TCONS_00005282 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005282
Unique NameTCONS_00005282
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3642

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005282 ID=TCONS_00005282|Name=TCONS_00005282|organism=Clytia hemisphaerica|type=transcript|length=3642bp
aaagttttgaagcttttttgtatagtttaaaaaatcgagtgattaaaaat
tgtttttctttgaacAAGTGAGAAAAAAGGTCTCATTTGCTACAGAATTT
CGTGTTTATTAAATTCTTACTTCTGAGctCTCGAGCAGAAGAATCGCATC
TCAAGtttgagACACACGGCCACGCGTAGAAATCGTTTGGAGGATTTACG
AAAAGGTAAAGTTACCACAGTCGAGACACGTGACCCCAAAAAAGACGTCG
CGCCCAACCAAAAGGTTAAAGCGAACAAGAACGTGTATAGAAAGGGACGT
CGTGGAGTTTCACGCAAACAGGGTACGTACAATGAAGAGAGCTCTGAAGG
CACGGTAGATACATCAATCGCATTCGTTTGCATCAATCGGTTGGCGGAAG
AATTCAATACCGAGAAAAGCATCAAAGAGTTTTACAATTTAGATGCACAG
AATCGGCTGCCGGCACAAATAGTTACCATTGACGACgatgatgataatga
tgatgGATCTCCAAAGAAAAACGATGCAACCACGACATACAGTGAACAAG
ATCTCAACTATCTGAGCTTAGTACGTGTCAAACCTAATAAACTTTCCAAA
ACTGAAAGTGAAATGTTTGATAAAAATCTCAACGAGCATTCTGCAGAAGA
TGTAGAGGATGATTTGACGTCACAAGGGCGGGGTAAAGGGCGTTCATTGA
ACAGTGTCATCTCTATGTTAACCGCCACGCGTAACCAACCACGGCCCTCC
CATCTACTTGAACAATATAAACAAAGTAAaaacaagaataaacaaacaaC
ACAATCCAAAGAGAACATCAATGTCATTGATCTTTCCAACGATGACGCGC
CATCTGCTGTTAAAACCAATATTGTGGAATCGGCACCTGATGGCTCCATC
AACATTCCAGGAAAAGGTCAATACAAGATCATGGAACAAATTGTCACCAA
ACAAGGTGATCGCAACAAAATCATCTTGCGACTCGGAAAACCGGTCAAAA
CAAACCAGCCAGTGGTGGAAAAGAGGAACAAATCGAAGACGACGGTCAAT
TCAAACGCCGTGTCACCTTCACGTGACATCACGTCACCACGTACCTCCGT
CGATGATATGTACACGTTAGAAAACATGGTACACACGCATCAAGGCTTGG
ATGAAATGCTCCGTAACCGATTCAAGAAAGTACATACGTTTTGCGCTAAA
CTTCCACGCAACCCGCTGATGTGGACAAGGAAACACGTCTCGACCTTCAT
CAATAATGCTAACTTCGCCAAATATGCTTCCAACTTTTCCGAACAGGAGA
TTGATGGACACGCTTTGATGTTGTTAACAGTGCAAGAAATCCACCACATG
TTGGGCGTCAAACTTGGTCCCGCCATGAAAATCCATGACCTCATTTATTC
TCTGCAACAGCTGGTCAACGAGGCGTATTTGGCCAATGAAGGAGGAGGGT
TTGATGACGAGGAAAGGTTCACTTTGCCAAAGACCGAACACAAAAGTACC
AAACATAAGAATcgcgatttcactttcacttCTGATAACTATCAACCCAC
TGAGACAGATTcaatagaaaatgaaaaagattcaCTCCATGAAATTAGTC
ACAGTGACGCAACAACGACAGAAGAAAACGAAAGTCTTTTCGAATCTCGT
CCAAGTGAAAATGGAAATGATGAGGTCATCGAAAATGTATCTTCAATACA
ACCCAATGATGTCGaaatatcaaagaaaatcgaTGAGCAAATCGAAAAAA
TGGAAGTGAAAAGCACAAACAGTGTAAAGGACGAACATGAAAATGAGGTT
GAAAAATCACCTTTGAAACAGGAAACAAAGATTTCCAATACAGACATAAT
AGACAATACCCCCGGAGAATCGAAACAATCGAACGCGAAAGTCTCCTCAT
GGATGGATCAAAACAATGACGCATTAGAGAAAGTTCGGATGGAAACATGT
ggagattttgaaaaagaatattATGGACTCGTTAATCAAACATACGGCTC
TAATACCAATCCGTACTTAGTACGTGGTCCACCCATTCAGACGCCCGGTC
ATAAACATCCAGTACGTTTCATTCAAATACGCCCATTGGCGGGTAGTAAT
CCAAATATGATCTATCCGCCCATGGCAGGGGCCTATCCAAGGTTTATACA
ACCACCGCCAACGTCAGCTGAAAGCCCTCAGCAAATGccatttattttaa
aatttggttCTGTCAAAGACTTAGAAGGTGGAACACACCCTTCAGCTACC
