGCGGTCAAATcttatgaaatt
tatgaatttgtacACCATTTACCATTATGAACAGTACATCGAAAAATCCT
TAAATCTTATAGAAAGTTTGGTTTGACTACAGTTAGTTTTAACCAGAcgg
ttttccaagttttttaaGAATTATAAAATCGAAGTGATTCGCGATCTGAA
AATGTCACGAATTTGAGCCCTAAAAAACactgttttcatgctgtttgTAA
CAGTCGGGTCGAAAAACTATGGAGTATATTGtactttttcctttaaaact
gttttatctCCGTAATACTTTGCAAATACAGAAATCTAAGGAAGATANNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
AATTTTTATTGGGCCAAGAAAAAGCTCTACGAAcaagaattttttgaatt
aaatttcaagaattatttcaaaataaagaaaacagtgTTGCAGTGTCAAG
ATGTAGCcaggtttttgaaatatctcTCAATTTTCTAACCCAAGCAAATC
GCAcccaagaaaaaagtttaaattcattttaaatgtcaaaataacAGTAA
AAGTTTCcatattgtttttgttatttattcATGATAAACAGGAAAAAAAG
GATTAGGAAACCGAATGTTGATCGTGATCTATGCCAGTTTTTTGGTATAC
TATCAAGGGAGTAAAAATTTCCCGAAGGGAGTCATTATTTTTGCGTAAAT
TTATACTCCCGGAAGTAATAATTTTCTGGGAAAAGATTACTGGGGAGTAA
TTATTTCCCAGTAAATAATGACTGGAGAGTATAAATTTTGGGGAGTAATA
TTTTACTGTGACACCGGCTTTAAACaaaacagtttctcaaaatttgtgct
tGTGCGGAGCCAAAAGGGGAAAAAGCTGTTCTAGGGGATGCacgcctttt
tataagaacaagtttatAAGAGCATGAGGCTCAATTCTGGCCGAAACTCA
GTGAGAGCAAATTAAGTATAGTCTTAgcttcaaatatcaaaaatgactta
aaaatgacaacttcatttttcatcttcattttccttttttttatttttgt
atatttagtAAACTTTCTTGATAACATTCTACTCTTgagtatcttttcaa
caagcagaAAACCgctatttatttcaaattttatcaaaagcttttttgtc
ttcactgcagattatattgagccAGACTTAATTTCGAGATCCAAACTACT
CGTTTTAGAGCTTTAATTATGCCAAAAGACTTTATTAGCAACGTAAAAGT
TATCTATATGAAGCGATCCTCAAACATgtcattatccctttaaaatttca
aagattttcaaagttttaggtTTTGAAACATAACGGAAAACTTACCTTAT
TAATGTTGTGGGATATGGTTGGTACAAGTTACAATCGAATACTTTCCAGC
CAGTTGAACTAATGACATACctgtaaaaaatcgaaaaaataactGTTACT
AAGGAAAAACACACATATAATTTCGAAATAACAGCCACGTGGTCCCTTGT
GCGGAATTTTCGCAAAGTACTTTGATGTACGCTTACAACTTGTGTCTCGT
TTTCGAAGTAAATGACAACTTGTTTCTTCTAAAAATTCGAATATTAtacc
ttttcattttcttcttcttcttataGACCAAAGTTTGCGAAGACCACTTG
TGCAACAGCTCACCAAACTTCCAATCCTCATTCGTCAACATCGCTTTTTT
GTCTCTCTTGGCAACCGTATCTATggttaaaaatttgttttgaaaatgaa
aaaatgacacCTCCAGTTGAATATGGTTTTGGCAATTCTTGATAtccatg
acgtaatcttttaaacggaaacacccgaaaaacaccgggcgtttttcacc
acttttaaattttaaacaatcaaactggtggcaaacgcctgatgtttttc
gggtgttttcgcATAAAAGATTACgccatgaatatcaagaatatgGCGTG
TAGCGAAAGGACCAATGAAGTCGAAATGTTCTACCGGAAAGAATTGTCAT
TAAGATAACATTTTTCTCGAAAGTTGTTATTATACTTAACACGTATGTAT
GGTGAAGAAAACAATATACCTTGTAAATGTAATAATTTGATATAAAAATT
TACAGGTCGTCCGGATTTTAATTGGATAATGGACGGACTATAAACAAAAT
GatttaatcaaattaatttttgcgagatTAAATTCCGCGAGCCAAGAAAG
ACCTTCTTTTTTAATATCGCATAGcagcattttgaaaaatttcgcaaatG
TATCTAAAAGCACTTGAAAATTACGATGTTTTTTTATGGCGAGACTCGGA
TTCTGAAAATTTCACGTgtatttattttcgcgaaaaaagcaaaaaaactt
aatctcgcgaaaattcgTCTGATTAAAGTAATtaatatttaaataaaatc
ctttgtaaataaaatttaaaCTATTCTTCAAAAACTACTTTGGTTTAAAC
AAATTTTGGAAATGGATGTTCACGATAATAAGCGATAAAGATATTGCATC
GTCGCTAGAAGAATGACagcataaaaaaaattaggagCAGGAAAAGAAGA
Coding sequence (CDS) from alignment at sc0000052:509982..514931+ >TCONS_00005294 ID=TCONS_00005294|Name=TCONS_00005294|organism=Clytia hemisphaerica|type=CDS|length=1260bp|location=Sequence derived from alignment at sc0000052:509982..514931+ (Clytia hemisphaerica)
