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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005287 ID=TCONS_00005287|Name=TCONS_00005287|organism=Clytia hemisphaerica|type=transcript|length=737bp
CTTCATTAATAGACTCGTCATTCAGTTTCGTTCCATGTGCTTGTGTAACA
AAAAAACTAAAGTTCTTCTTCTAAGAAAATTTGATGATGCTCATCTTCTA
AGCAGAAACTATCAAGAAGAGTGAAATGTACATCAAATGTAGTGTTTGTG
TGGTTGATAGCTTCAAAGAATCAACAAGTGGAAGACTGAACAAATTCGAT
GTTGTTTCGATCGTGGATAGCGTTGTTATTGACCTTGGTCTTAGTCTTGC
AAGGTATCAGTGGTGCTAGCAGCAGAACATTCAAACAGAACACGCCCTGT
TTACCGCATTTCAATCGTAATTGTGGAAAGaaAGATGAAGGGGCAAATCG
GCGTCCGGTTAAATGGATAATCATCCTAAACAAGGTTTTCAAAATACCAC
AAAGACGATGGTTATTCACAAAGAAATGAAAACGCgaatcatttttaaaa
caacAAATATGTGTGAGACTGCGTGATATCTGAAGAAACACTTCTTGCCG
TTCTGcctaaaatttttgtgaaaagctCCGTGAGCGTTCAAATAATGAAG
AACGCTATGATTTTTATAGGAGTATGGAAGTTTTGTAATAATCtttaaag
atgtttttttgTATCTTACTCTATCCAAGGCATGTATttacaatttctga
aaaatactATGAGGCCCttagtcaaccctcaattcacgttttcacgcaca
aaattttgccaattcacgtattcactcgcgataaaaa Run BLAST on NCBI transcript from alignment at sc0000052:293947..296920+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005287 ID=TCONS_00005287|Name=TCONS_00005287|organism=Clytia hemisphaerica|type=transcript|length=2974bp|location=Sequence derived from alignment at sc0000052:293947..296920+ (Clytia hemisphaerica)
CTTCATTAATAGACTCGTCATTCAGTTTCGTTCCATGTGCTTGTGTAACA
AAAAAACTAAAGTTCTTCTTCTAAGAAAATTTGATGATGCTCATCTTCTA
AGCAGAAACTATCAAGAAGAGTGAAATGTACATCAAATGTAGTGTTTGTG
TGGTTGATAGCTTCAAAGAATCAACAAGTGGAAGACTGGTAAGAAATTAT
CTTCTGATACCTCCccctagcctagaaatctaaaccagattgattcagtc
actttgtaaaatctgatggtaagttgtgactgaatatctaAATATCagtt
tttcaaggcaaacttaaagTTCCGTACATCATAAATATCATTAAAGCACT
GATAACGCTATATTGCCGTCAGCCGTATCTTGGCTTTCTAAAAACTGGAT
TAGTCAACCAGGCTAACCCCTCTGGATGCGGCCGGGTAGATAGAGAATTC
ATGGGTTGCTGGTACGATCACCAGTCACCACCCATTCAGCGAAGGAGTAG
TTTACATTAGGAAATCTGATCTGGGGTGAggtactgggagctgagagaaG
GTATGACACTCAGCATTCAATCTCATaagtctagcgcaaatagaaaaggt
aGACTCTCTCTTACTTCCAGCTccaccgacagccaccagatgaatatact
tacttactttactttCACCCTGGGTATGCAGGTTGCGTGCGAAtagtatg
tccgagccaaagatCGACAATCGATTCTTTGAGAACGAAATTTTGTccca
ttttgacatttttacaacTCTGAAGACAACTTAaagccaaaattttgaaa
ctttaatCCAAATTACGAGAATTCCTGGAACGCCTTGAGAGCTAAATTCA
TGACTGCACACCCTATCAGGAGCTTCAAAGAAGAGTGAGAAAATAAACTC
TGAATAAGTGTAAAATTCAAATCGTTTCATCGATTTTAACAGAATTGCAC
AAAATTAGATACTTAGAGactttaaatattttcagttaATTCTTCAGAGT
TTATATTTCATTGCTTCCAAAATTCAGATTTACACCTTTCCTGCAAATAG
GTAATCATTGTAATGAGCTTCTTTCTAAAAGTGCTGAGATTTTAATATAG
CTAGCAAtcggcttttccagaaaaaaactttacccccccctgttgaggat
atccactttaaaaaatatgctcaaccctggatatcctctcttataaagat
gcttacccctggatatattattttttactagaaaagaaactttgcccccc
tggatatcctctctcttgtagatatttaaccccctggataaccacttttg
aacaaaaattgttaaccccctggatatccgatatcctcaacagggggggg
gggcacggactatttccgGAAAAGCCCGATGGGCTAAAATTGaatggtat
tttttttcacCGGAAACATTTTTTGTCGTTTCGTTAAATGGTGTTATCTT
TTAAGTAAAGTCTCCATAAAAATTGACCCAGAAATTTTCTGGTTTCAGCA
AATATATATTCAGAATTTTCATATGTCTAGGACCAAAAGTTACAATCCTC
AGAAGTAGGTTAAAATTGGTAGATTGGTCcgaaattatttttcatcatta