AGTGAGAAAATTGATActaaatccaaaaaaacaaaaaattctaaGAGCGA
AGATCGAAAAGGTAGCGAACGGCGAAAgcgaaaaagtgacgtcacagcAG
CGCCTCGCTCACCCAAACATATTCGACCTGGTGCGTTGGCAATCATACCA
AAATATCCAGACAATTCGAAAGAGATTTACGATAAACATTTAGGGAATGT
TGAAATTGAATTGATCAACAAAAAGTTATGGGACGATTTCTTTAATACTG
GGACTGAAATGATCTTAACCAGAAACGGAAGACGTATGTTTCCAGCATTA
GGTGTCAAATTCACAggaatgctgacgtcatcaaaatacgTCATCTTACT
GGATTTCATCCCGGCTGATCAATTCCGATACAAGTTCGAATACAAACCGA
ACGCCCCGAAGTGGATGGTGGCATGCGAGGAAGGAACGCCCAAACCAACG
CAAGTTTACATCCATCCCTTCTCACCCCAGTTCGGCTTCGAATGGTGTCG
GACAGACGTCAGCTTCATCAAGTGCAAATTGACCAACAATTACCGTGAAA
ATTGCGGACATattttGATGCAGTCGATGCACAAATACCAACCACGTATC
AACGTTTTGTATTGGGATGGTACTTTACCTTTTCAAATTACACCTCATGA
AATGATGCGACTGTGTGTGAAAAAGTCTTTTATGTTCGAACAAACACAAT
TCATCGCTGTCACCGCTTACCAAAACAATGAGGTAACGAACCTCAAGATT
CAGAGCAATCCTTTCGCTAGAGGCTTTCGTGGTGATTGGCGCAAAACGAA
AGCCAAACGAACCAATCAGAAGAAAGATACTTCAACGGGCTTCAgttatg
aagatgaaaatgaagaggaAGATTATGGTGGTTCGGACGACGAACAATCG
CAAAGCATGGTGGGTGAACAATCGCAAAGCATGACGAATAGCATGAGTTT
TGATGACAAGGAGAATGATAACGATGACGCAATGCATTTCAATGACACAA
CCATCGTTAAAGTCGAGCCGGAATATTAACACTCGTTTTTTTGTTTGCTC
AAAAACACTTACATACATACATAGAAATAAATCTTACTTTGGCCCTGCGC
AAGTTTCTTTCGCAAAGTCTTTCTAAGAAATTGGAAAGGTCCAGCTTTGA
ACTGTTAAAcatattgtttttataagaacatccaaaatttatgaagcctt
tggatgttcataacgttttgagttttaagcctaataaTGTATTTAACAAA
ACATGTGCTTATTTTcgctattttccttatgttcttatgtatagtttgtt
cttataaaaaacgtgtttctCCCTAACCGGCTTCACCCTCGGTCTTGAAA
GGGTTACTATTTCTTTTAGCCTTTCAGGAAACTATGTTATAC
Run BLAST on NCBI

transcript from alignment at sc0000052:262333..272628+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005282 ID=TCONS_00005282|Name=TCONS_00005282|organism=Clytia hemisphaerica|type=transcript|length=10296bp|location=Sequence derived from alignment at sc0000052:262333..272628+ (Clytia hemisphaerica)
aaagttttgaagcttttttgtatagtttaaaaaatcgagtgattaaaaat
tgtttttctttgaacAAGTGAGAAAAAAGGTCTCATTTGCTACAGAATTT
CGTGTTTATTAAATTCTTACTTCTGAGGTAAGATCTCTTAAATTCTTAAC
GCTCTCTGCACACGTTACTAATCTTATTTTTGTTGATTATAATGGTTTAT
AGTGTAAACTCATCTTTATTATCCAGAAGGCAAggttttaaaatatttgt
aaaacaaTCCTCAAAGTGTTAAATTTCGCGCCAAAGAGAGGGTTTTAATG
AAAAGACTTATTttgtgtttctttttctttcagctCTCGAGCAGAAGAAT
CGCATCTCAAGtttgaggtaatttttgttttttcgacTGAATGTTATTGA
ATTTATCTTTGAAGGAAAAGCCCAGGAAAAGTCTTGATTCaagtttgtgt
aaaaaatctcATGTTTAGTTTTCAAACATCTTTTATTTTATCATTATctg
ctaaatatttttctattcAGCTCATTGTTTAGTGAAGGGATCTTAacatt
ttttaacactttttgaaGAGACGGTACAAAGTAACATAACACTCTTCATA
AACACACTCAGCTTTCTGTTGGCACAAGTTTAAGACGAAATATTTGTCGA
TAAGAAACCATAGACTATGATAGATTTAtagtccgaagggctagagtgcT
TTAAGTCATCGCAGGCaacaaaaagtgaatatcggaaaaaatattgttgc
ttttgttttcgaaaatctgcgaagcttctgattggtcacgcgctgaaatt
ctattgcaatgtcacgtgacctaggatTTCTTACCTAACCACCGCACAAT
