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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005284 ID=TCONS_00005284|Name=TCONS_00005284|organism=Clytia hemisphaerica|type=transcript|length=3538bpRun BLAST on NCBI transcript from alignment at sc0000052:262423..272628+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005284 ID=TCONS_00005284|Name=TCONS_00005284|organism=Clytia hemisphaerica|type=transcript|length=10206bp|location=Sequence derived from alignment at sc0000052:262423..272628+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00005284 vs. Swiss-Prot (Human)
Match: TBX4 (T-box transcription factor TBX4 OS=Homo sapiens GN=TBX4 PE=1 SV=2) HSP 1 Score: 145.976 bits (367), Expect = 7.754e-39 Identity = 74/160 (46.25%), Postives = 103/160 (64.38%), Query Frame = 2
Query: 2450 VKFTGMLTSSKYVILLDFIPADQFRYKFEYKPNAPKWMVACEEGTPKPTQVYIHPFSPQFGFEWCRTDVSFIKCKLTNNYRENCGHILMQSMHKYQPRINVLYWDGTLPFQITPHEMMRLCVKKSFMFEQTQFIAVTAYQNNEVTNLKIQSNPFARGFRG 2929
VK TGM +KY++L+D +PAD RYKF KWMVA + P ++Y+HP SP G W R VSF K KLTNN+ + GHI++ SMHKYQPR++++ D F + C + +F +T FI+VT+YQN+++T LKI++NPFA+GFRG
Sbjct: 102 VKVTGMNPKTKYILLIDIVPADDHRYKFCDN----KWMVAGKAEPAMPGRLYVHPDSPATGAHWMRQLVSFQKLKLTNNHLDPFGHIILNSMHKYQPRLHIVKADENNAFG---SKNTAFC---THVFPETSFISVTSYQNHKITQLKIENNPFAKGFRG 251 HSP 2 Score: 35.4242 bits (80), Expect = 7.754e-39 Identity = 13/33 (39.39%), Postives = 22/33 (66.67%), Query Frame = 1
Query: 2341 DKHLGNVEIELINKKLWDDFFNTGTEMILTRNG 2439
++ + N+++ L K+LW F GTEMI+T+ G
Sbjct: 61 EQTIENIKVGLHEKELWKKFHEAGTEMIITKAG 93 The following BLAST results are available for this feature:
BLAST of TCONS_00005284 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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