ttttcgaacatttttaaagctatcttttcaacgaggtatTAGTTTTCCTC
GTATCTTTTCTTCTTCAAGAGCAATGTATTAGACTTATTAAGACTTCCAA
TTCTTTGGAGGATATCTTTCAAAGtagaattctgaaaatatcCTTGACAA
GTATTCATTTTTATACCtcgtaagtaagtaagtaagtctgtgaccgcagt
cggaggcgacccaaaggttcctctttcgatagctatctacccgaaggtag
gggagggcgccaatCTTTCTCCCTGAATTGCTTCACTTACCCTCGAtctt
tctcttaattgctgagcatcaagtagagtggcatcaagtaccattttgag
aatctttggtataacCCGGCTGGAGGTTGAACcgacaaccttgcgcaccg
tagccggatgctctaccattGCACTACGGCACACTCGTAGATAAGATTCA
TAGAGGTCCAATACAATTTTACACGTCAATTTACTTCATAGAACAAATTC
GATGTTGTTTCGATCGTGGATAGCGTTGTTATTGACCTTGGTCTTAGTCT
TGCAAGGTATCAGTGGTGCTAGCAGCAGAACATTCAAACAGAACACGCCC
TGTTTACCGCATTTCAATCGTAATTGTGGAAAGGTAAAGTTCTAATTTTT
ATAAACTAAAATAGAGTCTTGAGTTAGTTTAAGAATGGTAGCTgcaataa
atttaaaaaataaatctctCATAGAGCCAATTGGCAAAACCTAGTATCCC
CTCCCCGAGAAACTAACTATAAGTTATCTGTAAAAATCTCAGACAGGggc
aaaattttcgaaattcagtctctcacAGGGTCGATGTTCGAACTTTGGCT
CGGGCATACCTGTCACCTCGCAAAATCCAGTACCCCCTGAGAGAAGCTTC
TAAAGTCATCAGTAAAAATCTCTGTGGAACTATAATGATGAattataatg
attttttttaattctagaaAGATGAAGGGGCAAATCGGCGTCCGGTTAAA
TGGATAATCATCCTAAACAAGGTTTTCAAAATACCACAAAGACGATGGTT
ATTCACAAAGAAATGAAAACGCgaatcatttttaaaacaacAAATATGTG
TGAGACTGCGTGATATCTGAAGAAACACTTCTTGCCGTTCTGcctaaaat
ttttgtgaaaagctCCGTGAGCGTTCAAATAATGAAGAACGCTATGATTT
TTATAGGAGTATGGAAGTTTTGTAATAATCtttaaagatgtttttttgTA
TCTTACTCTATCCAAGGCATGTATttacaatttctgaaaaatactATGAG
GCCCttagtcaaccctcaattcacgttttcacgcacaaaattttgccaat
tcacgtattcactcgcgataaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005287-exon-sc0000052-1491911889:293947..294134 | TCONS_00005287-exon-sc0000052-1491911889:293947..294134 | Clytia hemisphaerica | exon |
| TCONS_00005287-exon-sc0000052-1510915933:293947..294134 | TCONS_00005287-exon-sc0000052-1510915933:293947..294134 | Clytia hemisphaerica | exon |
| TCONS_00005287-exon-sc0000052-1575043694:293947..294134 | TCONS_00005287-exon-sc0000052-1575043694:293947..294134 | Clytia hemisphaerica | exon |
| TCONS_00005287-exon-sc0000052-1491911889:296038..296179 | TCONS_00005287-exon-sc0000052-1491911889:296038..296179 | Clytia hemisphaerica | exon |
| TCONS_00005287-exon-sc0000052-1510915933:296038..296179 | TCONS_00005287-exon-sc0000052-1510915933:296038..296179 | Clytia hemisphaerica | exon |
| TCONS_00005287-exon-sc0000052-1575043694:296038..296179 | TCONS_00005287-exon-sc0000052-1575043694:296038..296179 | Clytia hemisphaerica | exon |
| TCONS_00005287-exon-sc0000052-1491911889:296514..296920 | TCONS_00005287-exon-sc0000052-1491911889:296514..296920 | Clytia hemisphaerica | exon |
| TCONS_00005287-exon-sc0000052-1510915933:296514..296920 | TCONS_00005287-exon-sc0000052-1510915933:296514..296920 | Clytia hemisphaerica | exon |
| TCONS_00005287-exon-sc0000052-1575043694:296514..296920 | TCONS_00005287-exon-sc0000052-1575043694:296514..296920 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000052 | supercontig | sc0000052:293947..296920 + |
Blast
The following BLAST results are available for this feature:
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