TTACAGCTAAggtacgccatctagcccttcgggctttataaatctatgaa
gAAACCTCCTTTATTGTGGACACggcttttcttttcttttagaaGGACCT
ATTATCTCATACAGTAAACTACTTTTTTCTATCACTCTGACACTGCaaag
tcattaaaaaataacgaaagaGTTTGTCAAACCGTTTTCTTATTGCTATC
TATTGTTCTTTTCAAGTACTCACTTCACTTCCATAATTGTTGATAGCCTC
ATaatattttaatgactttctattgttctctgtcTTTTGAtgccaaaaat
taattttcctcCCTTCAACAATTTAAAGTTGACAACATCAGTAAAAAGAA
GGAATTCCCATATGAATGCTAATGTTAAATCACACCTTTGTcggaatata
ttttttgttttatgttaaaatttatttttctcttttaccTACCGGCCGAA
AACCATTTATGAAAAGCATTCGAATCTTTCAGTCTTTTACTTGAttttaa
aagactttaattTAGTTTTCTTGATATAAATTACTTTGGGATGCTAAAAT
TTGAATTAGGATCATCTTCATTActcattacacgttttttttataagaac
atccgaaagcctTCTaaatttttgggttttaagcctaaatatattcttaa
cattttctattttcaccattttatgaccatttttacccattttcgtAAGG
AATTTGGTGTTTtggagtctgcaaagccttagaatattcttagcttgttc
ttagcatttttgcCATTGAagcattttgttcttatatagtttgttcttat
aaaagaaaacgtgtaggATCATTTGTTTACATAAATCTTTGATTAATTGA
CTTTCTTGAgtacagtacacgttttttatataagaacaaactatataaga
acataaggcttcaatggccaaaatgttaagaacaacaATAACTACATTCT
AAGACTTTATAGATTTTAAACGgcaaatttcttaagaaaatggtcaaaaa
tgctcacaaaatggtgaaaataagaacatgctaaaaacatttttaggctt
gaaactcaaaaagttaagaacatcctgaggcttcaaaaattttgaatgtt
ctttaaaaaaaatgtacatTAACTGCCTTAAATCCTTGTTATCATAAGAG
TTATAAACCACATGTTTAAATATAAGAACAAAGACAATAAGAATCTTTGG
AACCTGAAAAGTTTAAGAAcattacacgttgtttttttataaaagaacat
ccaaaatcttttaagctttctgatgttcttaattttttgggttttaagcc
taaaaatgttcttaacattttcttattttcaccattttgtgacctttttt
acccattttcctaagaaatcgtgTGTTTTATCGTCCGCAAaaccttcaaa
tgttcttaatttgttcttatccTTTTTGTCAttgaagtcttatgttctta
tgtttataatttgttcctataaaaaaaggaataggcgtagcgagatactc
tgcaaaatttatggacgAGAGCGgcttttatgacactgtaattacacgct
tttttttttataagaatggtgttttttcatttcatcatggatattcttaa
ctttttggcgaaaatcatccaaaaatattcttacggtattcttaNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttcttaggttaa
gatcgaaattggcaatctacaggttaaaatgcattaaaaatggcattctt
aggttcagttgctaaattccatgatggtggtattcttaccatattcttaa
ttttttggccattttcatcatggacattcttataaagtgtattcttataa
aaaaaaaagcgtgtattatctttgttttatcaaaagataatgaatatgtc
ataaacgtctgcacttcctcataaattttgcagggtatctcgcttccCCT
ATGAAAGGTTACTTGGATTCTTCTCTTGAAGATATTctcaaattagtttt
tttttaaatcacataANTTGGAGTGAAGAACTTCTCTTGAAGATATTCTC
AAATTATTCTCAAATCACATAGATTTTGGTAATTGTACTCtattttggtt
tataattttgtatttttctgtTACAGACACACGGCCACGCGTAGAAATCG
TTTGGAGGATTTACGAAAAGGTAAAGTTACCACAGTCGAGACACGTGACC
CCAAAAAAGACGTCGCGCCCAACCAAAAGGTTAAAGCGAACAAGAACGTG
TATAGAAAGGGACGTCGTGGAGTTTCACGCAAACAGGGTACGTACAATGA
AGAGAGCTCTGAAGGCACGGTAGATACATCAATCGCATTCGTTTGCATCA
ATCGGTTGGCGGAAGAATTCAATACCGAGAAAAGCATCAAAGAGTTTTAC
AATTTAGATGCACAGAATCGGCTGCCGGCACAAATAGTTACCATTGACGA
CgatgatgataatgatgatgGATCTCCAAAGAAAAACGATGCAACCACGA
CATACAGTGAACAAGATCTCAACTATCTGAGCTTAGTACGTGTCAAACCT
