TCONS_00005292 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005292
Unique NameTCONS_00005292
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length515

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005292 ID=TCONS_00005292|Name=TCONS_00005292|organism=Clytia hemisphaerica|type=transcript|length=515bp
aaaatacataGTAAAGAAAGAAATTCATAGCGGAGGTGACGAGTAAGTGA
CGACTGAAATTTCTTCAAGGAGAGTTATTCAATTGTGTCTTTCTTGACTA
GAACACATCTCTCAAGAGTCAAACACTTTGTGAATCATACTTACCGGAAG
AAGATTacgaaaaatgaagaatttgattttctttgtcaCTTTGTCATCGT
TGATGGCGGGTTGTTTTTCTGTCAAGACTAAAAATTCGGATTCTGATTCT
GTGAAAAACAACTTGAAGCGAATCATCAACACTGCTCTTGATGCCCTCGT
TAATATTGAAGATAATGCAAACGGAGTTACCGCGCGGTCGGACGAATTGA
GTGCTCAAGCAGCTGCTACATTATCTGACGAGGAGACCGCAAGGAAGGAA
ATTGAAGAAGACGACTCTCTTTCAAACGAAATTAAAGACTTAGAGAAGAT
CTTGGACGCGGCTGAAAAGAGAGATAACCCAAAACGAGAAAGCCGAGATG
ATAAAGGAGAAAAAC
Run BLAST on NCBI

protein sequence of TCONS_00005292-protein

>TCONS_00005292-protein ID=TCONS_00005292-protein|Name=TCONS_00005292-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
MKNLIFFVTLSSLMAGCFSVKTKNSDSDSVKNNLKRIINTALDALVNIED
NANGVTARSDELSAQAAATLSDEETARKEIEEDDSLSNEIKDLEKILDAA
EKRDNPKRESRDDKGEK
Run BLAST on NCBI

transcript from alignment at sc0000052:358815..359889+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005292 ID=TCONS_00005292|Name=TCONS_00005292|organism=Clytia hemisphaerica|type=transcript|length=1075bp|location=Sequence derived from alignment at sc0000052:358815..359889+ (Clytia hemisphaerica)
aaaatacataGTAAAGAAAGAAATTCATAGCGGAGGTGACGAGTAAGTGA
CGACTGAAATTTCTTCAAGGAGAGTTATTCAATTGTGTCTTTCTTGACTA
GAACACATCTCTCAAGAGTCAAACACTTTGTGAATCATACTTACCGGAAG
AAGATTacgaaaaatgaagaatttgattttctttgtcaCTTTGTCATCGT
TGATGGCGGGTTGTTTTTCTGTCAAGACTAAAAATTCGGATTCTGATTCT
GTGAAAAACAGTAAGTCattgttgtatttttttgttgtaGACTTGTAATC
TAGATATACGTGTGGACGCTTTTGCTTAGCTTCAGAACTTTCATACTGCT
TTTATTTCACGTTGACTGTGATAATCTATTATGGCTCTGTTCCTTTCATT
AGTTAGTGGTGAGTATGTATATGTGTTTTGAAGCGAGCCGGAGACGGATA
GGTtttgatttgtctagatcctaaTCGACTGAGGATGACGGTAAATCagt
acttttaccgtcctcgattttgcgcgGTACAAATAGCTTCAGTCACTCAG
CCGCCGTCCTCAAACATGCAAATTCACGAACTCGCTTAAAGGTCTCATAA
AGGAAGGAGTGTTTCACGCAGAGCTTATTTCGTTACGAAGAGTTCTCTTT
GGGAGGAAGTGTGCACTACGACTTTCGACACTCGGCGTGATTTCCCATTA
CACTTTCCTCAAGTTTAAAAGAGTCTATTTTTATGCAGTGGCCGTTACTT
TGAGACACCAGAACATTTTCTATGGCaaaagtatttcaactttggtTAAA
TTGTTCATTCTTTAATTTAGACTTGAAGCGAATCATCAACACTGCTCTTG
ATGCCCTCGTTAATATTGAAGATAATGCAAACGGAGTTACCGCGCGGTCG
GACGAATTGAGTGCTCAAGCAGCTGCTACATTATCTGACGAGGAGACCGC
AAGGAAGGAAATTGAAGAAGACGACTCTCTTTCAAACGAAATTAAAGACT
TAGAGAAGATCTTGGACGCGGCTGAAAAGAGAGATAACCCAAAACGAGAA
AGCCGAGATGATAAAGGAGAAAAAC