ATGAAGAAGGGAAATTATTGTGGCATCGTGGCCTTCCTCGCATTACTTTC
ATTCGTTTACTGTGACCATACTGTAACGGTCAAACAATATTGCTGGGAGT
GCTCCCTAAAGAATAACACTCATTGTTCAGTGTGGCAATCAACAAAAGTC
AGATGTCCTGAACAAGATGAACTTCTCATCAACTTCTTGTGTTTTGAGAG
AAGTTACAACGTGTCGAATACAATTTACAGTGAGAGAGGATGTATACGAC
AAGATTATTATGATGCCGGATACTTGTGCtttaaagatttggaaaattgC
CAGACCAAAGTTTGCGAAGACCACTTGTGCAACAGCTCACCAAACTTCCA
ATCCTCATTCGTCAACATCGCTTTTTTGTCTCTCTTGGCAACCGTATCTA
TggttaaaaatttgttttgaATGAAGAAGGGAAATTATTGTGGCATCGTG
GCCTTCCTCGCATTACTTTCATTCGTTTACTGTGACCATACTGTAACGGT
CAAACAATATTGCTGGGAGTGCTCCCTAAAGAATAACACTCATTGTTCAG
TGTGGCAATCAACAAAAGTCAGATGTCCTGAACAAGATGAACTTCTCATC
AACTTCTTGTGTTTTGAGAGAAGTTACAACGTGTCGAATACAATTTACAG
TGAGAGAGGATGTATACGACAAGATTATTATGATGCCGGATACTTGTGCt
ttaaagatttggaaaattgCCAGACCAAAGTTTGCGAAGACCACTTGTGC
AACAGCTCACCAAACTTCCAATCCTCATTCGTCAACATCGCTTTTTTGTC
TCTCTTGGCAACCGTATCTATggttaaaaatttgttttgaATGAAGAAGG
GAAATTATTGTGGCATCGTGGCCTTCCTCGCATTACTTTCATTCGTTTAC
TGTGACCATACTGTAACGGTCAAACAATATTGCTGGGAGTGCTCCCTAAA
GAATAACACTCATTGTTCAGTGTGGCAATCAACAAAAGTCAGATGTCCTG
AACAAGATGAACTTCTCATCAACTTCTTGTGTTTTGAGAGAAGTTACAAC
GTGTCGAATACAATTTACAGTGAGAGAGGATGTATACGACAAGATTATTA
TGATGCCGGATACTTGTGCtttaaagatttggaaaattgCCAGACCAAAG
TTTGCGAAGACCACTTGTGCAACAGCTCACCAAACTTCCAATCCTCATTC
GTCAACATCGCTTTTTTGTCTCTCTTGGCAACCGTATCTATggttaaaaa
tttgttttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005294-exon-sc0000052-1491911889:509982..510178 | TCONS_00005294-exon-sc0000052-1491911889:509982..510178 | Clytia hemisphaerica | exon |
| TCONS_00005294-exon-sc0000052-1510915933:509982..510178 | TCONS_00005294-exon-sc0000052-1510915933:509982..510178 | Clytia hemisphaerica | exon |
| TCONS_00005294-exon-sc0000052-1575043694:509982..510178 | TCONS_00005294-exon-sc0000052-1575043694:509982..510178 | Clytia hemisphaerica | exon |
| TCONS_00005294-exon-sc0000052-1491911889:510758..511005 | TCONS_00005294-exon-sc0000052-1491911889:510758..511005 | Clytia hemisphaerica | exon |
| TCONS_00005294-exon-sc0000052-1510915933:510758..511005 | TCONS_00005294-exon-sc0000052-1510915933:510758..511005 | Clytia hemisphaerica | exon |
| TCONS_00005294-exon-sc0000052-1575043694:510758..511005 | TCONS_00005294-exon-sc0000052-1575043694:510758..511005 | Clytia hemisphaerica | exon |
| TCONS_00005294-exon-sc0000052-1491911889:514008..514931 | TCONS_00005294-exon-sc0000052-1491911889:514008..514931 | Clytia hemisphaerica | exon |
| TCONS_00005294-exon-sc0000052-1510915933:514008..514931 | TCONS_00005294-exon-sc0000052-1510915933:514008..514931 | Clytia hemisphaerica | exon |
| TCONS_00005294-exon-sc0000052-1575043694:514008..514931 | TCONS_00005294-exon-sc0000052-1575043694:514008..514931 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000052 | supercontig | sc0000052:509982..514931 + |
Blast
The following BLAST results are available for this feature:
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