AATAAACTTTCCAAAACTGAAAGTGAAATGTTTGATAAAAATCTCAACGA
GCATTCTGCAGAAGATGTAGAGGATGATTTGACGTCACAAGGGCGGGGTA
AAGGGCGTTCATTGAACAGTGTCATCTCTATGTTAACCGCCACGCGTAAC
CAACCACGGCCCTCCCATCTACTTGAACAATATAAACAAAGTAAaaacaa
gaataaacaaacaaCACAATCCAAAGAGAACATCAATGTCATTGATCTTT
CCAACGATGACGCGCCATCTGCTGTTAAAACCAATATTGTGGAATCGGCA
CCTGATGGCTCCATCAACATTCCAGGAAAAGGTCAATACAAGATCATGGA
ACAAATTGTCACCAAACAAGGTGATCGCAACAAAATCATCTTGCGACTCG
GAAAACCGGTCAAAACAAACCAGCCAGTGGTGGAAAAGAGGAACAAATCG
AAGACGACGGTCAATTCAAACGCCGTGTCACCTTCACGTGACATCACGTC
ACCACGTACCTCCGTCGATGATATGTACACGTTAGAAAACATGGTACACA
CGCATCAAGGCTTGGATGAAATGCTCCGTAACCGATTCAAGAAAGTACAT
ACGTTTTGCGCTAAACTTCCACGCAACCCGCTGATGTGGACAAGGAAACA
CGTCTCGACCTTCATCAATAATGCTAACTTCGCCAAATATGCTTCCAACT
TTTCCGAACAGGTTGGTGTTTTTTTCTATGTTAATGTGTCAAAGAGAGAT
TAGAGAAGAGTGTCATTTCTCTGAAGACGAAGTAGACATGATTTGCCAGT
CAGACGTGAGGACAAAAGTAGACTAGATTCGCCTTCTGGGGGAACTTTGc
atctgataatttttgatgggGCTGAGACTAGTGAAGCCCTCTTAATCATA
TTATCCAGCCTATCAAAAAGCCTAAGTTGACCTCAGGCTATGACAAATGG
GGTTTTACATTCAAACTGAATAGCACATGTACTTTTCAATCTCTCCGTTT
TTACTCCATTCACCACCTTTTTAGTAACTCGTGATATTGAAAGAGTTTTT
GAGTATACTACTGCGTCAATAAACGTCATGGTGTCTAAGATTTCAGTTCT
GAGCACCCCTGAGAGTGAAATCTATATAAAACTCTCTTGTAGTAGCTATT
AGTGAGTGACTACATGTCTGTAGATATCCTAAGAGTCCATCGAAGACGAA
ATTCAATCCAGAAGAAAGTTGTTAGGGTTAGCAGTTGCGTAGTGCGAACA
AGGGCTAGATGAACTTTGTCCGTACTCGTGATCAATTTAACCTCGATAAT
GACTTATATCtctaataaatattttcatttccaTGTCACCACCAGGAGAT
TGATGGACACGCTTTGATGTTGTTAACAGTGCAAGAAATCCACCACATGT
TGGGCGTCAAACTTGGTCCCGCCATGAAAATCCATGACCTCATTTATTCT
CTGCAACAGCTGGTCAACGAGGCGTATTTGGCCAGTAAGAACCGTATTCT
CTCAAAATCCAATTGATTCTATTGGTTAATTGATAAAATCCAACTGATTT
CATTGGTTATTTGTGAAAATCCAATCGAATTCACTGGATACTTGTTGTTT
TGGTCAtcataaagactttgttttctcctttgttaTATACTTTGTTTAAT
ACTTTGTTTATATAGGACCCATGTTTttatacacccctttctcaaaaacc
tgtaggatttttttcagccaggaGGGGTAAGAATAACGGATTTAAACTCG
ATGTGGATTGATATTTATTATATTCTTTATGACCGGGGGATTTGAATTCC
TTAGTTTTCAAGTCAGACAATTTATTGAGGTGAACTGGGGTGGAAAAAAT
Cagacaatattttgcagtgacgatttgtttatttgaattttttttcagcg
gATAAAAGATTGGAGTATTGGAAGTCAATTCTTCCAGTTGGAagggggtc
ccagcgggtctatgAGAAAGGGGGGGGGTGTTTCTATCTATTATATTTTA
AGTCATAGGTTTTGTCTTGTCTTAAAAGATCATAGTTCTCTCCGGGATGA
AGACTATTCGTTgaattctttattttcttaaccAAATCTAATCAAGCTTT
GaagattttcaaatcaaaattttgagaagaATAAAAAGACGGCTCAAAAT
ATTTATTGAGTTTTGGTTTTTTGGCAAAGTGAAACCTTTCCATTTTTTCG
TCATCGTTAAAAATAAGatctttattattttcaatgtttttttatgtgtt
ttttAGATGAAGGAGGAGGGTTTGATGACGAGGAAAGGTTCACTTTGCCA
AAGACCGAACACAAAAGTACCAAACATAAGAATcgcgatttcactttcac
ttCTGATAACTATCAACCCACTGAGACAGGTACAAATCTTCTGTATTGAC
TTTTTTTACCACTATGTTATTCTGacttgtaaagtttttttattgacttg
attAAAGATTATTGACTgaaaatagaatcttttgtgtctttaaaggtttt
attttcacacaagtgttcccgtttcatatcagacacatttcatattagga
