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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005283 ID=TCONS_00005283|Name=TCONS_00005283|organism=Clytia hemisphaerica|type=transcript|length=1726bp
TACAGAATTTCGTGTTTATTAAATTCTTACTTCTGAGctCTCGAGCAGAA
GAATCGCATCTCAAGtttgagACACACGGCCACGCGTAGAAATCGTTTGG
AGGATTTACGAAAAGGTAAAGTTACCACAGTCGAGACACGTGACCCCAAA
AAAGACGTCGCGCCCAACCAAAAGGTTAAAGCGAACAAGAACGTGTATAG
AAAGGGACGTCGTGGAGTTTCACGCAAACAGGGTACGTACAATGAAGAGA
GCTCTGAAGGCACGGTAGATACATCAATCGCATTCGTTTGCATCAATCGG
TTGGCGGAAGAATTCAATACCGAGAAAAGCATCAAAGAGTTTTACAATTT
AGATGCACAGAATCGGCTGCCGGCACAAATAGTTACCATTGACGACgatg
atgataatgatgatgGATCTCCAAAGAAAAACGATGCAACCACGACATAC
AGTGAACAAGATCTCAACTATCTGAGCTTAGTACGTGTCAAACCTAATAA
ACTTTCCAAAACTGAAAGTGAAATGTTTGATAAAAATCTCAACGAGCATT
CTGCAGAAGATGTAGAGGATGATTTGACGTCACAAGGGCGGGGTAAAGGG
CGTTCATTGAACAGTGTCATCTCTATGTTAACCGCCACGCGTAACCAACC
ACGGCCCTCCCATCTACTTGAACAATATAAACAAAGTAAaaacaagaata
aacaaacaaCACAATCCAAAGAGAACATCAATGTCATTGATCTTTCCAAC
GATGACGCGCCATCTGCTGTTAAAACCAATATTGTGGAATCGGCACCTGA
TGGCTCCATCAACATTCCAGGAAAAGGTCAATACAAGATCATGGAACAAA
TTGTCACCAAACAAGGTGATCGCAACAAAATCATCTTGCGACTCGGAAAA
CCGGTCAAAACAAACCAGCCAGTGGTGGAAAAGAGGAACAAATCGAAGAC
GACGGTCAATTCAAACGCCGTGTCACCTTCACGTGACATCACGTCACCAC
GTACCTCCGTCGATGATATGTACACGTTAGAAAACATGGTACACACGCAT
CAAGGCTTGGATGAAATGCTCCGTAACCGATTCAAGAAAGTACATACGTT
TTGCGCTAAACTTCCACGCAACCCGCTGATGTGGACAAGGAAACACGTCT
CGACCTTCATCAATAATGCTAACTTCGCCAAATATGCTTCCAACTTTTCC
GAACAGGAGATTGATGGACACGCTTTGATGTTGTTAACAGTGCAAGAAAT
CCACCACATGTTGGGCGTCAAACTTGGTCCCGCCATGAAAATCCATGACC
TCATTTATTCTCTGCAACAGCTGGTCAACGAGGCGTATTTGGCCAGTAAG
AACCGTATTCTCTCAAAATCCAATTGATTCTATTGGTTAATTGATAAAAT
CCAACTGATTTCATTGGTTATTTGTGAAAATCCAATCGAATTCACTGGAT
ACTTGTTGTTTTGGTCAtcataaagactttgttttctcctttgttaTATA
CTTTGTTTAATACTTTGTTTATATAGGACCCATGTTTttatacacccctt
tctcaaaaacctgtaggatttttttcagccaggaGGGGTAAGAATAACGG
ATTTAAACTCGATGTGGATTGATATTTATTATATTCTTTATGACCGGGGG
ATTTGAATTCCTTAGTTTTCAAGTCAGACAATTTATTGAGGTGAACTGGG
GTGGAAAAAATCagacaatattttgc Run BLAST on NCBI transcript from alignment at sc0000052:262423..267647+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005283 ID=TCONS_00005283|Name=TCONS_00005283|organism=Clytia hemisphaerica|type=transcript|length=5225bp|location=Sequence derived from alignment at sc0000052:262423..267647+ (Clytia hemisphaerica)
TACAGAATTTCGTGTTTATTAAATTCTTACTTCTGAGGTAAGATCTCTTA
AATTCTTAACGCTCTCTGCACACGTTACTAATCTTATTTTTGTTGATTAT