Coding sequence (CDS) from alignment at sc0000052:358815..359889+

>TCONS_00005292 ID=TCONS_00005292|Name=TCONS_00005292|organism=Clytia hemisphaerica|type=CDS|length=702bp|location=Sequence derived from alignment at sc0000052:358815..359889+ (Clytia hemisphaerica)
atgaagaatttgattttctttgtcaCTTTGTCATCGTTGATGGCGGGTTG
TTTTTCTGTCAAGACTAAAAATTCGGATTCTGATTCTGTGAAAAACAACT
TGAAGCGAATCATCAACACTGCTCTTGATGCCCTCGTTAATATTGAAGAT
AATGCAAACGGAGTTACCGCGCGGTCGGACGAATTGAGTGCTCAAGCAGC
TGCTACATTATCTGACGAGGAGACCGCAAGGAAGGAAATTGAAGAAGACG
ACTCTCTTTCAAACGAAATTAAAGACTTAGAGAAGATCTTGGACGCGGCT
GAAAAGAGAGATAACCCAAAACGAGAAAGCCGAGATGATAAAGGAGAAAA
AatgaagaatttgattttctttgtcaCTTTGTCATCGTTGATGGCGGGTT
GTTTTTCTGTCAAGACTAAAAATTCGGATTCTGATTCTGTGAAAAACAAC
TTGAAGCGAATCATCAACACTGCTCTTGATGCCCTCGTTAATATTGAAGA
TAATGCAAACGGAGTTACCGCGCGGTCGGACGAATTGAGTGCTCAAGCAG
CTGCTACATTATCTGACGAGGAGACCGCAAGGAAGGAAATTGAAGAAGAC
GACTCTCTTTCAAACGAAATTAAAGACTTAGAGAAGATCTTGGACGCGGC
TGAAAAGAGAGATAACCCAAAACGAGAAAGCCGAGATGATAAAGGAGAAA
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003015XLOC_003015Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005292-proteinTCONS_00005292-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005292-exon-sc0000052-1491911889:358815..359074TCONS_00005292-exon-sc0000052-1491911889:358815..359074Clytia hemisphaericaexon
TCONS_00005292-exon-sc0000052-1510915933:358815..359074TCONS_00005292-exon-sc0000052-1510915933:358815..359074Clytia hemisphaericaexon
TCONS_00005292-exon-sc0000052-1575043694:358815..359074TCONS_00005292-exon-sc0000052-1575043694:358815..359074Clytia hemisphaericaexon
TCONS_00005292-exon-sc0000052-1491911889:359635..359889TCONS_00005292-exon-sc0000052-1491911889:359635..359889Clytia hemisphaericaexon
TCONS_00005292-exon-sc0000052-1510915933:359635..359889TCONS_00005292-exon-sc0000052-1510915933:359635..359889Clytia hemisphaericaexon
TCONS_00005292-exon-sc0000052-1575043694:359635..359889TCONS_00005292-exon-sc0000052-1575043694:359635..359889Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000052supercontigsc0000052:358815..359889 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.579702	0.678361	0.262547	0.128431	0.938112	2.22393	96.7397	109.405	137.66	116.903	72.5922	127.251	32.3855	29.1483	0.13167	0.211952	28.2867	32.4721	74.9343	99.8222	60.757	63.4804	20.472	29.4891	30.6221	28.7737	53.2574	40.2106	1.02948	1.57331
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005292 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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