cagtgtctgcctatttttatattgtgctgatataagcaaaaatgtttttc
ttttccactttctgaccaatcttgctccacatccgtgtcaatccaatgtg
aaaaagcttgtaaattaaaattgatgaataagcaaacgatatcactctta
tttaaagacaaaacctttaagttttaatttttcgagCAAGTAATGCTACA
TTTTACATTCTAAGTCATTTTATACATTAATACTGGTATCCGGACAACCC
CCCTGGTTCAGAAAATTCTCCTCCGGAAACCTCTTTCGTGAATTCATACT
TATAATTTTGCTTCGAAATCTGTTTACAGAGATTTCTTTACTGTATGAAT
ACACCTCTCTTTCTTTAGATTcaatagaaaatgaaaaagattcaCTCCAT
GAAATTAGTCACAGTGACGCAACAACGACAGAAGAAAACGAAAGTCTTTT
CGAATCTCGTCCAAGTGAAAATGGAAATGATGAGGTCATCGAAAATGTAT
CTTCAATACAACCCAATGATGTCGaaatatcaaagaaaatcgaTGAGCAA
ATCGAAAAAATGGAAGTGAAAAGCACAAACAGTGTAAAGGACGAACATGA
AAATGAGGTTGAAAAATCACCTTTGAAACAGGAAACAAAGATTTCCAATA
CAGACATAATAGACAATACCCCCGGAGAATCGAAACAATCGAACGCGAAA
GTCTCCTCATGGATGGATCAAAACAATGACGCATTAGAGAAAGTTCGGAT
GGAAACATGTGGAGNGATGTCGaaatatcaaagaaaatcgaTGAGCAAAT
CGAAAAAATGGAAGTGAAAAGCACAGGCAGTGTAAAGGACGAACATGAAA
ATGAGGTTGAAAAATCACCTTTGAAACaggaaacaaagatttcaaATACG
GATATATTAGACAATACTTCTGGAGATcaagaatcaaaacaatcaaacgC
GAAAGTCTCCTCATGGATGGATCAAAATAATGACGCTCTAGAGAAAGTTC
GGATGGAAACATGTggagattttgaaaaagaatattATGGACTCGTTAAT
CAAACATACGGCTCTAATACCAATCCGTACTTAGTACGTGGTCCACCCAT
TCAGACGCCCGGTCATAAACATCCAGTACGTTTCATTCAAATACGCCCAT
TGGCGGGTAGTAATCCAAATATGATCTATCCGCCCATGGCAGGGGCCTAT
CCAAGGTTTATACAACCACCGCCAACGTCAGCTGAAAGCCCTCAGCAAAT
GccatttattttaaaatttggttCTGTCAAAGACTTAGAAGGTGGAACAC
ACCCTTCAGCTACCAGTGAGAAAATTGATActaaatccaaaaaaacaaaa
aattctaaGAGCGAAGATCGAAAAGGTAGCGAACGGCGAAAgcgaaaaag
tgacgtcacagcAGCGCCTCGCTCACCCAAACATATTCGACCTGGTGCGT
TGGCAATCATACCAAAATATCCAGACAATTCGAAAGAGATTTACGATAAA
CATTTAGGGAATGTTGAAATTGAATTGATCAACAAAAAGTTATGGGACGA
TTTCTTTAATACTGGGACTGAAATGATCTTAACCAGAAACGGAAGGTATG
AATGATTGACTTTTTGTGATCCTGCCAACTGACCATCTTTCAAAACACGt
ccgtttcttttataagaacatccaacccTTTACCATTtgacttttaagcc
taaaaatgttcttgaaatgttcttgaTTTTACCGTTtagtgcaatttcct
aagaatcGGGTGTTTGTCTGTAAagttttgaaatgttcttagcctgttct
taatattttagtcatcgaagccttatgctcttttTAATTTATTCTTACAA
GAAAAGCAGAATTAAAGATCTGAGTGACAGAGATTCGAATTTGAGAAGGA
ATTAAGATCTGATAAGCTGAGATACAGGGGTGAAACACTCAATAGCagta
ttgaaaatttaaaatctgaaagaaaaatgCAAGAATGTGAATTTTAAGTT
GTTGAAAGACTTCGCTATACCATTTAacagttacacgttttttataagaa
caaatcatataaaaacacaaggcttcgatggccaaaataataagaaaaag
ttaagagctTTACGGACTAAGAAAGtgcacaaaatggtgaaaataagaat
atttttaggcttaacacACAATAAGTTAAAAAACATCTAAAGGCTActta
aattttggatgttcttttattATAAACATCATGCGAACGCTgctaaagaa
aatcaatataaatTAAACAAGATCAATCAAATAAATATTAATTGCAATGG
CCACTCACTCAATCACTACACAAGGTGTATTTTGTCGTCACGGTCAATCA
GTAGACTCTCCAAAACTCGAAACTTTTTGGGGAAGAGAAAGGTTTTGTTA
CAGTTTGTTCAAGAAACGTTTGAGTCTTCCAGACTTCATTGTATCGTTAA
ACGTGTATCTTTCCTTTTTATTACTTCAGACGTATGTTTCCAGCATTAGG
TGTCAAATTCACAggaatgctgacgtcatcaaaatacgTCATCTTACTGG