AATGGTTTATAGTGTAAACTCATCTTTATTATCCAGAAGGCAAggtttta
aaatatttgtaaaacaaTCCTCAAAGTGTTAAATTTCGCGCCAAAGAGAG
GGTTTTAATGAAAAGACTTATTttgtgtttctttttctttcagctCTCGA
GCAGAAGAATCGCATCTCAAGtttgaggtaatttttgttttttcgacTGA
ATGTTATTGAATTTATCTTTGAAGGAAAAGCCCAGGAAAAGTCTTGATTC
aagtttgtgtaaaaaatctcATGTTTAGTTTTCAAACATCTTTTATTTTA
TCATTATctgctaaatatttttctattcAGCTCATTGTTTAGTGAAGGGA
TCTTAacattttttaacactttttgaaGAGACGGTACAAAGTAACATAAC
ACTCTTCATAAACACACTCAGCTTTCTGTTGGCACAAGTTTAAGACGAAA
TATTTGTCGATAAGAAACCATAGACTATGATAGATTTAtagtccgaaggg
ctagagtgcTTTAAGTCATCGCAGGCaacaaaaagtgaatatcggaaaaa
atattgttgcttttgttttcgaaaatctgcgaagcttctgattggtcacg
cgctgaaattctattgcaatgtcacgtgacctaggatTTCTTACCTAACC
ACCGCACAATTTACAGCTAAggtacgccatctagcccttcgggctttata
aatctatgaagAAACCTCCTTTATTGTGGACACggcttttcttttctttt
agaaGGACCTATTATCTCATACAGTAAACTACTTTTTTCTATCACTCTGA
CACTGCaaagtcattaaaaaataacgaaagaGTTTGTCAAACCGTTTTCT
TATTGCTATCTATTGTTCTTTTCAAGTACTCACTTCACTTCCATAATTGT
TGATAGCCTCATaatattttaatgactttctattgttctctgtcTTTTGA
tgccaaaaattaattttcctcCCTTCAACAATTTAAAGTTGACAACATCA
GTAAAAAGAAGGAATTCCCATATGAATGCTAATGTTAAATCACACCTTTG
TcggaatatattttttgttttatgttaaaatttatttttctcttttaccT
ACCGGCCGAAAACCATTTATGAAAAGCATTCGAATCTTTCAGTCTTTTAC
TTGAttttaaaagactttaattTAGTTTTCTTGATATAAATTACTTTGGG
ATGCTAAAATTTGAATTAGGATCATCTTCATTActcattacacgtttttt
ttataagaacatccgaaagcctTCTaaatttttgggttttaagcctaaat
atattcttaacattttctattttcaccattttatgaccatttttacccat
tttcgtAAGGAATTTGGTGTTTtggagtctgcaaagccttagaatattct
tagcttgttcttagcatttttgcCATTGAagcattttgttcttatatagt
ttgttcttataaaagaaaacgtgtaggATCATTTGTTTACATAAATCTTT
GATTAATTGACTTTCTTGAgtacagtacacgttttttatataagaacaaa
ctatataagaacataaggcttcaatggccaaaatgttaagaacaacaATA
ACTACATTCTAAGACTTTATAGATTTTAAACGgcaaatttcttaagaaaa
tggtcaaaaatgctcacaaaatggtgaaaataagaacatgctaaaaacat
ttttaggcttgaaactcaaaaagttaagaacatcctgaggcttcaaaaat
tttgaatgttctttaaaaaaaatgtacatTAACTGCCTTAAATCCTTGTT
ATCATAAGAGTTATAAACCACATGTTTAAATATAAGAACAAAGACAATAA
GAATCTTTGGAACCTGAAAAGTTTAAGAAcattacacgttgtttttttat
aaaagaacatccaaaatcttttaagctttctgatgttcttaattttttgg
gttttaagcctaaaaatgttcttaacattttcttattttcaccattttgt
gaccttttttacccattttcctaagaaatcgtgTGTTTTATCGTCCGCAA
aaccttcaaatgttcttaatttgttcttatccTTTTTGTCAttgaagtct
tatgttcttatgtttataatttgttcctataaaaaaaggaataggcgtag
cgagatactctgcaaaatttatggacgAGAGCGgcttttatgacactgta
attacacgcttttttttttataagaatggtgttttttcatttcatcatgg
atattcttaactttttggcgaaaatcatccaaaaatattcttacggtatt
cttaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtt
cttaggttaagatcgaaattggcaatctacaggttaaaatgcattaaaaa
tggcattcttaggttcagttgctaaattccatgatggtggtattcttacc
atattcttaattttttggccattttcatcatggacattcttataaagtgt
attcttataaaaaaaaaagcgtgtattatctttgttttatcaaaagataa
tgaatatgtcataaacgtctgcacttcctcataaattttgcagggtatct
cgcttccCCTATGAAAGGTTACTTGGATTCTTCTCTTGAAGATATTctca
aattagtttttttttaaatcacataANTTGGAGTGAAGAACTTCTCTTGA
AGATATTCTCAAATTATTCTCAAATCACATAGATTTTGGTAATTGTACTC
tattttggtttataattttgtatttttctgtTACAGACACACGGCCACGC
GTAGAAATCGTTTGGAGGATTTACGAAAAGGTAAAGTTACCACAGTCGAG
ACACGTGACCCCAAAAAAGACGTCGCGCCCAACCAAAAGGTTAAAGCGAA
CAAGAACGTGTATAGAAAGGGACGTCGTGGAGTTTCACGCAAACAGGGTA
CGTACAATGAAGAGAGCTCTGAAGGCACGGTAGATACATCAATCGCATTC
GTTTGCATCAATCGGTTGGCGGAAGAATTCAATACCGAGAAAAGCATCAA
AGAGTTTTACAATTTAGATGCACAGAATCGGCTGCCGGCACAAATAGTTA
CCATTGACGACgatgatgataatgatgatgGATCTCCAAAGAAAAACGAT
GCAACCACGACATACAGTGAACAAGATCTCAACTATCTGAGCTTAGTACG
TGTCAAACCTAATAAACTTTCCAAAACTGAAAGTGAAATGTTTGATAAAA
ATCTCAACGAGCATTCTGCAGAAGATGTAGAGGATGATTTGACGTCACAA
GGGCGGGGTAAAGGGCGTTCATTGAACAGTGTCATCTCTATGTTAACCGC
CACGCGTAACCAACCACGGCCCTCCCATCTACTTGAACAATATAAACAAA
GTAAaaacaagaataaacaaacaaCACAATCCAAAGAGAACATCAATGTC
ATTGATCTTTCCAACGATGACGCGCCATCTGCTGTTAAAACCAATATTGT
GGAATCGGCACCTGATGGCTCCATCAACATTCCAGGAAAAGGTCAATACA
AGATCATGGAACAAATTGTCACCAAACAAGGTGATCGCAACAAAATCATC
TTGCGACTCGGAAAACCGGTCAAAACAAACCAGCCAGTGGTGGAAAAGAG
GAACAAATCGAAGACGACGGTCAATTCAAACGCCGTGTCACCTTCACGTG
ACATCACGTCACCACGTACCTCCGTCGATGATATGTACACGTTAGAAAAC
ATGGTACACACGCATCAAGGCTTGGATGAAATGCTCCGTAACCGATTCAA
GAAAGTACATACGTTTTGCGCTAAACTTCCACGCAACCCGCTGATGTGGA
CAAGGAAACACGTCTCGACCTTCATCAATAATGCTAACTTCGCCAAATAT
GCTTCCAACTTTTCCGAACAGGTTGGTGTTTTTTTCTATGTTAATGTGTC
AAAGAGAGATTAGAGAAGAGTGTCATTTCTCTGAAGACGAAGTAGACATG
ATTTGCCAGTCAGACGTGAGGACAAAAGTAGACTAGATTCGCCTTCTGGG
GGAACTTTGcatctgataatttttgatgggGCTGAGACTAGTGAAGCCCT
CTTAATCATATTATCCAGCCTATCAAAAAGCCTAAGTTGACCTCAGGCTA
TGACAAATGGGGTTTTACATTCAAACTGAATAGCACATGTACTTTTCAAT
CTCTCCGTTTTTACTCCATTCACCACCTTTTTAGTAACTCGTGATATTGA
AAGAGTTTTTGAGTATACTACTGCGTCAATAAACGTCATGGTGTCTAAGA
TTTCAGTTCTGAGCACCCCTGAGAGTGAAATCTATATAAAACTCTCTTGT
AGTAGCTATTAGTGAGTGACTACATGTCTGTAGATATCCTAAGAGTCCAT
CGAAGACGAAATTCAATCCAGAAGAAAGTTGTTAGGGTTAGCAGTTGCGT
AGTGCGAACAAGGGCTAGATGAACTTTGTCCGTACTCGTGATCAATTTAA
CCTCGATAATGACTTATATCtctaataaatattttcatttccaTGTCACC
ACCAGGAGATTGATGGACACGCTTTGATGTTGTTAACAGTGCAAGAAATC
CACCACATGTTGGGCGTCAAACTTGGTCCCGCCATGAAAATCCATGACCT
CATTTATTCTCTGCAACAGCTGGTCAACGAGGCGTATTTGGCCAGTAAGA
ACCGTATTCTCTCAAAATCCAATTGATTCTATTGGTTAATTGATAAAATC
CAACTGATTTCATTGGTTATTTGTGAAAATCCAATCGAATTCACTGGATA
CTTGTTGTTTTGGTCAtcataaagactttgttttctcctttgttaTATAC
TTTGTTTAATACTTTGTTTATATAGGACCCATGTTTttatacaccccttt
ctcaaaaacctgtaggatttttttcagccaggaGGGGTAAGAATAACGGA
TTTAAACTCGATGTGGATTGATATTTATTATATTCTTTATGACCGGGGGA
TTTGAATTCCTTAGTTTTCAAGTCAGACAATTTATTGAGGTGAACTGGGG
TGGAAAAAATCagacaatattttgc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005283-exon-sc0000052-1491911889:262423..262459 | TCONS_00005283-exon-sc0000052-1491911889:262423..262459 | Clytia hemisphaerica | exon |
| TCONS_00005283-exon-sc0000052-1510915933:262423..262459 | TCONS_00005283-exon-sc0000052-1510915933:262423..262459 | Clytia hemisphaerica | exon |
| TCONS_00005283-exon-sc0000052-1575043694:262423..262459 | TCONS_00005283-exon-sc0000052-1575043694:262423..262459 | Clytia hemisphaerica | exon |
| TCONS_00005283-exon-sc0000052-1491911889:262666..262699 | TCONS_00005283-exon-sc0000052-1491911889:262666..262699 | Clytia hemisphaerica | exon |
| TCONS_00005283-exon-sc0000052-1510915933:262666..262699 | TCONS_00005283-exon-sc0000052-1510915933:262666..262699 | Clytia hemisphaerica | exon |
| TCONS_00005283-exon-sc0000052-1575043694:262666..262699 | TCONS_00005283-exon-sc0000052-1575043694:262666..262699 | Clytia hemisphaerica | exon |
| TCONS_00005283-exon-sc0000052-1491911889:265359..266493 | TCONS_00005283-exon-sc0000052-1491911889:265359..266493 | Clytia hemisphaerica | exon |
| TCONS_00005283-exon-sc0000052-1510915933:265359..266493 | TCONS_00005283-exon-sc0000052-1510915933:265359..266493 | Clytia hemisphaerica | exon |
| TCONS_00005283-exon-sc0000052-1575043694:265359..266493 | TCONS_00005283-exon-sc0000052-1575043694:265359..266493 | Clytia hemisphaerica | exon |
| TCONS_00005283-exon-sc0000052-1491911889:267128..267647 | TCONS_00005283-exon-sc0000052-1491911889:267128..267647 | Clytia hemisphaerica | exon |
| TCONS_00005283-exon-sc0000052-1510915933:267128..267647 | TCONS_00005283-exon-sc0000052-1510915933:267128..267647 | Clytia hemisphaerica | exon |
| TCONS_00005283-exon-sc0000052-1575043694:267128..267647 | TCONS_00005283-exon-sc0000052-1575043694:267128..267647 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000052 | supercontig | sc0000052:262423..267647 + |
Blast
The following BLAST results are available for this feature:
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