ATTTCATCCCGGCTGATCAATTCCGATACAAGTTCGAATACAAACCGAAC
GCCCCGAAGTGGATGGTGGCATGCGAGGAAGGAACGCCCAAACCAACGCA
AGTTTACATCCATCCCTTCTCACCCCAGTTCGGCTTCGAATGGTGTCGGA
CAGACGTCAGCTTCATCAAGTGCAAATTGACCAACAATTACCGTGAAAAT
TGCGGACATGTAAGATCAACCTTTTCATTTCTTAGGTTATAACTTTTGCA
TGCACTCAATTTGCCATGTATATTTGATTTAACGGATAGTAAACTTTGTG
AAAATGTTGTGGACATTTTTCTAAATGATCTGCTTTCAAAATAACTGTTA
AATGGTATAGCGAAGTCTATCAATTACTTAAAATTcacatttcatttttc
tttcagattttGATGCAGTCGATGCACAAATACCAACCACGTATCAACGT
TTTGTATTGGGATGGTACTTTACCTTTTCAAATTACACCTCATGAAATGA
TGCGACTGTGTGTGAAAAAGTCTTTTATGTTCGAACAAACACAATTCATC
GCTGTCACCGCTTACCAAAACAATGAGGTACACAACATTCATATCTTGTT
TACTTCCTCATCTGGAGTCAGCTTGCTCATCCTATTTTAACATTTTGCCA
TTACTTTGAATTTCAttgatcagcatttactagttgtttgaacaattttc
aattgtttcatgagaccttttcataaattacgttagaAGAAACGCTCACC
TCGTTTTCGAAATATTGCTATGGTTAATTGATTTTCAGAGGAGTTCATGA
TAAGTTTACTCTATTTGAAAATTAACAAATGAAGACTCGAGGGATATAAT
CACCTGGATTCAAAACGAGGAAGTCGTTCTACTCACAATAATTTGTGAGC
AGGGACAATGAAATCTTTTGTCCGTCTTTTTCAGTCCAGTTTCATTCTAT
ATTCAACTATTTCTTCAGGTAACGAACCTCAAGATTCAGAGCAATCCTTT
CGCTAGAGGCTTTCGTGGTGATTGGCGCAAAACGAAAGCCAAACGAACCA
ATCAGAAGAAAGATACTTCAACGGGCTTCAgttatgaagatgaaaatgaa
gaggaAGATTATGGTGGTTCGGACGACGAACAATCGCAAAGCATGGTGGG
TGAACAATCGCAAAGCATGACGAATAGCATGAGTTTTGATGACAAGGAGA
ATGATAACGATGACGCAATGCATTTCAATGACACAACCATCGTTAAAGTC
GAGCCGGAATATTAACACTCGTTTTTTTGTTTGCTCAAAAACACTTACAT
ACATACATAGAAATAAATCTTACTTTGGCCCTGCGCAAGTTTCTTTCGCA
AAGTCTTTCTAAGAAATTGGAAAGGTCCAGCTTTGAACTGTTAAAcatat
tgtttttataagaacatccaaaatttatgaagcctttggatgttcataac
gttttgagttttaagcctaataaTGTATTTAACAAAACATGTGCTTATTT
Tcgctattttgtgagtattttcgctattttgtgagtattttcgccaattt
tcttaagaaatcgggtgtttagAGTCTGCAACgctttaaaaatgttctca
acttgatCTTAgtttttggccatcaaagccttatgttcttatgtatagtt
tgttcttataaaaaacgtgtttctCCCTAACCGGCTTCACCCTCGGTCTT
GAAAGGGTTACTATTTCTTTTAGCCTTTCAGGAAACTATGTTATAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003011XLOC_003011Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005282-exon-sc0000052-1491911889:262333..262459TCONS_00005282-exon-sc0000052-1491911889:262333..262459Clytia hemisphaericaexon
TCONS_00005282-exon-sc0000052-1510915933:262333..262459TCONS_00005282-exon-sc0000052-1510915933:262333..262459Clytia hemisphaericaexon
TCONS_00005282-exon-sc0000052-1575043694:262333..262459TCONS_00005282-exon-sc0000052-1575043694:262333..262459Clytia hemisphaericaexon
TCONS_00005282-exon-sc0000052-1491911889:262666..262699TCONS_00005282-exon-sc0000052-1491911889:262666..262699Clytia hemisphaericaexon
TCONS_00005282-exon-sc0000052-1510915933:262666..262699TCONS_00005282-exon-sc0000052-1510915933:262666..262699Clytia hemisphaericaexon
TCONS_00005282-exon-sc0000052-1575043694:262666..262699TCONS_00005282-exon-sc0000052-1575043694:262666..262699Clytia hemisphaericaexon
TCONS_00005282-exon-sc0000052-1491911889:265359..266493TCONS_00005282-exon-sc0000052-1491911889:265359..266493Clytia hemisphaericaexon
TCONS_00005282-exon-sc0000052-1510915933:265359..266493TCONS_00005282-exon-sc0000052-1510915933:265359..266493Clytia hemisphaericaexon
TCONS_00005282-exon-sc0000052-1575043694:265359..266493TCONS_00005282-exon-sc0000052-1575043694:265359..266493Clytia hemisphaericaexon
TCONS_00005282-exon-sc0000052-1491911889:267128..267266TCONS_00005282-exon-sc0000052-1491911889:267128..267266Clytia hemisphaericaexon
TCONS_00005282-exon-sc0000052-1510915933:267128..267266TCONS_00005282-exon-sc0000052-1510915933:267128..267266Clytia hemisphaericaexon
TCONS_00005282-exon-sc0000052-1575043694:267128..267266TCONS_00005282-exon-sc0000052-1575043694:267128..267266Clytia hemisphaericaexon
TCONS_00005282-exon-sc0000052-1491911889:268039..268161TCONS_00005282-exon-sc0000052-1491911889:268039..268161Clytia hemisphaericaexon
TCONS_00005282-exon-sc0000052-1510915933:268039..268161TCONS_00005282-exon-sc0000052-1510915933:268039..268161Clytia hemisphaericaexon
TCONS_00005282-exon-sc0000052-1575043694:268039..268161TCONS_00005282-exon-sc0000052-1575043694:268039..268161Clytia hemisphaericaexon
TCONS_00005282-exon-sc0000052-1491911889:268701..269088TCONS_00005282-exon-sc0000052-1491911889:268701..269088Clytia hemisphaericaexon
TCONS_00005282-exon-sc0000052-1510915933:268701..269088TCONS_00005282-exon-sc0000052-1510915933:268701..269088Clytia hemisphaericaexon
TCONS_00005282-exon-sc0000052-1575043694:268701..269088TCONS_00005282-exon-sc0000052-1575043694:268701..269088Clytia hemisphaericaexon
TCONS_00005282-exon-sc0000052-1491911889:269343..269927TCONS_00005282-exon-sc0000052-1491911889:269343..269927Clytia hemisphaericaexon
TCONS_00005282-exon-sc0000052-1510915933:269343..269927TCONS_00005282-exon-sc0000052-1510915933:269343..269927Clytia hemisphaericaexon
TCONS_00005282-exon-sc0000052-1575043694:269343..269927TCONS_00005282-exon-sc0000052-1575043694:269343..269927Clytia hemisphaericaexon
TCONS_00005282-exon-sc0000052-1491911889:270812..271091TCONS_00005282-exon-sc0000052-1491911889:270812..271091Clytia hemisphaericaexon
TCONS_00005282-exon-sc0000052-1510915933:270812..271091TCONS_00005282-exon-sc0000052-1510915933:270812..271091Clytia hemisphaericaexon
TCONS_00005282-exon-sc0000052-1575043694:270812..271091TCONS_00005282-exon-sc0000052-1575043694:270812..271091Clytia hemisphaericaexon
TCONS_00005282-exon-sc0000052-1491911889:271289..271459TCONS_00005282-exon-sc0000052-1491911889:271289..271459Clytia hemisphaericaexon
TCONS_00005282-exon-sc0000052-1510915933:271289..271459TCONS_00005282-exon-sc0000052-1510915933:271289..271459Clytia hemisphaericaexon
TCONS_00005282-exon-sc0000052-1575043694:271289..271459TCONS_00005282-exon-sc0000052-1575043694:271289..271459Clytia hemisphaericaexon
TCONS_00005282-exon-sc0000052-1491911889:271851..272392TCONS_00005282-exon-sc0000052-1491911889:271851..272392Clytia hemisphaericaexon
TCONS_00005282-exon-sc0000052-1510915933:271851..272392TCONS_00005282-exon-sc0000052-1510915933:271851..272392Clytia hemisphaericaexon
TCONS_00005282-exon-sc0000052-1575043694:271851..272392TCONS_00005282-exon-sc0000052-1575043694:271851..272392Clytia hemisphaericaexon
TCONS_00005282-exon-sc0000052-1491911889:272511..272628TCONS_00005282-exon-sc0000052-1491911889:272511..272628Clytia hemisphaericaexon
TCONS_00005282-exon-sc0000052-1510915933:272511..272628TCONS_00005282-exon-sc0000052-1510915933:272511..272628Clytia hemisphaericaexon
TCONS_00005282-exon-sc0000052-1575043694:272511..272628TCONS_00005282-exon-sc0000052-1575043694:272511..272628Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000052supercontigsc0000052:262333..272628 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.21429	1.55825	0	0.951016	79.2216	53.9523	10.2999	14.0267	9.49531	9.13766	5.81205	6.19215	3.85007	3.95722	5.06773	4.36318	5.81554	5.19974	2.39224	3.91322	5.8078	6.21487	3.20248	3.97595	3.49957e-10	1.00392e-06	10.4312	6.19287	1.93124	3.13165
Blast
[Close]
BLAST of TCONS_00005282 vs. Swiss-Prot (Human)
Match: TBX10 (T-box transcription factor TBX10 OS=Homo sapiens GN=TBX10 PE=2 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 9.661e-50
Identity = 92/197 (46.70%), Postives = 126/197 (63.96%), Query Frame = 1 
Query: 2440 LGNVEIELINKKLWDDFFNTGTEMILTRNGRRMFPALGVKFTGMLTSSKYVILLDFIPADQFRYKFEYKPNAPKWMVACEEGTPKPTQVYIHPFSPQFGFEWCRTDVSFIKCKLTNNYRENCGHILMQSMHKYQPRINVLYWDGTLPFQITPHEMMRLCVKKSFMFEQTQFIAVTAYQNNEVTNLKIQSNPFARGFR 3030
            +  V ++L  K LW++F   GTEMI+T+ GRRMFP   VK  GM + + Y +L+DFIP D  RY++ +  +A  W+VA +     P +V+ HP SP  G +W R  VSF K KLTNN  ++ GHI++ SMH+YQPR +V++ D     +    E       KSF+F +TQF AVTAYQN+ +T LKI SNPFA+GFR
Sbjct:   62 VSRVTVQLEMKPLWEEFNQLGTEMIVTKAGRRMFPPFQVKILGMDSLADYALLMDFIPLDDKRYRYAFHSSA--WLVAGKADPATPGRVHFHPDSPAKGAQWMRQIVSFDKLKLTNNLLDDNGHIILNSMHRYQPRFHVVFVDPRKDSERYAQENF-----KSFIFTETQFTAVTAYQNHRITQLKIASNPFAKGFR 251
The following BLAST results are available for this feature:
BLAST of TCONS_00005282 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBX109.661e-5046.70T-box transcription factor TBX10 OS=Homo sapiens G... [more]
back to top